+F Repair protein KO
#
DNA Repair and Recombination Proteins - Burkholderia gladioli ATCC 10248
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BM43_765 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BM43_4581 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BM43_305 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BM43_1857 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BM43_5607 DNA-3-methyladenine glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BM43_998 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BM43_530 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E BM43_5148 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BM43_2629 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BM43_1902 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BM43_715 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BM43_765 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BM43_4581 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BM43_1370 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BM43_305 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BM43_1857 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BM43_1562 uracil DNA glycosylase superfamily protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E BM43_5713 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BM43_3878 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BM43_3820 putative DNA metabolism protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BM43_103 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BM43_1369 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BM43_5607 DNA-3-methyladenine glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BM43_998 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BM43_3134 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BM43_1582 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BM43_999 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BM43_530 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BM43_1328 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BM43_275 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BM43_238 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BM43_3860 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BM43_5810 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BM43_980 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BM43_5662 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BM43_340 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BM43_2443 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BM43_2980 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BM43_5810 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BM43_3860 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BM43_1677 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BM43_1678 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BM43_1721 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BM43_2291 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BM43_3739 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BM43_210 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BM43_2076 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BM43_748 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BM43_5805 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BM43_516 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BM43_7357 DNA polymerase III beta subunit, central domain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BM43_1401 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BM43_660 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BM43_1975 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BM43_3681 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BM43_2537 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BM43_2663 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BM43_2299 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BM43_3622 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BM43_3860 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BM43_2980 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BM43_978 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
E BM43_7320 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
E BM43_173 D12 class N6 adenine-specific DNA methyltransferase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BM43_2514 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E BM43_2513 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E BM43_2515 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BM43_841 recA; protein RecA K03553 recA; recombination protein RecA
E BM43_2005 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BM43_2004 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BM43_2006 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM43_1491 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BM43_3665 putative primosomal replication protein n K02686 priB; primosomal replication protein N
E BM43_7383 AAA domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BM43_7381 calcineurin-like phosphoesterase superfamily domain protein K03547 sbcD; DNA repair protein SbcD/Mre11
E BM43_5356 calcineurin-like phosphoesterase family protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BM43_841 recA; protein RecA K03553 recA; recombination protein RecA
E BM43_3873 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BM43_2036 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BM43_1393 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BM43_238 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BM43_2436 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BM43_3620 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BM43_2058 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BM43_2005 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BM43_2004 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BM43_2006 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E BM43_7383 AAA domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BM43_7381 calcineurin-like phosphoesterase superfamily domain protein K03547 sbcD; DNA repair protein SbcD/Mre11
E BM43_5356 calcineurin-like phosphoesterase family protein K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BM43_2576 Ku protein K10979 ku; DNA end-binding protein Ku
E BM43_2577 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BM43_2334 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BM43_1402 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BM43_5729 eukaryotic DNA topoisomerase I, catalytic core family protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BM43_1447 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
F BM43_3981 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
F BM43_3712 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BM43_238 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BM43_2436 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BM43_3620 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BM43_3860 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BM43_2008 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F BM43_3015 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F BM43_2343 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F BM43_1689 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BM43_980 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BM43_5662 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BM43_340 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F BM43_1616 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_4603 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_5436 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_6330 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_6631 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_3921 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_1585 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_4416 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_7391 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_7402 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_7408 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BM43_5083 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BM43_264 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BM43_7596 hypothetical protein K03502 umuC; DNA polymerase V
D BM43_7597 peptidase S24-like family protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D BM43_841 recA; protein RecA K03553 recA; recombination protein RecA
D BM43_3241 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BM43_2058 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BM43_6976 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7]
D BM43_1030 putative cell division inhibitor protein K14160 imuA; protein ImuA
D BM43_7395 putative cell division inhibitor protein K14160 imuA; protein ImuA
D BM43_1029 impB/mucB/samB family protein K14161 imuB; protein ImuB
D BM43_7394 impB/mucB/samB family protein K14161 imuB; protein ImuB
D BM43_1028 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BM43_7393 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BM43_978 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D BM43_7320 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D BM43_840 recX family protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BM43_1516 hypothetical protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D BM43_3590 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BM43_4598 DEAD/H associated family protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BM43_2329 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BM43_2629 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BM43_1902 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BM43_715 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BM43_1924 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BM43_1925 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024