+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bartonella henselae Houston-1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BH04820 Methyltransferase (fragment) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BH04540 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BH00810 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BH02020 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BH14690 dut; Deoxyuridine 5 27-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BH04820 Methyltransferase (fragment) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BH05020 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BH04850 DNA polymerase, bacteriophage type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BH04540 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BH12210 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BH02510 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BH00810 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BH10570 xthA1; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BH15490 xthA2; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BH07830 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BH00060 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BH10140 uvrA; Excinuclease ABC subunit a K03701 uvrA; excinuclease ABC subunit A E BH11720 uvrB; Excinuclease ABC subunit b K03702 uvrB; excinuclease ABC subunit B E BH05550 uvrC; Excinuclease ABC subunit c K03703 uvrC; excinuclease ABC subunit C E BH11070 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BH00060 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BH06100 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BH06110 rpoC; DNA-directed RNA polymerase beta prime chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BH10270 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BH05030 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BH08750 mfd; Transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BH01000 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BH02690 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BH12220 xseA; Exodeoxyribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BH04340 xseB; Exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BH09850 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BH01190 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BH05460 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BH16220 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BH08470 dnaC; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BH00050 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BH02320 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BH11070 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BH10130 ssb4; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein E BH09470 ssb3; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein E BH07030 ssb2; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein E BH03540 ssb1; Aingle-strand binding protein SSB K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BH10230 recA; recA protein K03553 recA; recombination protein RecA E BH14900 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E BH14890 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BH14910 ruvC; Holliday junction nuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BH06960 gp11B; hypothetical genomic island protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BH03610 gp11A; hypothetical prophage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BH15360 priA; Primosomal replication factor y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E BH10230 recA; recA protein K03553 recA; recombination protein RecA E BH05260 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E BH01200 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E BH09860 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BH07830 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BH05110 recO; DNA repair protein reco K03584 recO; DNA repair protein RecO (recombination protein O) E BH02300 recR; Recombination protein recR K06187 recR; recombination protein RecR E BH11150 recN; DNA repair protein recn K03631 recN; DNA repair protein RecN (Recombination protein N) E BH14900 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E BH14890 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BH14910 ruvC; Holliday junction nuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BH06960 gp11B; hypothetical genomic island protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BH03610 gp11A; hypothetical prophage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BH00270 addA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BH00280 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BH10120 gyrA; DNA gyrase subunit a K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BH00410 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BH08160 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BH05910 hupB; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BH07830 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BH05110 recO; DNA repair protein reco K03584 recO; DNA repair protein RecO (recombination protein O) F BH02300 recR; Recombination protein recR K06187 recR; recombination protein RecR F BH11140 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BH07640 ihfA; Integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F BH00140 ihfB; Integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F BH10140 uvrA; Excinuclease ABC subunit a K03701 uvrA; excinuclease ABC subunit A F BH11720 uvrB; Excinuclease ABC subunit b K03702 uvrB; excinuclease ABC subunit B F BH15530 korB; korB protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D BH10230 recA; recA protein K03553 recA; recombination protein RecA D BH08420 lexA; SOS response regulator lexA protein K01356 lexA; repressor LexA [EC:3.4.21.88] D BH11150 recN; DNA repair protein recn K03631 recN; DNA repair protein RecN (Recombination protein N) D BH10130 ssb4; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D BH09470 ssb3; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D BH07030 ssb2; Single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D BH03540 ssb1; Aingle-strand binding protein SSB K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D BH02020 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BH14690 dut; Deoxyuridine 5 27-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BH01940 nrdE; Ribonucleotide reductase alpha-chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BH01950 nrdF; Ribonucleotide reductase beta-chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024