+E Transcription factors KO #

  Transcription Factors - Bordetella flabilis

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D BAU07_19040 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BAU07_12865 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D BAU07_02045 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D BAU07_06675 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D BAU07_16135 cupin K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D BAU07_15015 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D BAU07_25185 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_10555 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_05020 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_03485 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_03975 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_08670 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_01015 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_23405 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_07850 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_10070 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_10770 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_01805 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_24410 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_25345 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BAU07_15795 hypothetical protein K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BAU07_17015 XRE family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D BAU07_11975 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BAU07_24430 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BAU07_04575 hypothetical protein K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D BAU07_02565 hypothetical protein K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D BAU07_01120 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D BAU07_13450 hypothetical protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D BAU07_18140 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D BAU07_14305 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC D BAU07_14020 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D BAU07_23990 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D BAU07_05520 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D BAU07_20745 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D BAU07_13550 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D BAU07_24515 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D BAU07_11960 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D BAU07_13770 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D BAU07_15645 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D BAU07_25445 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BAU07_15615 hypothetical protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BAU07_16240 hypothetical protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BAU07_25220 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BAU07_07540 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BAU07_05045 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BAU07_04255 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BAU07_13115 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BAU07_17270 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BAU07_23180 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D BAU07_12820 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D BAU07_14570 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D BAU07_04620 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D BAU07_03840 hypothetical protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes C DeoR family D BAU07_15890 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D BAU07_25870 hypothetical protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D BAU07_13270 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BAU07_14330 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BAU07_10800 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BAU07_24435 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BAU07_00470 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BAU07_00810 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D BAU07_18745 hypothetical protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D BAU07_21395 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BAU07_11160 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BAU07_12780 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BAU07_04365 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_12170 hypothetical protein K03710 K03710; GntR family transcriptional regulator D BAU07_13595 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_07950 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_17165 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_08545 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_07035 hypothetical protein K03710 K03710; GntR family transcriptional regulator D BAU07_01105 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_24785 hypothetical protein K03710 K03710; GntR family transcriptional regulator D BAU07_18675 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BAU07_20000 hypothetical protein K03710 K03710; GntR family transcriptional regulator D BAU07_12330 hypothetical protein K03710 K03710; GntR family transcriptional regulator D BAU07_13745 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_14090 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_09780 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_22100 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_05155 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_15725 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_20515 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_02750 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_07425 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BAU07_03075 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BAU07_10815 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BAU07_02020 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BAU07_00415 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BAU07_13230 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D BAU07_24125 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D BAU07_03425 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BAU07_02000 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BAU07_06605 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BAU07_14275 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BAU07_10640 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BAU07_03570 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BAU07_10655 hypothetical protein K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D BAU07_01625 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D BAU07_02880 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D BAU07_05870 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BAU07_00290 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BAU07_11575 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BAU07_00925 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BAU07_11390 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BAU07_06060 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family C MarR family D BAU07_11065 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BAU07_16125 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D BAU07_14615 hypothetical protein K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D BAU07_17850 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BAU07_10505 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BAU07_15845 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BAU07_15550 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D BAU07_14820 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BAU07_20440 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BAU07_24705 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BAU07_20715 hypothetical protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D BAU07_04700 hypothetical protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BAU07_23720 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BAU07_20830 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BAU07_01275 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BAU07_01745 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BAU07_02455 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BAU07_12245 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BAU07_14260 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D BAU07_19885 hypothetical protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D BAU07_24380 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BAU07_13905 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D BAU07_10135 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D BAU07_13015 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D BAU07_21255 transcriptional regulator K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator C PadR family C Other families D BAU07_06930 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BAU07_24815 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BAU07_20935 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BAU07_06650 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D BAU07_13935 nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D BAU07_14425 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D BAU07_09910 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D BAU07_07725 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BAU07_25880 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BAU07_19010 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BAU07_20425 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BAU07_08445 phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D BAU07_12615 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D BAU07_07515 transcriptional regulator K07734 paiB; transcriptional regulator D BAU07_22875 hypothetical protein K07735 algH; putative transcriptional regulator D BAU07_24715 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BAU07_22615 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BAU07_05940 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0