+F Repair protein KO #

  DNA Repair and Recombination Proteins - Blastomonas sp. RAC04

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BSY18_1265 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BSY18_3699 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BSY18_3411 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BSY18_3583 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BSY18_3264 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D BSY18_2078 S1/P1 Nuclease family protein K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D BSY18_1043 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSY18_2192 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BSY18_1545 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BSY18_1265 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BSY18_3699 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BSY18_2012 FAD binding domain of DNA photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E BSY18_3411 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BSY18_1533 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BSY18_1620 putative DNA metabolism protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BSY18_971 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BSY18_1558 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BSY18_3583 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BSY18_3273 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BSY18_3264 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BSY18_2676 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BSY18_3173 exodeoxyribonuclease III family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BSY18_1276 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BSY18_2056 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BSY18_1140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BSY18_1312 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BSY18_3570 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BSY18_334 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BSY18_4174 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSY18_2337 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSY18_1140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BSY18_2056 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BSY18_3281 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BSY18_3282 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BSY18_1786 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BSY18_505 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BSY18_1207 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BSY18_2278 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BSY18_1230 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BSY18_3382 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E BSY18_339 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BSY18_2073 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BSY18_618 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BSY18_1408 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BSY18_693 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BSY18_2183 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BSY18_1065 ATPase associated with various cellular activities family protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BSY18_2993 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BSY18_951 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BSY18_2056 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BSY18_4174 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSY18_2337 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSY18_3374 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein E BSY18_3886 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BSY18_1432 recA; protein RecA K03553 recA; recombination protein RecA E BSY18_352 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E BSY18_349 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BSY18_353 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BSY18_1543 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BSY18_3382 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E BSY18_1432 recA; protein RecA K03553 recA; recombination protein RecA E BSY18_1216 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BSY18_2334 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF E BSY18_1205 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BSY18_1276 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BSY18_335 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BSY18_1832 recR; recombination protein RecR K06187 recR; recombination protein RecR E BSY18_2057 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BSY18_352 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E BSY18_349 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BSY18_353 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BSY18_1293 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BSY18_1294 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BSY18_3029 ftsK/SpoIIIE family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E BSY18_4160 DEAD/DEAH box helicase family protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BSY18_2879 Ku protein K10979 ku; DNA end-binding protein Ku E BSY18_2878 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BSY18_589 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BSY18_1091 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BSY18_997 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F BSY18_2964 eukaryotic DNA topoisomerase I, catalytic core family protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BSY18_954 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta F BSY18_2266 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BSY18_1276 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BSY18_335 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BSY18_1832 recR; recombination protein RecR K06187 recR; recombination protein RecR F BSY18_2056 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BSY18_548 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F BSY18_3711 bacterial DNA-binding family protein K05788 ihfB; integration host factor subunit beta E Supressor F BSY18_3382 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F BSY18_1503 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BSY18_1312 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BSY18_3570 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BSY18_1093 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BSY18_1432 recA; protein RecA K03553 recA; recombination protein RecA D BSY18_601 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BSY18_2057 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BSY18_3721 hypothetical protein K14160 imuA; protein ImuA D BSY18_3720 hypothetical protein K14161 imuB; protein ImuB D BSY18_3719 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BSY18_3374 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D BSY18_3886 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D BSY18_3241 recX family protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BSY18_552 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BSY18_1637 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BSY18_1043 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSY18_2192 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BSY18_2060 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BSY18_2062 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024