+E Transcription factors KO
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Transcription Factors - Bacillus freudenreichii
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D NCTC4823_03470 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D NCTC4823_03471 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D NCTC4823_02370 adaA_1; AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D NCTC4823_00348 gltC_1; LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D NCTC4823_03776 cysL_3; LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D NCTC4823_03508 glpR; DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D NCTC4823_00469 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D NCTC4823_01816 yqzB; CBS domain-containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D NCTC4823_01297 ccpA; transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC4823_01331 rbsR; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D NCTC4823_00115 yvoA_1; GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D NCTC4823_02712 yvoA_3; GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D NCTC4823_00561 lutR_1; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC4823_00570 yvfI; transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC4823_00582 lutR_2; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC4823_00832 lutR_3; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC4823_00836 lutR_4; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC4823_03967 gabR_3; putative rhizopine catabolism regulatory protein mocR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D NCTC4823_00146 gabR_1; Crp/Fnr family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D NCTC4823_02229 gabR_2; GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D NCTC4823_02738 Uncharacterised protein K09017 rutR; TetR/AcrR family transcriptional regulator
D NCTC4823_01421 fadR_1; transcriptional regulator of fatty acids degradation (TetR/AcrR family) K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
C Lrp/AsnC family
D NCTC4823_00315 ywrC; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NCTC4823_03283 lrp; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D NCTC4823_01435 gerE; transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D NCTC4823_01196 malT_1; ATP-dependent transcriptional activator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D NCTC4823_01344 malT_2; ATP-dependent transcriptional activator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D NCTC4823_04039 ywoH; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D NCTC4823_02844 hpr; transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D NCTC4823_00873 ohrR; YkvE - MarR-type repressor/transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D NCTC4823_01616 yusO_2; MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D NCTC4823_01468 yusO_1; MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D NCTC4823_02550 ycgE; regulatory protein MerR K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D NCTC4823_01960 fur; Fe2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NCTC4823_01832 zur; zinc-specific metalloregulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D NCTC4823_02963 perR; Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D NCTC4823_03708 pobR; IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D NCTC4823_00246 kdgR_1; IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D NCTC4823_00707 kdgR_2; IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D NCTC4823_00777 rhmR_1; IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D NCTC4823_00786 rhmR_2; IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D NCTC4823_00760 vfr; putative transcriptional regulator, cyclic nucleotide binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NCTC4823_00761 crp; Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NCTC4823_00775 ntcA_2; Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NCTC4823_03878 fnr_2; Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D NCTC4823_03001 nsrR; NO-dependent activator of the ResDE regulon K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D NCTC4823_01738 cymR; transcriptional regulator of cysteine biosynthesis K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D NCTC4823_01548 arsR_1; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NCTC4823_01549 aseR; ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NCTC4823_00976 czrA; ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D NCTC4823_01948 sinR_1; transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D NCTC4823_01952 sinR_2; transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D NCTC4823_03176 sinR_3; post-exponential-phase responses transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
C PadR family
D NCTC4823_04002 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D NCTC4823_01669 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D NCTC4823_03217 PadR-like family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D NCTC4823_02090 mntR; manganese transport transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D NCTC4823_02051 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NCTC4823_00859 transcriptional activator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D NCTC4823_04167 purR; purine operon repressor PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D NCTC4823_03705 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC4823_03886 sigma54 specific Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC4823_00187 acoR_1; acetoin operon expression regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC4823_02244 acoR_2; GAF modulated sigma54 specific FIS family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC4823_02925 ArsR family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC4823_03629 putative acetoin operon transcriptional activator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC4823_00853 cdaR; sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
D NCTC4823_02218 transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D NCTC4823_03566 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D NCTC4823_02488 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D NCTC4823_01623 yozG; transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D NCTC4823_03945 Putative nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D NCTC4823_03597 ndoAI; CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
C Others
D NCTC4823_02890 csoR_1; repressor of copper utilisation proteins K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D NCTC4823_00162 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D NCTC4823_01349 transcriptional regulator CdaR K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D NCTC4823_03393 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D NCTC4823_03452 ycgP; transcriptional regulator K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D NCTC4823_04178 abrB; transcriptional regulator for transition state genes K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D NCTC4823_04157 spoVT; transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D NCTC4823_04229 noc_2; parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NCTC4823_04232 parB_2; parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NCTC4823_00024 noc_1; parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NCTC4823_00026 parB_1; parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NCTC4823_01027 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D NCTC4823_01904 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D NCTC4823_01781 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D NCTC4823_02155 tenA; TenA family transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D NCTC4823_00320 tenI; transcriptional regulator TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D NCTC4823_04128 ctsR; transcriptional repressor CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D NCTC4823_02122 phaN; repressor K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D NCTC4823_01015 cggR; DeoR family transcriptional regulator K05311 cggR; central glycolytic genes regulator
D NCTC4823_02030 mtrB; tryptophan operon RNA-binding attenuation protein (TRAP) K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D NCTC4823_00395 rsfA; RsfA family transcription factor K06314 rsfA; prespore-specific regulator
D NCTC4823_03631 splA; TRAP-like transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D NCTC4823_02228 paiB; transcriptional repressor K07734 paiB; transcriptional regulator
D NCTC4823_01382 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NCTC4823_00273 hutP; anti-terminator HutP K09683 hutP; hut operon positive regulatory protein
D NCTC4823_02818 comK; competence transcription factor ComK K02250 comK; competence protein ComK
D NCTC4823_03656 ComK family protein K02250 comK; competence protein ComK
D NCTC4823_02580 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0