+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus sp. JS

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MY9_1482 Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MY9_3892 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MY9_3975 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MY9_0952 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MY9_2239 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MY9_0517 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_3521 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_3065 nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_0453 MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_1925 putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MY9_1482 Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MY9_0186 methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D MY9_0187 O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MY9_3892 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MY9_0890 DNA-modified purine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MY9_0184 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MY9_3975 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MY9_0952 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MY9_2899 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MY9_2239 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MY9_4229 ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MY9_2536 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E MY9_3676 YwqL K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E MY9_2744 single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MY9_0738 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MY9_2900 hypothetical protein K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MY9_3560 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E MY9_3561 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E MY9_2839 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E MY9_0737 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MY9_1289 UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MY9_3391 UvrD/Rep family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MY9_2900 hypothetical protein K02335 polA; DNA polymerase I [EC:2.7.7.7] E MY9_0738 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MY9_0107 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MY9_0108 RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MY9_0144 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MY9_3799 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F MY9_1715 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MY9_0054 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MY9_1850 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MY9_2847 recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MY9_1851 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MY9_2452 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MY9_2451 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MY9_2917 DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MY9_1805 DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E MY9_0002 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MY9_2581 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MY9_0031 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MY9_0019 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MY9_0738 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MY9_0737 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MY9_1289 UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MY9_3391 UvrD/Rep family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MY9_4231 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MY9_3697 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MY9_2728 helicase, RecD/TraA family protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MY9_1840 recombinase A K03553 recA; recombination protein RecA E MY9_2757 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MY9_2756 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MY9_1717 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E MY9_1163 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MY9_1162 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MY9_1840 recombinase A K03553 recA; recombination protein RecA E MY9_0086 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E MY9_0004 recombination protein F K03629 recF; DNA replication and repair protein RecF E MY9_1733 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MY9_2744 single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MY9_2551 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E MY9_0021 recombination protein RecR K06187 recR; recombination protein RecR E MY9_2445 DNA repair and recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) E MY9_2236 Holliday junction-specific endonuclease K03700 recU; recombination protein U E MY9_2757 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MY9_2756 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E MY9_1161 ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E MY9_1160 ATP-dependent nuclease subunit AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E MY9_1163 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MY9_1162 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MY9_1469 ATP-dependent DNA ligase subunit K10979 ku; DNA end-binding protein Ku E MY9_1468 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MY9_0007 GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MY9_0006 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MY9_1758 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MY9_2287 non-specific DNA-binding protein HBsu K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MY9_2744 single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MY9_2551 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F MY9_0021 recombination protein RecR K06187 recR; recombination protein RecR F MY9_0738 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MY9_2103 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MY9_2313 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MY9_3560 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F MY9_3561 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MY9_2406 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D MY9_1840 recombinase A K03553 recA; recombination protein RecA D MY9_1950 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D MY9_2445 DNA repair and recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) D MY9_4231 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MY9_3697 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MY9_0940 RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D MY9_2848 PHP domain-containing protein K02347 polX; DNA polymerase (family X) C DNA helicases D MY9_2219 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MY9_2245 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D MY9_0517 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_3521 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_3065 nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_0453 MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MY9_1925 putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MY9_1889 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MY9_1890 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MY9_2922 oligoribonuclease K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024