+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus glycinifermentans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BGLY_1446 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BGLY_4416 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BGLY_4505 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BGLY_0907 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BGLY_2643 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BGLY_4124 yvcI; putative Nudix hydrolase YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGLY_3611 ytkD; hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGLY_0622 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGLY_2218 yncF2; putative deoxyuridine 5'-triphosphate nucleotidohydrolase YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BGLY_1513 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BGLY_2068 yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BGLY_1446 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BGLY_3152 Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BGLY_3153 O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BGLY_4416 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BGLY_0856 yfjP; DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BGLY_4505 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BGLY_0907 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BGLY_3443 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BGLY_2643 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BGLY_2965 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E BGLY_2971 deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E BGLY_3214 recJ; RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BGLY_2042 SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BGLY_0738 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BGLY_3444 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BGLY_4153 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E BGLY_0206 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BGLY_4154 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E BGLY_3383 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E BGLY_1296 yjcD; ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGLY_3922 DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGLY_0737 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGLY_3444 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BGLY_0738 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BGLY_0115 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BGLY_0116 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BGLY_0151 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BGLY_4369 rpoE; putative DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F BGLY_1786 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BGLY_0063 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BGLY_2122 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BGLY_3391 mutS2; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BGLY_2123 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BGLY_2878 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BGLY_2877 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BGLY_3458 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BGLY_2043 yorL1; putative DNA polymerase YorL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BGLY_2045 yorL2; putative DNA polymerase YorL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BGLY_1873 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BGLY_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BGLY_3016 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BGLY_0035 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BGLY_0023 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BGLY_0738 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BGLY_1296 yjcD; ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGLY_3922 DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGLY_0737 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BGLY_4275 ywpH; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E BGLY_4722 ssbA; Single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein E BGLY_4006 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E BGLY_3343 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E BGLY_4689 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BGLY_3199 yrrC; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BGLY_2111 recA; Protein RecA K03553 recA; recombination protein RecA E BGLY_3227 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BGLY_3226 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BGLY_1502 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BGLY_1788 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BGLY_1187 DNA ATP-dependent repair enzyme K03546 sbcC; DNA repair protein SbcC/Rad50 E BGLY_1186 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BGLY_2111 recA; Protein RecA K03553 recA; recombination protein RecA E BGLY_0095 radA; radA-like DNA repair protein K04485 radA; DNA repair protein RadA/Sms E BGLY_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BGLY_1803 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BGLY_3214 recJ; RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BGLY_2042 SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BGLY_2983 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BGLY_0025 recR; Recombination protein RecR K06187 recR; recombination protein RecR E BGLY_2872 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BGLY_2638 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U E BGLY_3227 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BGLY_3226 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BGLY_1502 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BGLY_1185 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BGLY_1184 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BGLY_1187 DNA ATP-dependent repair enzyme K03546 sbcC; DNA repair protein SbcC/Rad50 E BGLY_1186 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BGLY_1427 ykoV; cytochrome c heme-binding site protein K10979 ku; DNA end-binding protein Ku E BGLY_1426 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BGLY_0006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BGLY_0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BGLY_1827 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BGLY_1963 HU-related DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F BGLY_2689 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BGLY_3355 hypothetical protein K07455 recT; recombination protein RecT F BGLY_3214 recJ; RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BGLY_2042 SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BGLY_2983 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BGLY_0025 recR; Recombination protein RecR K06187 recR; recombination protein RecR F BGLY_0738 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BGLY_2446 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BGLY_2713 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BGLY_4153 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F BGLY_0206 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BGLY_4154 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BGLY_2842 dinB1; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BGLY_2799 uvrX; UV-damage repair protein UvrX K03502 umuC; DNA polymerase V C Other SOS response factors D BGLY_2111 recA; Protein RecA K03553 recA; recombination protein RecA D BGLY_2247 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BGLY_2872 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BGLY_4275 ywpH; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D BGLY_4722 ssbA; Single-stranded DNA-binding protein A K03111 ssb; single-strand DNA-binding protein D BGLY_0897 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BGLY_3392 polX; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) C DNA helicases D BGLY_2607 ypvA; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BGLY_2649 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BGLY_4124 yvcI; putative Nudix hydrolase YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGLY_3611 ytkD; hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGLY_0622 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BGLY_2218 yncF2; putative deoxyuridine 5'-triphosphate nucleotidohydrolase YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BGLY_1513 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BGLY_2068 yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BGLY_2061 bnrdE; Ribonucleoside-diphosphate reductase nrdEB subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BGLY_1510 nrdE1; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BGLY_2175 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BGLY_2176 nrdF2; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BGLY_1512 nrdF1; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BGLY_2063 yosP; SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BGLY_3462 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024