+E Ribosome biogenesis KO
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Ribosome Biogenesis - Bacillus paralicheniformis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BaLi_c18470 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BaLi_c28020 era; GTP-binding protein Era K03595 era; GTPase
C BaLi_c30160 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BaLi_c19190 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C BaLi_c26890 nusB; transcription termination factor NusB K03625 nusB; transcription antitermination protein NusB
C BaLi_c01200 nusG; transcription antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BaLi_c32260 ytzG; putative pseudouridylate synthase YtzG K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BaLi_c00570 rsmA; dimethyladenosine 16S ribosomal RNA transferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BaLi_c18280 rsmB; rRNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BaLi_c01250 ybxB; RNA methyltransferase YbxB K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BaLi_c17530 ylbH; putative rRNA methyltransferase YlbH K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BaLi_c28180 rsmE; ribosomal RNA small subunit methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BaLi_c43550 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BaLi_c17650 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BaLi_c00510 yabC; putative S-adenosylmethionine-dependent methyltransferase YabC K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BaLi_c26830 yqxC; hemolysin-like protein YqxC K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BaLi_c17880 yxjB; putative ribosomal RNA methyltransferase YxjB K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D BaLi_c01150 yacO; tRNA/rRNA methyltransferase YacO K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BaLi_c43060 yydA; rRNA large subunit methyltransferase YydA K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BaLi_c40700 ywbD; putative S-adenosylmethionine-dependent methyltransferase YwbD K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BaLi_c18290 rlmN; rRNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BaLi_c26830 yqxC; hemolysin-like protein YqxC K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BaLi_c08300 yefA; putative RNA methyltransferase YefA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BaLi_c09360 yfjO; putative RNA methyltransferase YfjO K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BaLi_c25470 rluB; ribosomal large subunit pseudouridine synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BaLi_c13910 yjbO; pseudouridylate synthase YjbO K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BaLi_c17990 rluD; pseudouridylate synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BaLi_c10860 yhcT; putative RNA pseudouridine synthase YhcT K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BaLi_c28970 ermD; rRNA adenine N-6-methyltransferase K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
B ribosomal protein modification factors
C BaLi_c06580 rimI; ribosomal protein alanine N-acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BaLi_c08270 yjcK; putative N-acetyltransferase YjcK K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C BaLi_c05480 ydaF; putative ribosomal protein N-acetyltransferase YdaF K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C BaLi_c18550 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C BaLi_c11570 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C BaLi_c28190 prmA; ribosomal protein L11 methyltransferase PrmA K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C BaLi_c18470 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BaLi_c29680 yrrK; putative holliday junction resolvase YrrK K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C BaLi_c01140 mrnC; ribonuclease K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C BaLi_c42110 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C BaLi_c05680 cshA; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C BaLi_c27800 cshB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C BaLi_c28020 era; GTP-binding protein Era K03595 era; GTPase
C BaLi_c12990 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BaLi_c18320 cpgA; GTPase CpgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BaLi_c25080 engA; GTPase EngA K03977 engA; GTPase
C BaLi_c30160 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C BaLi_c18580 rbgA; ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
C BaLi_c20480 ynbA; putative GTP-binding protein YnbA K03665 hflX; GTPase
C BaLi_c28450 yqeH; ribosomal assembly GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C BaLi_c39550 ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BaLi_c29850 relA; GTP pyrophosphokinase RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BaLi_c19240 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BaLi_c19180 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C BaLi_c00030 yaaA; RNA binding protein YaaA K14761 rlbA; ribosome-associated protein
C BaLi_c28400 yqeL; YqeL K09710 ybeB; ribosome-associated protein
C BaLi_c28050 yqfG; putative metal-dependent hydrolase YqfG K07042 ybeY; probable rRNA maturation factor
C BaLi_c28430 yqeI; putative RNA-binding protein YqeI K07574 yhbY; RNA-binding protein
C BaLi_c37730 yvyD; putative ribosome-associated sigma 54 modulation protein YvyD K05808 hpf; ribosome hibernation promoting factor
C BaLi_c43460 yyaF; GTP-dependent nucleic acid-binding protein YyaF K06942 ychF; ribosome-binding ATPase
C BaLi_c17580 ylbN; DUF177 family protein YlbN K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024