+E Transcription factors KO
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Transcription Factors - Bacillus glycinifermentans
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D BGLY_1520 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BGLY_3344 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BGLY_4314 transcriptional regulator, AraC family K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D BGLY_0421 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D BGLY_0704 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D BGLY_1046 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D BGLY_3152 Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D BGLY_2284 gltC; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BGLY_1040 citR; transcriptional regulator CitR K19242 citR; LysR family transcriptional regulator, repressor for citA
D BGLY_0439 yclA; transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D BGLY_1326 cysL; transcriptional activator of the cysJI operon K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D BGLY_1706 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D BGLY_0321 transcriptional regulator, LysR family K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D BGLY_1646 fruR; DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D BGLY_4283 spoIIID; Stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D BGLY_4638 iolR; HTH-type transcriptional regulator IolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D BGLY_4267 glcR; DeoR family transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D BGLY_2980 ccpN; Transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D BGLY_0496 ycnK; transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D BGLY_4239 rbsR; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BGLY_3523 ccpA; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BGLY_4666 lacR; transcriptional regulator LacR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BGLY_1165 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BGLY_4226 kdgR; transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D BGLY_4572 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D BGLY_3904 exuR; transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D BGLY_2275 LacI family transcription regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D BGLY_3646 araR; transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D BGLY_0816 treR; GntR family transcriptional regulator K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D BGLY_4681 yydK; putative HTH-type transcriptional regulator YydK K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D BGLY_2833 ydhQ; transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D BGLY_3825 DNA-binding transcriptional regulator FrlR K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D BGLY_4711 yvoA; GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BGLY_2101 ymfC; transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BGLY_0292 ycbG; putative HTH-type transcriptional regulator YcbG K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BGLY_4070 yvfI; transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BGLY_0486 gabR; transcriptional regulator GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BGLY_1047 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BGLY_0760 SAM methytransferase K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D BGLY_3588 ytrA; HTH-type transcriptional repressor YtrA K07979 ytrA; GntR family transcriptional regulator
D BGLY_4671 gntR; Gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D BGLY_0667 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D BGLY_3388 ysiA; transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D BGLY_2163 yezE; TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BGLY_1337 transcriptional regulator, TetR family K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D BGLY_3164 transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D BGLY_3106 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BGLY_0528 lrpC; HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BGLY_4253 ywrC; putative HTH-type transcriptional regulator YwrC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D BGLY_3373 gerE; Spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D BGLY_4284 ywoH; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BGLY_1112 hpr; HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D BGLY_1425 ykoM; putative HTH-type transcriptional regulator YkoM K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BGLY_1460 mhqR; HTH-type transcriptional regulator MhqR K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BGLY_1407 ohrR; repressor of ohrA-OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BGLY_2195 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D BGLY_3644 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BGLY_1056 cueR; transcriptional activator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D BGLY_3065 bmrR1; transcriptional regulator K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
D BGLY_2346 yraB; DNA binding K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D BGLY_1422 HTH-type transcriptional regulator TnrA K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D BGLY_0786 ymfP; DNA binding protein YmfP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BGLY_2768 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BGLY_2960 zur; Zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D BGLY_0924 perR; Peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D BGLY_4480 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D BGLY_4399 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BGLY_4529 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D BGLY_4556 arcR; transcriptional regulator Fnr family protein K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator
D BGLY_2343 XRE family transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D BGLY_1034 nsrR; HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BGLY_3203 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D BGLY_2360 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BGLY_2627 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BGLY_2431 czrA; HTH-type transcriptional repressor CzrA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D BGLY_0806 sdpR; transcriptional regulator SdpR K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D BGLY_2913 sinR; HTH-type transcriptional regulator SinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D BGLY_1142 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D BGLY_4089 slr; transcriptional regulator Slr K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D BGLY_3465 padR; transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D BGLY_3055 hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D BGLY_2902 mntR; Transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BGLY_0875 glvR; DEAD/DEAH box helicase K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D BGLY_2653 birA; transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BGLY_4032 yvaO; transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BGLY_4031 rghR; putative transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BGLY_3658 hypothetical protein K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D BGLY_4037 hypothetical protein K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D BGLY_0675 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D BGLY_0054 purR; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D BGLY_0872 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BGLY_3962 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D BGLY_0015 sugar diacid recognition K02647 cdaR; carbohydrate diacid regulator
D BGLY_0431 rocR; transcriptional activator of arginine utilization operons K06714 rocR; arginine utilization regulatory protein
D BGLY_0643 rex; Redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D BGLY_1832 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D BGLY_1026 hypothetical protein K07729 K07729; putative transcriptional regulator
D BGLY_4526 DNA-binding protein K07729 K07729; putative transcriptional regulator
D BGLY_4021 PbsX family transcriptional regulator K07729 K07729; putative transcriptional regulator
D BGLY_3368 hypothetical protein K07729 K07729; putative transcriptional regulator
D BGLY_0963 yazB2; DNA binding protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BGLY_0572 endoAI; transcriptional inhibitor endoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D BGLY_4592 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D BGLY_0866 sacY; transcriptional antiterminator K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator
D BGLY_4422 sacT; transcriptional antiterminator K26932 sacT; sacPA operon transcriptional antiterminator
D BGLY_1588 cryptic beta-glucoside bgl operon antiterminator K03480 glcT; transcriptional antiterminator
D BGLY_0520 mtlR; transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator
D BGLY_2332 transcriptional antiterminator K02538 manR; mannose operon transcriptional activator
D BGLY_4506 BigG family transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator
C Others
D BGLY_3945 csoR; Copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BGLY_3817 transcriptional regulator of the purine degradation operon K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BGLY_0383 hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D BGLY_1657 abh; putative transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BGLY_4029 transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BGLY_0043 abrB; Transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BGLY_0064 spoVT; Stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D BGLY_4728 spo0J; Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BGLY_4732 noc; Nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BGLY_1020 glpP; transcription antiterminator K02443 glpP; glycerol uptake operon antiterminator
D BGLY_2873 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BGLY_4551 arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism
D BGLY_4670 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D BGLY_3009 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BGLY_1278 transcriptional activator TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BGLY_4596 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BGLY_1279 transcriptional regulator TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D BGLY_0091 ctsR; Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D BGLY_4149 hypothetical protein K03973 pspC; phage shock protein C
D BGLY_4051 cggR; Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D BGLY_4613 deoR; Deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator
D BGLY_1245 med; transcriptional activator protein Med K05519 med; transcriptional activator of comK gene
D BGLY_2687 mtrB; Transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D BGLY_1761 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BGLY_4388 rsfA; transcriptional regulatory protein K06314 rsfA; prespore-specific regulator
D BGLY_1722 ylbO; spore coat protein regulator protein YlbO K06314 rsfA; prespore-specific regulator
D BGLY_1594 splA; transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D BGLY_0438 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator
D BGLY_3437 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D BGLY_1158 comK; competence transcription factor ComK K02250 comK; competence protein ComK
D BGLY_1726 mraZ; Transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
D BGLY_3966 hypothetical protein K26991 yvrL; membrane-bound negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0