+F Repair protein KO
#
DNA Repair and Recombination Proteins - Burkholderia plantarii PG1
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BGL_2c08570 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BGL_2c06290 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BGL_1c30670 ogt; methylated-DNA--protein-cysteinemethyl transferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BGL_1c26870 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BGL_1c04040 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BGL_1c32960 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BGL_1c28540 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E BGL_2c13650 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BGL_2c23460 MutT/nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BGL_1c04610 mutT; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BGL_1c11890 NUdiX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BGL_1c30220 deoxyuridine 5'-triphosphatenucleotidohydrolaseDut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BGL_2c08570 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BGL_2c06290 methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BGL_1c30670 ogt; methylated-DNA--protein-cysteinemethyl transferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BGL_1c36180 ada; regulatory protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BGL_1c26870 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D BGL_2c17260 deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E BGL_1c04040 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BGL_1c01270 uracil-DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E BGL_2c00500 putative phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BGL_1c20820 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BGL_1c24840 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BGL_1c36170 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BGL_1c25380 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BGL_1c32960 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BGL_2c08640 tPA; putative 3-methyladenine DNA glycosylase TPA K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BGL_1c01490 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BGL_1c32970 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BGL_1c28540 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BGL_1c35760 exoA; exodeoxyribonuclease ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BGL_1c26570 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BGL_1c26160 putative single-stranded-DNA-specificexonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BGL_2c21520 pola; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BGL_1c32780 uvrA; excinuclease UvrABC, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
E BGL_2c20850 uvrA; excinuclease UvrABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E BGL_1c27290 uvrB; excinuclease UvrABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E BGL_1c10100 uvrC1; excinuclease UvrABC, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
E BGL_1c15410 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BGL_2c21520 pola; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BGL_1c02450 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BGL_1c02460 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BGL_1c02790 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BGL_1c08640 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BGL_1c23860 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BGL_1c25880 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BGL_1c06300 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BGL_1c30500 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BGL_2c21470 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BGL_1c28410 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BGL_1c00020 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BGL_1c29830 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BGL_1c05330 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BGL_1c23150 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BGL_1c08720 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BGL_1c12200 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BGL_1c22550 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BGL_1c15410 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BGL_1c32760 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E BGL_1c13220 XorII very-short-patch-repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BGL_1c10700 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E BGL_1c10690 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E BGL_1c10710 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BGL_1c31450 recA; protein RecA K03553 recA; recombination protein RecA
E BGL_1c05630 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BGL_1c05620 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BGL_1c05640 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BGL_1c00770 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BGL_1c22990 putative primosomal replication protein K02686 priB; primosomal replication protein N
E BGL_2c16670 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BGL_1c31450 recA; protein RecA K03553 recA; recombination protein RecA
E BGL_1c24790 ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
E BGL_1c05930 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BGL_2c28170 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BGL_1c26160 putative single-stranded-DNA-specificexonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BGL_1c10030 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BGL_1c22530 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BGL_1c06130 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BGL_1c05630 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BGL_1c05620 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BGL_1c05640 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E BGL_1c18810 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E BGL_2c16670 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BGL_1c11430 hypothetical protein K10979 ku; DNA end-binding protein Ku
E BGL_1c11440 DNA primase, small subunit K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BGL_1c09080 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BGL_1c00030 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BGL_2c11630 DNA topoisomerase, type I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BGL_1c00380 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
F BGL_1c23520 putative dna-binding protein hu-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BGL_1c26160 putative single-stranded-DNA-specificexonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BGL_1c10030 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BGL_1c22530 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BGL_1c24660 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BGL_1c05660 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F BGL_1c15750 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
F BGL_1c09160 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F BGL_1c02480 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BGL_1c32780 uvrA; excinuclease UvrABC, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
F BGL_2c20850 uvrA; excinuclease UvrABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F BGL_1c27290 uvrB; excinuclease UvrABC, B subunit K03702 uvrB; excinuclease ABC subunit B
F BGL_2c28670 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS
F BGL_2c12900 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS
F BGL_1c19260 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS
F BGL_2c26320 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS
F BGL_1c01520 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS
F BGL_1c01840 histone-like nucleoid-structuring (H-NS) protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BGL_1c26410 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BGL_1c31450 recA; protein RecA K03553 recA; recombination protein RecA
D BGL_1c18130 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BGL_1c06130 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BGL_2c01870 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D BGL_1c33330 hypothetical protein K14160 imuA; protein ImuA
D BGL_1c33320 hypothetical protein K14161 imuB; protein ImuB
D BGL_1c33310 DNA polymerase III, alpha subunit superfamily protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BGL_1c32760 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BGL_1c31440 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BGL_1c01020 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D BGL_1c22230 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BGL_2c20740 ATP-dependent RNA helicase DEAD/DEAH box family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BGL_2c08760 DEAD/DEAH box helicase-like protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BGL_2c23460 MutT/nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BGL_1c04610 mutT; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BGL_1c11890 NUdiX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BGL_1c30220 deoxyuridine 5'-triphosphatenucleotidohydrolaseDut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BGL_1c04830 nrdA; ribonucleotide-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BGL_2c07110 nrdB; ribonucleotide-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BGL_1c04840 nrdB; ribonucleotide-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024