+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paraburkholderia fungorum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D OI25_2209 methylated-DNA--[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D OI25_6287 methylated-DNA--[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D OI25_5256 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D OI25_5800 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E OI25_1910 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E OI25_4113 DNA-3-methyladenine glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E OI25_1114 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E OI25_526 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E OI25_6940 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D OI25_6012 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D OI25_1959 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D OI25_5694 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D OI25_2260 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D OI25_2209 methylated-DNA--[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D OI25_6287 methylated-DNA--[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D OI25_1486 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D OI25_5256 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D OI25_5800 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D OI25_5799 FAD binding domain of DNA photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E OI25_1910 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E OI25_4835 uracil DNA glycosylase superfamily protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E OI25_3118 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E OI25_4532 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E OI25_1487 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E OI25_2974 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E OI25_4113 DNA-3-methyladenine glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E OI25_1114 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E OI25_1596 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E OI25_1115 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E OI25_526 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E OI25_2826 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E OI25_1364 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E OI25_2862 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E OI25_3138 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E OI25_5245 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E OI25_296 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E OI25_1094 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E OI25_3175 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E OI25_376 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E OI25_2532 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E OI25_2920 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E OI25_2480 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E OI25_2623 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E OI25_5245 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E OI25_3138 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F OI25_1759 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F OI25_1760 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F OI25_1792 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F OI25_2339 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F OI25_3444 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E OI25_2913 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E OI25_949 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E OI25_2227 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E OI25_5240 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E OI25_508 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E OI25_1457 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E OI25_745 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E OI25_2035 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E OI25_3537 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E OI25_2348 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E OI25_2552 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E OI25_3374 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E OI25_3138 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E OI25_2920 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E OI25_2480 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E OI25_2623 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E OI25_1092 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein E OI25_626 vsr; DNA mismatch endonuclease Vsr family protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E OI25_34 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E OI25_35 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E OI25_8087 viral (Super1) RNA helicase family protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E OI25_33 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E OI25_2123 recA; protein RecA K03553 recA; recombination protein RecA E OI25_2068 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E OI25_2067 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E OI25_2070 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E OI25_1552 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E OI25_3335 putative primosomal replication protein n K02686 priB; primosomal replication protein N E OI25_7192 AAA domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E OI25_7190 calcineurin-like phosphoesterase superfamily domain protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E OI25_2123 recA; protein RecA K03553 recA; recombination protein RecA E OI25_3123 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E OI25_991 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E OI25_2862 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E OI25_2524 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E OI25_3376 recR; recombination protein RecR K06187 recR; recombination protein RecR E OI25_967 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E OI25_500 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC E OI25_2068 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E OI25_2067 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E OI25_2070 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E OI25_7192 AAA domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E OI25_7190 calcineurin-like phosphoesterase superfamily domain protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E OI25_3428 Ku protein K10979 ku; DNA end-binding protein Ku E OI25_7262 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E OI25_3429 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F OI25_2410 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F OI25_1456 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F OI25_3936 eukaryotic DNA topoisomerase I, catalytic core family protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F OI25_7521 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta F OI25_7524 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta F OI25_3463 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta F OI25_6745 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta F OI25_1508 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F OI25_2862 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F OI25_2524 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F OI25_3376 recR; recombination protein RecR K06187 recR; recombination protein RecR F OI25_3138 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F OI25_2073 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F OI25_2663 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F OI25_2419 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F OI25_1761 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F OI25_296 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F OI25_1094 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F OI25_3175 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F OI25_376 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F OI25_7249 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_1301 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_5222 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_7201 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_1602 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_559 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_5388 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F OI25_6817 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D OI25_4478 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D OI25_2123 recA; protein RecA K03553 recA; recombination protein RecA D OI25_3320 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D OI25_967 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D OI25_6702 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D OI25_7253 hypothetical protein K14160 imuA; protein ImuA D OI25_8016 hypothetical protein K14160 imuA; protein ImuA D OI25_7252 hypothetical protein K14161 imuB; protein ImuB D OI25_388 impB/mucB/samB family protein K14161 imuB; protein ImuB D OI25_8015 impB/mucB/samB family protein K14161 imuB; protein ImuB D OI25_7251 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D OI25_387 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D OI25_8014 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D OI25_1092 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D OI25_2124 recX family protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D OI25_1568 hypothetical protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D OI25_2908 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D OI25_6918 DEAD/H associated family protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D OI25_6012 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D OI25_1959 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D OI25_5694 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D OI25_2260 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D OI25_4142 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D OI25_1982 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D OI25_1983 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024