+D Transcription factors KO #

  Transcription Factors - Bacillus licheniformis DSM 13 = ATCC 14580

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D BLi02974 putative phage DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BLi03907 btr; transcription activator regulator Btr K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon D BLi00678 putative HTH-type transcriptional regulator K13653 K13653; AraC family transcriptional regulator D BLi01015 ydeE; putative HTH-type transcriptional regulator YdeE K13653 K13653; AraC family transcriptional regulator D BLi02836 adaA; trigger enzyme methylphosphotriester-DNA alkyltransferase AdaA K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C LysR family D BLi02163 gltC; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D BLi01009 citR; transcriptional repressor CitR K19242 citR; LysR family transcriptional regulator, repressor for citA D BLi00425 bsdA; HTH-type transcriptional regulator BsdA K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D BLi01300 cysL; HTH-type transcriptional regulator CysL K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D BLi00317 ytlI; HTH-type transcriptional regulator YtlI K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon C DeoR family D BLi01652 fruR; putative HTH-type transcriptional regulator FruR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D BLi03878 spoIIID; stage III sporulation protein SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D BLi04252 iolR; HTH-type transcriptional regulator IolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D BLi03861 glcR; HTH-type transcriptional repressor GlcR K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D BLi02716 ccpN; transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D BLi00481 ycnK; HTH-type transcriptional repressor K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor C LacI family D BLi01139 msmR; putative HTH-type transcriptional regulator MsmR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BLi03125 ccpA2; catabolite control protein CcpA K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BLi03840 rbsR; ribose operon repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BLi04281 ganR; HTH-type transcriptional regulator GanR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BLi03828 kdgR1; HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D BLi04183 transcriptional repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D BLi03514 exuR; HTH-type transcriptional repressor K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor C GntR family D BLi02061 araR1; arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D BLi03256 araR2; arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D BLi00798 treR; transcription repressor TreR K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D BLi02559 gmuR; HTH-type transcriptional regulator GmuR K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D BLi00336 ybgA; putative HTH-type transcriptional regulator YbgA K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator D BLi04350 yvoA; HTH-type transcriptional repressor K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BLi01907 ymfC; putative HTH-type transcriptional regulator YmfC K03710 K03710; GntR family transcriptional regulator D BLi03676 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BLi00473 gabR; HTH-type transcriptional regulator GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BLi01016 ydeL; putative HTH-type transcriptional regulator YdeL K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BLi03185 ytrA; HTH-type transcriptional repressor K07979 ytrA; GntR family transcriptional regulator D BLi04286 gntR; gluconate operon transcriptional repressor GntR K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor C TetR/AcrR family D BLi00633 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D BLi03002 fadR; fatty acid metabolism transcriptional regulator FadR K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D BLi01311 yxaF; putative HTH-type transcriptional regulator YxaF K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D BLi02849 fatR; HTH-type transcriptional repressor FatR K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon C Lrp/AsnC family D BLi00517 lrpC; DNA-binding protein LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BLi03116 HTH-type transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D BLi02989 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein C MarR family D BLi01078 scoC; HTH-type transcriptional regulator ScoC K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr D BLi00667 ywaE; putative HTH-type transcriptional regulator YwaE K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D BLi01493 ykoM; HTH-type transcriptional regulator YkoM K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D BLi01522 mhqR1; HTH-type transcriptional regulator MhqR K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D BLi02022 mhqR2; HTH-type transcriptional regulator MhqR K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D BLi01415 ohrR; transcriptional repressor OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BLi02988 ysmB; HTH-type transcriptional regulator YsmB K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BLi01992 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D BLi01027 cueR; transcriptional regulator CueR K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D BLi02784 bmrR; HTH transcriptional regulator BmrR K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene D BLi02098 yraB; putative HTH-type transcriptional regulator YraB K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D BLi01490 tnrA; HTH-type transcriptional regulator TnrA K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator D BLi00773 yfmP; HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon C Fur family D BLi02503 fur; ferric uptake regulation protein Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BLi02686 zur; zinc-specific metallo-regulatory protein Zur K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D BLi00900 perR1; transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D BLi01971 FUR family transcriptional regulator protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D BLi04114 perR2; transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D BLi04073 kdgR2; HTH-type transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D BLi04167 arcR; HTH-type transcriptional regulator ArcR K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator C Rrf2 family D BLi01005 nsrR; nitric oxide-responsive regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D BLi02877 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D BLi02124 aseR; HTH-type transcriptional repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BLi02201 czrA; HTH-type transcriptional repressor K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D BLi00787 sdpR; transcriptional repressor SdpR K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons C XRE family D BLi02636 sinR; HTH-type transcriptional regulator SinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation D BLi03695 slrR; HTH-type transcriptional regulator SlrR K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator C PadR family D BLi03079 HTH-type transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D BLi01405 putative transcriptional regulator K10947 K10947; PadR family transcriptional regulator D BLi04098 HTH-type transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D BLi02623 mntR; HTH-type transcription regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D BLi00856 malR1; two-component response regulator MalR K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator D BLi00279 blaI; penicillinase repressor BlaI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D BLi02379 birA; trigger enzyme biotin-protein ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BLi03703 putative transcriptional regulator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D BLi03646 rghR1; HTH-type transcriptional regulator RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator D BLi03647 rghR2; HTH-type transcriptional regulator RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator D BLi03271 yuaC; HTH-type transcriptional regulator YuaC K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator D BLi03652 yvbF; HTH-type transcriptional regulator YvbF K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D BLi00645 yrhO; putative transcriptional regulator YrhO K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D BLi00060 purR; purine operon repressor PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor D BLi00853 acoR; transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BLi03576 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA D BLi00020 ysfB; putative sugar diacid recognition protein YsfB K02647 cdaR; carbohydrate diacid regulator D BLi00421 rocR; arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein D BLi00618 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D BLi01837 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D BLi01580 yozG; putative HTH-type transcriptional regulator YozG K07727 K07727; putative transcriptional regulator D BLi00575 putative phage protein K07729 K07729; putative transcriptional regulator D BLi00755 putative HTH-type transcriptional regulator K07729 K07729; putative transcriptional regulator D BLi00946 ygzD; putative HTH-type transcriptional regulator YgzD K07729 K07729; putative transcriptional regulator D BLi00999 putative HTH-type transcriptional regulator K07729 K07729; putative transcriptional regulator D BLi04122 lanR; putative regulatory protein LanR K07729 K07729; putative transcriptional regulator D BLi05017 phage putative repressor K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D BLi00552 ndoAI; antitoxin NdoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D BLi00750 putative RNA-binding protein K03488 licT; beta-glucoside operon transcriptional antiterminator D BLi04201 licT; transcriptional antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator D BLi00843 sacY; transcriptional antiterminator SacY K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator D BLi04018 sacT; antiterminator SacT K26932 sacT; sacPA operon transcriptional antiterminator D BLi01597 glcT; transcriptional antiterminator GlcT K03480 glcT; transcriptional antiterminator D BLi00508 mtlR; transcriptional activator MtlR K03483 mtlR; mannitol operon transcriptional activator D BLi02111 manR; putative transcriptional regulator ManR K02538 manR; mannose operon transcriptional activator D BLi04090 licR; transcriptional activator LicR K03491 licR; probable licABCH operon transcriptional regulator C Others D BLi03555 csoR; copper-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D BLi01125 pucR1; purine catabolism transcriptional regulator PucR K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D BLi03436 pucR2; purine catabolism regulatory protein PucR K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D BLi00376 ycgP; YcgP K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator D BLi00050 abrB1; transition state transcriptional regulator AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D BLi01664 abrB2; transition state transcriptional regulator AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D BLi03644 transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D BLi00069 spoVT; stage V sporulation protein SpoVT K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D BLi04368 spo0J; stage 0 sporulation protein Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BLi04372 noc; nucleoid occlusion protein Noc K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BLi00993 glpP; transcriptional antiterminator GlpP K02443 glpP; glycerol uptake operon antiterminator D BLi02596 ahrC1; arginine regulator AhrC K03402 argR; transcriptional regulator of arginine metabolism D BLi04162 ahrC2; arginine regulator AhrC K03402 argR; transcriptional regulator of arginine metabolism D BLi04285 putative HTH-type transcriptional repressor K02565 nagC; N-acetylglucosamine repressor D BLi02741 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BLi01259 tenA; thiaminase TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D BLi04205 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D BLi01260 tenI; regulatory protein TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D BLi00101 ctsR; transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D BLi03666 cggR; repressor CggR K05311 cggR; central glycolytic genes regulator D BLi04230 deoR; transcriptional repressor DeoR K05346 deoR; deoxyribonucleoside regulator D BLi01218 med; transcriptional activator protein Med K05519 med; transcriptional activator of comK gene D BLi02412 mtrB; transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D BLi01767 pyrR; transcriptional antiterminator PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D BLi01726 gerR; putative transcriptional regulator GerR K06314 rsfA; prespore-specific regulator D BLi03985 rsfA; putative transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator D BLi01601 splA; transcriptional repressor SplA K06315 splA; transcriptional regulator of the spore photoproduct lyase operon D BLi00583 paiB; transcriptional repressor PaiB K07734 paiB; transcriptional regulator D BLi03048 ytcG; transcriptional repressor K07738 nrdR; transcriptional repressor NrdR D BLi01119 comK; competence transcription factor ComK K02250 comK; competence protein ComK D BLi01730 mraZ; putative DNA-binding protein MraZ K03925 mraZ; transcriptional regulator MraZ D BLi03581 yvrL; transmembrane protein YvrL K26991 yvrL; membrane-bound negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 3, 2025 #
Classification taken and modified from TRANSFAC 7.0