+E Transcription factors KO
#
Transcription Factors - Paraburkholderia fungorum
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D OI25_625 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D OI25_890 helix-turn-helix domain protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D OI25_1409 helix-turn-helix domain protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D OI25_4417 helix-turn-helix domain protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D OI25_6922 helix-turn-helix domain protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D OI25_1415 helix-turn-helix domain protein K13652 K13652; AraC family transcriptional regulator
D OI25_6995 helix-turn-helix domain protein K13652 K13652; AraC family transcriptional regulator
D OI25_5782 helix-turn-helix domain protein K13653 K13653; AraC family transcriptional regulator
D OI25_5410 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D OI25_4107 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D OI25_4580 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D OI25_132 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D OI25_3863 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D OI25_1486 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D OI25_4508 helix-turn-helix domain protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D OI25_6581 helix-turn-helix domain protein K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D OI25_164 argR; transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D OI25_4031 helix-turn-helix domain protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D OI25_4017 helix-turn-helix domain protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D OI25_5247 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_1201 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5831 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5849 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_3596 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_1039 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5696 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_4116 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5609 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5690 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_6029 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5377 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5217 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D OI25_5219 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D OI25_4707 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D OI25_4710 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D OI25_5872 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D OI25_990 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D OI25_5268 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D OI25_221 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D OI25_5984 bacterial regulatory helix-turn-helix, lysR family protein K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D OI25_757 bacterial regulatory helix-turn-helix, lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D OI25_3325 bacterial regulatory helix-turn-helix, lysR family protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D OI25_212 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D OI25_6540 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D OI25_3714 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D OI25_4492 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D OI25_6707 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D OI25_3200 bacterial regulatory helix-turn-helix, lysR family protein K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D OI25_3051 bacterial regulatory helix-turn-helix, lysR family protein K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D OI25_4772 bacterial regulatory helix-turn-helix, lysR family protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D OI25_4037 bacterial regulatory helix-turn-helix, lysR family protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D OI25_5711 bacterial regulatory, Fis family protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D OI25_6191 bacterial regulatory helix-turn-helix, lysR family protein K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D OI25_5404 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D OI25_698 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D OI25_6598 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D OI25_5723 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D OI25_4157 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D OI25_5774 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D OI25_7342 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D OI25_3185 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D OI25_3880 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D OI25_2046 bacterial regulatory helix-turn-helix, lysR family protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D OI25_219 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D OI25_4569 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D OI25_2114 aminoethylphosphonate catabolism associated LysR transcriptional regulator family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D OI25_3689 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D OI25_4724 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D OI25_3701 bacterial regulatory helix-turn-helix, lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D OI25_4781 bacterial regulatory helix-turn-helix, lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D OI25_4467 deoR-like helix-turn-helix domain protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D OI25_2096 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D OI25_4095 winged helix DNA-binding domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D OI25_4335 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D OI25_1192 deoR-like helix-turn-helix domain protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D OI25_4804 bacterial regulatory, arsR family protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D OI25_6032 helix-turn-helix family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_3294 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_1315 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_6148 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_4495 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_5031 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_5069 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_5188 helix-turn-helix domain protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D OI25_3281 bacterial regulatory s, lacI family protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D OI25_768 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D OI25_6547 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D OI25_6537 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D OI25_196 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D OI25_4276 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D OI25_4277 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D OI25_1143 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D OI25_2243 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D OI25_92 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D OI25_4454 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D OI25_5126 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D OI25_5313 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D OI25_94 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D OI25_4409 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D OI25_2024 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_6933 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_6770 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_4249 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_5111 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_6251 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_6298 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D OI25_3581 bacterial regulatory s, gntR family protein K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D OI25_5328 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_5525 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_6431 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_5579 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_4379 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_4686 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_4739 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D OI25_6586 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D OI25_4019 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D OI25_2159 bacterial regulatory s, tetR family protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D OI25_1359 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator
D OI25_2718 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator
D OI25_6265 bacterial regulatory s, tetR family protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D OI25_6909 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D OI25_5738 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D OI25_4682 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D OI25_6780 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D OI25_5653 bacterial regulatory s, tetR family protein K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D OI25_3256 bacterial regulatory s, tetR family protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D OI25_6340 bacterial regulatory s, tetR family protein K22294 nicS; TetR/AcrR family transcriptional regulator, upper aerobic nicotinate degradation pathway regulator
D OI25_4834 bacterial regulatory s, tetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D OI25_2439 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_6146 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_1256 iclR helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_1732 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_5857 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_1521 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_2196 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_1299 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_4349 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D OI25_3930 asnC-type helix-turn-helix domain protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D OI25_38 asnC-type helix-turn-helix domain protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D OI25_6300 bacterial regulatory s, luxR family protein K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR
C MarR family
D OI25_5178 winged helix DNA-binding domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D OI25_2784 iclR helix-turn-helix domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D OI25_6796 winged helix DNA-binding domain protein K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D OI25_5254 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D OI25_7052 bacterial regulatory helix-turn-helix, lysR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D OI25_7583 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D OI25_7811 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D OI25_7555 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_8257 merR regulatory family protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_384 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_7857 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_8229 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_8244 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_7604 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_7601 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_3654 merR regulatory family protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D OI25_5795 merR HTH regulatory family protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D OI25_4907 merR regulatory family protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D OI25_2028 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D OI25_4210 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D OI25_4964 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D OI25_4377 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D OI25_4378 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D OI25_5130 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D OI25_6543 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D OI25_1713 iclR helix-turn-helix domain protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D OI25_62 winged helix DNA-binding domain protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D OI25_3743 kdgR; pectin degradation repressor protein kdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D OI25_3065 iclR helix-turn-helix domain protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D OI25_143 iclR helix-turn-helix domain protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
C CRP/FNR family
D OI25_5495 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D OI25_5227 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D OI25_7507 bacterial regulatory s, crp family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D OI25_7490 bacterial regulatory s, crp family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D OI25_6296 bacterial regulatory s, crp family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D OI25_3483 bacterial regulatory s, crp family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D OI25_2851 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D OI25_3360 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D OI25_7110 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D OI25_5746 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D OI25_2398 bacterial regulatory, arsR family protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D OI25_2714 helix-turn-helix family protein K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D OI25_104 helix-turn-helix family protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D OI25_4794 transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator
C Other families
D OI25_2039 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D OI25_1212 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D OI25_2073 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D OI25_4748 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D OI25_6962 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D OI25_4096 mqsA; antitoxin MqsA K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D OI25_5338 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D OI25_4201 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D OI25_619 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D OI25_7211 putative dNA-binding transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D OI25_3820 putative hTH-type transcriptional regulator,YgjM-like protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D OI25_7412 iclR helix-turn-helix domain protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D OI25_6872 bacterial regulatory, Fis family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D OI25_6267 bacterial regulatory, Fis family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D OI25_3476 bacterial regulatory, Fis family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D OI25_5592 AAA domain family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D OI25_5263 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein
D OI25_6954 bacterial regulatory helix-turn-helix, lysR family protein K02019 modE; molybdate transport system regulatory protein
D OI25_491 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein
D OI25_6864 HTH domain protein K21829 dauR; D-arginine utilization repressor
D OI25_6280 HTH domain protein K21829 dauR; D-arginine utilization repressor
B Ribbon-helix-helix
C CopG family
C Other families
D OI25_1556 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D OI25_7867 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D OI25_3520 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D OI25_5455 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_1419 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_7175 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_8174 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_2942 parB-like nuclease domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_1539 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_573 parB-like nuclease domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D OI25_6218 glycerol-3-phosphate responsive antiterminator family protein K02443 glpP; glycerol uptake operon antiterminator
D OI25_965 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D OI25_5059 paaX-like family protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D OI25_5063 paaX-like family protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D OI25_2741 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D OI25_844 phosphoribosyl transferase domain protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D OI25_3399 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D OI25_565 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D OI25_5331 putative FMN-binding domain protein K07734 paiB; transcriptional regulator
D OI25_4685 putative FMN-binding domain protein K07734 paiB; transcriptional regulator
D OI25_846 hypothetical protein K07735 algH; putative transcriptional regulator
D OI25_1351 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D OI25_6837 prokaryotic dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor
D OI25_933 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D OI25_1937 mraZ family protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0