+F Repair protein KO #

  DNA Repair and Recombination Proteins - Blautia argi

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DQQ01_10355 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E DQQ01_06320 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DQQ01_11360 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DQQ01_02190 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E DQQ01_06745 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E DQQ01_02955 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DQQ01_06525 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DQQ01_00805 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQQ01_05670 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQQ01_00690 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DQQ01_10355 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E DQQ01_06320 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DQQ01_11360 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DQQ01_06745 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E DQQ01_02955 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DQQ01_11775 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DQQ01_08460 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DQQ01_10670 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DQQ01_04265 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DQQ01_08745 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DQQ01_13250 uvrA; ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E DQQ01_12285 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E DQQ01_03130 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E DQQ01_09315 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_05955 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_06620 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_11885 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_08745 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DQQ01_04265 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DQQ01_01575 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DQQ01_03945 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DQQ01_10320 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DQQ01_09105 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E DQQ01_02985 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DQQ01_09100 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DQQ01_06025 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DQQ01_06030 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DQQ01_01055 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DQQ01_11965 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E DQQ01_00255 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DQQ01_07975 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DQQ01_13335 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DQQ01_14975 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DQQ01_02960 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DQQ01_14240 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DQQ01_04265 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DQQ01_09315 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_05955 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_06620 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_11885 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DQQ01_03545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DQQ01_05075 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DQQ01_14670 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DQQ01_12670 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DQQ01_07785 hypothetical protein K03111 ssb; single-strand DNA-binding protein E DQQ01_13860 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DQQ01_01685 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DQQ01_13240 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DQQ01_07795 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DQQ01_06130 recA; recombinase RecA K03553 recA; recombination protein RecA E DQQ01_10075 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DQQ01_10070 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DQQ01_05000 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DQQ01_09255 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E DQQ01_09260 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E DQQ01_09265 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DQQ01_06130 recA; recombinase RecA K03553 recA; recombination protein RecA E DQQ01_11485 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DQQ01_00245 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E DQQ01_10005 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DQQ01_00820 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DQQ01_10670 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DQQ01_11785 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DQQ01_14230 recombination protein RecR K06187 recR; recombination protein RecR E DQQ01_06060 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DQQ01_09905 Holliday junction resolvase RecU K03700 recU; recombination protein U E DQQ01_10075 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DQQ01_10070 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E DQQ01_02285 addA; helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E DQQ01_02280 addB; helicase-exonuclease AddAB subunit AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E DQQ01_09255 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E DQQ01_09260 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E DQQ01_09265 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DQQ01_05560 DNA topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DQQ01_00235 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DQQ01_05555 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DQQ01_00240 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DQQ01_12170 type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DQQ01_13645 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DQQ01_10670 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DQQ01_11785 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DQQ01_14230 recombination protein RecR K06187 recR; recombination protein RecR F DQQ01_04265 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F DQQ01_14580 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DQQ01_13250 uvrA; ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F DQQ01_12285 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DQQ01_11760 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DQQ01_01220 DNA repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D DQQ01_06130 recA; recombinase RecA K03553 recA; recombination protein RecA D DQQ01_06575 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DQQ01_06060 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DQQ01_03545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQQ01_05075 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQQ01_14670 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQQ01_12670 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DQQ01_07785 hypothetical protein K03111 ssb; single-strand DNA-binding protein D DQQ01_11870 DNA damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D DQQ01_06135 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D DQQ01_06525 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DQQ01_00805 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQQ01_05670 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQQ01_00690 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DQQ01_04690 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DQQ01_09130 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DQQ01_04695 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D DQQ01_05600 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024