+E Transcription factors KO
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Transcription Factors - Halalkalibacter krulwichiae
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BkAM31D_23160 tetD_1; Transposon Tn10 TetD protein K13653 K13653; AraC family transcriptional regulator
D BkAM31D_23250 Bacterial transcription activator, effector binding domain K13653 K13653; AraC family transcriptional regulator
C LysR family
D BkAM31D_12260 gltC_1; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BkAM31D_02790 cynR_1; HTH-type transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D BkAM31D_23530 gltC_4; HTH-type transcriptional regulator GltC K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D BkAM31D_11725 cysL_2; HTH-type transcriptional regulator CysL K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D BkAM31D_03300 glcR; HTH-type transcriptional repressor GlcR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D BkAM31D_24305 spoIIID; Stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D BkAM31D_05425 ccpN; Transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D BkAM31D_18955 ccpA_3; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BkAM31D_23605 ccpA_4; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BkAM31D_06575 ccpA_1; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BkAM31D_08625 degA_2; HTH-type transcriptional regulator DegA K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BkAM31D_21640 degA_4; HTH-type transcriptional regulator DegA K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BkAM31D_09795 rbsR_1; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BkAM31D_01580 kdgR_1; HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D BkAM31D_16270 cytR_2; HTH-type transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BkAM31D_02585 degA_1; HTH-type transcriptional regulator DegA K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BkAM31D_15935 degA_3; HTH-type transcriptional regulator DegA K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BkAM31D_09540 galS; HTH-type transcriptional regulator GalS K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D BkAM31D_03280 treR; Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D BkAM31D_22545 yvoA_4; HTH-type transcriptional repressor YvoA K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BkAM31D_03940 yvoA_1; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator
D BkAM31D_14460 yegW; putative HTH-type transcriptional regulator YegW K03710 K03710; GntR family transcriptional regulator
D BkAM31D_07830 yvoA_2; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator
D BkAM31D_15820 lldR_2; Putative L-lactate dehydrogenase operon regulatory protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BkAM31D_10745 lutR_2; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BkAM31D_18700 lutR_3; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BkAM31D_07050 ytrA_1; HTH-type transcriptional repressor YtrA K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D BkAM31D_18435 fadR_2; Fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
C Lrp/AsnC family
D BkAM31D_03405 lrpC; HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D BkAM31D_18365 gerE_3; Spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D BkAM31D_06970 slyA; Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BkAM31D_04460 hpr; HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D BkAM31D_11880 mhqR_1; HTH-type transcriptional regulator MhqR K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BkAM31D_24265 hosA_2; Transcriptional regulator HosA K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BkAM31D_08680 hosA_1; Transcriptional regulator HosA K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BkAM31D_24775 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D BkAM31D_10810 ycgE; HTH-type transcriptional repressor YcgE K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D BkAM31D_06035 tnrA; HTH-type transcriptional regulator TnrA K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
C Fur family
D BkAM31D_06255 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BkAM31D_05550 zur; Zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D BkAM31D_03680 perR; Peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D BkAM31D_23420 kdgR_6; Transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BkAM31D_23560 kdgR_7; Pectin degradation repressor protein KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BkAM31D_15910 kdgR_4; Pectin degradation repressor protein KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BkAM31D_08500 kipR_1; HTH-type transcriptional regulator KipR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BkAM31D_08505 kdgR_2; Transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BkAM31D_22175 kipR_2; HTH-type transcriptional regulator KipR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D BkAM31D_12150 fnr_2; Anaerobic regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BkAM31D_23045 yeiL; Regulatory protein YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D BkAM31D_12585 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BkAM31D_04850 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D BkAM31D_17960 aseR; HTH-type transcriptional repressor AseR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BkAM31D_08105 cadC; Cadmium resistance transcriptional regulatory protein CadC K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D BkAM31D_24905 sinR_2; HTH-type transcriptional regulator SinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D BkAM31D_17890 sinR_1; HTH-type transcriptional regulator SinR K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D BkAM31D_22340 lineage-specific thermal regulator protein K10947 K10947; PadR family transcriptional regulator
C Other families
D BkAM31D_16985 mntR; Transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BkAM31D_11145 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BkAM31D_22715 hypothetical protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BkAM31D_22460 opcR; HTH-type transcriptional repressor OpcR K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D BkAM31D_00305 purR_1; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D BkAM31D_23905 acoR_3; Acetoin dehydrogenase operon transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BkAM31D_09980 acoR_1; Acetoin dehydrogenase operon transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BkAM31D_16385 acoR_2; Acetoin dehydrogenase operon transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BkAM31D_02620 Limonene hydroxylase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BkAM31D_21855 zraR_3; Transcriptional regulatory protein ZraR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BkAM31D_05080 cdaR_1; Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D BkAM31D_22110 cdaR_2; Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D BkAM31D_19470 rocR_3; Arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D BkAM31D_19495 rocR_5; Arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D BkAM31D_12440 rocR_1; Arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D BkAM31D_01535 rex; Redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D BkAM31D_14795 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D BkAM31D_23565 hypothetical protein K07727 K07727; putative transcriptional regulator
D BkAM31D_19595 hypothetical protein K07727 K07727; putative transcriptional regulator
D BkAM31D_02215 hypothetical protein K07727 K07727; putative transcriptional regulator
D BkAM31D_06320 helix-turn-helix protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BkAM31D_01310 ndoAI; Antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D BkAM31D_06170 sacY; Levansucrase and sucrase synthesis operon antiterminator K26932 sacT; sacPA operon transcriptional antiterminator
D BkAM31D_03360 glcT; PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
C Others
D BkAM31D_13235 csoR_4; Copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BkAM31D_11420 pucR_5; Purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BkAM31D_03155 pucR_3; Purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BkAM31D_00240 abrB; Transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BkAM31D_00350 spoVT; Stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D BkAM31D_25335 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BkAM31D_25345 noc; Nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BkAM31D_04050 Glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D BkAM31D_16845 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BkAM31D_05260 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BkAM31D_11685 tenA; Thiaminase-2 K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BkAM31D_00555 ctsR; Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D BkAM31D_02960 paaX; Transcriptional repressor PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D BkAM31D_20645 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D BkAM31D_20515 cggR; Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D BkAM31D_17535 Purine-binding protein precursor K05519 med; transcriptional activator of comK gene
D BkAM31D_12510 tmpC_2; Membrane lipoprotein TmpC precursor K05519 med; transcriptional activator of comK gene
D BkAM31D_10950 mtrB; Transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D BkAM31D_15130 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BkAM31D_15325 rsfA_2; Prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D BkAM31D_04830 rsfA_1; Prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D BkAM31D_19895 Transcriptional regulator protein (SplA) K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D BkAM31D_18590 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D BkAM31D_13965 hutP; Hut operon positive regulatory protein K09683 hutP; hut operon positive regulatory protein
D BkAM31D_09595 comK; Competence transcription factor K02250 comK; competence protein ComK
D BkAM31D_15300 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0