+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia plantarii PG1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BGL_2c08570 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGL_2c06290 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGL_1c30670 ogt; methylated-DNA--protein-cysteinemethyl transferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGL_1c26870 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BGL_1c04040 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BGL_1c32960 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BGL_1c28540 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BGL_2c13650 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BGL_2c23460 MutT/nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGL_1c04610 mutT; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGL_1c11890 NUdiX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGL_1c30220 deoxyuridine 5'-triphosphatenucleotidohydrolaseDut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BGL_2c08570 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGL_2c06290 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGL_1c30670 ogt; methylated-DNA--protein-cysteinemethyl transferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGL_1c36180 ada; regulatory protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BGL_1c26870 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BGL_2c17260 deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E BGL_1c04040 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BGL_1c01270 uracil-DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E BGL_2c00500 putative phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BGL_1c20820 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BGL_1c24840 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BGL_1c36170 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BGL_1c25380 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BGL_1c32960 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BGL_2c08640 tPA; putative 3-methyladenine DNA glycosylase TPA K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BGL_1c01490 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BGL_1c32970 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BGL_1c28540 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BGL_1c35760 exoA; exodeoxyribonuclease ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BGL_1c26570 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BGL_1c26160 putative single-stranded-DNA-specificexonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BGL_2c21520 pola; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BGL_1c32780 uvrA; excinuclease UvrABC, subunit UvrA K03701 uvrA; excinuclease ABC subunit A E BGL_2c20850 uvrA; excinuclease UvrABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BGL_1c27290 uvrB; excinuclease UvrABC, B subunit K03702 uvrB; excinuclease ABC subunit B E BGL_1c10100 uvrC1; excinuclease UvrABC, subunit UvrC K03703 uvrC; excinuclease ABC subunit C E BGL_1c15410 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGL_2c21520 pola; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BGL_1c02450 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BGL_1c02460 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BGL_1c02790 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BGL_1c08640 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BGL_1c23860 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BGL_1c25880 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BGL_1c06300 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BGL_1c30500 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BGL_2c21470 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BGL_1c28410 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BGL_1c00020 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BGL_1c29830 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BGL_1c05330 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BGL_1c23150 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BGL_1c08720 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BGL_1c12200 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BGL_1c22550 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BGL_1c15410 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGL_1c32760 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BGL_1c13220 XorII very-short-patch-repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BGL_1c10700 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E BGL_1c10690 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E BGL_1c10710 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BGL_1c31450 recA; protein RecA K03553 recA; recombination protein RecA E BGL_1c05630 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BGL_1c05620 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BGL_1c05640 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BGL_1c00770 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BGL_1c22990 putative primosomal replication protein K02686 priB; primosomal replication protein N E BGL_2c16670 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BGL_1c31450 recA; protein RecA K03553 recA; recombination protein RecA E BGL_1c24790 ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E BGL_1c05930 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BGL_2c28170 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BGL_1c26160 putative single-stranded-DNA-specificexonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BGL_1c10030 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BGL_1c22530 recR; recombination protein RecR K06187 recR; recombination protein RecR E BGL_1c06130 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BGL_1c05630 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BGL_1c05620 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BGL_1c05640 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E BGL_1c18810 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E BGL_2c16670 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BGL_1c11430 hypothetical protein K10979 ku; DNA end-binding protein Ku E BGL_1c11440 DNA primase, small subunit K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BGL_1c09080 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BGL_1c00030 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BGL_2c11630 DNA topoisomerase, type I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BGL_1c00380 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta F BGL_1c23520 putative dna-binding protein hu-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BGL_1c26160 putative single-stranded-DNA-specificexonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BGL_1c10030 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BGL_1c22530 recR; recombination protein RecR K06187 recR; recombination protein RecR F BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BGL_1c05660 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BGL_1c15750 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F BGL_1c09160 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F BGL_1c02480 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BGL_1c32780 uvrA; excinuclease UvrABC, subunit UvrA K03701 uvrA; excinuclease ABC subunit A F BGL_2c20850 uvrA; excinuclease UvrABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BGL_1c27290 uvrB; excinuclease UvrABC, B subunit K03702 uvrB; excinuclease ABC subunit B F BGL_2c28670 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS F BGL_2c12900 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS F BGL_1c19260 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS F BGL_2c26320 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS F BGL_1c01520 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS F BGL_1c01840 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BGL_1c26410 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BGL_1c31450 recA; protein RecA K03553 recA; recombination protein RecA D BGL_1c18130 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BGL_1c06130 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BGL_2c01870 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D BGL_1c33330 hypothetical protein K14160 imuA; protein ImuA D BGL_1c33320 hypothetical protein K14161 imuB; protein ImuB D BGL_1c33310 DNA polymerase III, alpha subunit superfamily protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BGL_1c32760 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BGL_1c31440 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BGL_1c01020 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BGL_1c22230 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BGL_2c20740 ATP-dependent RNA helicase DEAD/DEAH box family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D BGL_2c08760 DEAD/DEAH box helicase-like protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BGL_2c23460 MutT/nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGL_1c04610 mutT; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGL_1c11890 NUdiX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGL_1c30220 deoxyuridine 5'-triphosphatenucleotidohydrolaseDut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BGL_1c04830 nrdA; ribonucleotide-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BGL_2c07110 nrdB; ribonucleotide-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BGL_1c04840 nrdB; ribonucleotide-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024