+F Repair protein KO
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DNA Repair and Recombination Proteins - Bartonella henselae Houston-1
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BH04820 Methyltransferase (fragment) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BH04540 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BH00810 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BH02020 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BH14690 dut; Deoxyuridine 5 27-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BH04820 Methyltransferase (fragment) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BH05020 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BH04850 DNA polymerase, bacteriophage type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BH04540 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BH12210 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BH02510 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BH00810 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BH10570 xthA1; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BH15490 xthA2; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BH07830 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BH00060 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BH10140 uvrA; Excinuclease ABC subunit a K03701 uvrA; excinuclease ABC subunit A
E BH11720 uvrB; Excinuclease ABC subunit b K03702 uvrB; excinuclease ABC subunit B
E BH05550 uvrC; Excinuclease ABC subunit c K03703 uvrC; excinuclease ABC subunit C
E BH11070 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BH00060 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BH06100 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BH06110 rpoC; DNA-directed RNA polymerase beta prime chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BH10270 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BH05030 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BH08750 mfd; Transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BH01000 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BH02690 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BH12220 xseA; Exodeoxyribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BH04340 xseB; Exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BH09850 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BH01190 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BH05460 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BH16220 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BH08470 dnaC; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BH00050 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BH02320 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BH11070 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BH10130 ssb4; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
E BH09470 ssb3; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
E BH07030 ssb2; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
E BH03540 ssb1; Aingle-strand binding protein SSB K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BH10230 recA; recA protein K03553 recA; recombination protein RecA
E BH14900 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E BH14890 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BH14910 ruvC; Holliday junction nuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BH06960 gp11B; hypothetical genomic island protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BH03610 gp11A; hypothetical prophage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BH15360 priA; Primosomal replication factor y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E BH10230 recA; recA protein K03553 recA; recombination protein RecA
E BH05260 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E BH01200 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E BH09860 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BH07830 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BH05110 recO; DNA repair protein reco K03584 recO; DNA repair protein RecO (recombination protein O)
E BH02300 recR; Recombination protein recR K06187 recR; recombination protein RecR
E BH11150 recN; DNA repair protein recn K03631 recN; DNA repair protein RecN (Recombination protein N)
E BH14900 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E BH14890 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BH14910 ruvC; Holliday junction nuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BH06960 gp11B; hypothetical genomic island protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BH03610 gp11A; hypothetical prophage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E BH00270 addA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BH00280 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BH10120 gyrA; DNA gyrase subunit a K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BH00410 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BH08160 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BH05910 hupB; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BH07830 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BH05110 recO; DNA repair protein reco K03584 recO; DNA repair protein RecO (recombination protein O)
F BH02300 recR; Recombination protein recR K06187 recR; recombination protein RecR
F BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BH07640 ihfA; Integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
F BH00140 ihfB; Integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F BH10140 uvrA; Excinuclease ABC subunit a K03701 uvrA; excinuclease ABC subunit A
F BH11720 uvrB; Excinuclease ABC subunit b K03702 uvrB; excinuclease ABC subunit B
F BH15530 korB; korB protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D BH10230 recA; recA protein K03553 recA; recombination protein RecA
D BH08420 lexA; SOS response regulator lexA protein K01356 lexA; repressor LexA [EC:3.4.21.88]
D BH11150 recN; DNA repair protein recn K03631 recN; DNA repair protein RecN (Recombination protein N)
D BH10130 ssb4; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D BH09470 ssb3; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D BH07030 ssb2; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D BH03540 ssb1; Aingle-strand binding protein SSB K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D BH02020 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BH14690 dut; Deoxyuridine 5 27-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BH01940 nrdE; Ribonucleotide reductase alpha-chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BH01950 nrdF; Ribonucleotide reductase beta-chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024