+D GENES KO #

  KEGG Orthology (KO) - Burkholderia mallei 23344

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:bmal00010] D DM55_2326 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DM55_86 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DM55_3592 hexose kinase, 1-phosphofructokinase family protein K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D DM55_1799 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DM55_1692 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DM55_2604 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DM55_662 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DM55_1690 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DM55_823 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_1434 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_327 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DM55_1691 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DM55_184 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D DM55_3312 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2233 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2234 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DM55_3550 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_3579 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_442 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_1117 acoD; acetaldehyde dehydrogenase 2 K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D DM55_3989 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_2777 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_674 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_2712 phosphoenolpyruvate carboxykinase family protein K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:bmal00020] D DM55_3319 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D DM55_1508 citrate synthase family protein K01647 CS; citrate synthase [EC:2.3.3.1] D DM55_3330 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D DM55_1777 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D DM55_3092 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D DM55_3093 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_1668 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DM55_1669 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DM55_4019 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D DM55_3322 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DM55_3798 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DM55_3321 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DM55_3324 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DM55_3323 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DM55_3985 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D DM55_1887 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D DM55_3326 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DM55_2712 phosphoenolpyruvate carboxykinase family protein K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D DM55_3312 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2233 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2234 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:bmal00030] D DM55_86 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DM55_2328 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D DM55_2327 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D DM55_2516 lactonase, 7-bladed beta-propeller family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D DM55_4116 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DM55_273 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_274 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_663 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_2502 transaldolase family protein K00616 TALDO1; transaldolase [EC:2.2.1.2] D DM55_3110 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D DM55_3967 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D DM55_3598 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_1390 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D DM55_1075 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DM55_641 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D DM55_640 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DM55_4271 FAD binding domain protein K19813 gdh; glucose dehydrogenase [EC:1.1.5.9] D DM55_3660 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D DM55_1901 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D DM55_638 carbohydrate kinase, thermoresistant glucokinase family protein K00851 idnK; gluconokinase [EC:2.7.1.12] D DM55_3165 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D DM55_2835 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D DM55_1692 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DM55_1799 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DM55_3592 hexose kinase, 1-phosphofructokinase family protein K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:bmal00040] D DM55_4787 SAF domain protein K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D DM55_4786 hypothetical protein K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D DM55_4674 D-mannonate dehydratase K08323 rspA; mannonate dehydratase [EC:4.2.1.8] D DM55_4672 mannitol dehydrogenase Rossmann domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D DM55_4675 zinc-binding dehydrogenase family protein K08322 rspB; L-gulonate 5-dehydrogenase [EC:1.1.1.380] D DM55_1837 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DM55_2143 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_3279 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_4116 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DM55_2966 hypothetical protein K24707 E2.7.1.16; ribulokinase [EC:2.7.1.16] D DM55_4582 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D DM55_1738 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D DM55_1717 hypothetical protein K00854 xylB; xylulokinase [EC:2.7.1.17] D DM55_1739 mannitol dehydrogenase Rossmann domain protein K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D DM55_4585 D-xylulose reductase K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9] D DM55_675 short chain dehydrogenase family protein K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] D DM55_3664 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D DM55_2487 hypothetical protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:bmal00051] D DM55_583 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DM55_1726 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DM55_3459 mannose-6-phosphate isomerase family protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D DM55_1473 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_3458 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_423 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_3287 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D DM55_2487 hypothetical protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D DM55_4782 short chain dehydrogenase family protein K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435] D DM55_4785 amidohydrolase family protein K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120] D DM55_4784 short chain dehydrogenase family protein K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D DM55_4783 ureidoglycolate lyase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26] D DM55_3592 hexose kinase, 1-phosphofructokinase family protein K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D DM55_1799 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DM55_1725 polS; sorbitol dehydrogenase K08261 E1.1.99.21; D-sorbitol dehydrogenase (acceptor) [EC:1.1.99.21] D DM55_1739 mannitol dehydrogenase Rossmann domain protein K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D DM55_1692 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DM55_2604 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DM55_2874 dak; bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D DM55_4049 hypothetical protein K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] D DM55_3289 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D DM55_1487 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D DM55_3967 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D DM55_818 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:bmal00052] D DM55_674 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D DM55_2269 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DM55_2143 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_3279 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_2326 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DM55_3592 hexose kinase, 1-phosphofructokinase family protein K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D DM55_1727 tagatose 6 phosphate kinase family protein K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D DM55_2815 cytolethal distending toxin A/C family protein K04618 GAOA; galactose oxidase [EC:1.1.3.9] D DM55_1652 hypothetical protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D DM55_681 2-keto-3-deoxy-galactonokinase family protein K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D DM55_680 KDPG and KHG aldolase family protein K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] C 00053 Ascorbate and aldarate metabolism [PATH:bmal00053] D DM55_1837 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DM55_3660 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_1560 garL; 5-keto-4-deoxy-D-glucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] D DM55_4804 SMP-30/Gluconolaconase/LRE-like region family protein K13874 araB; L-arabinonolactonase [EC:3.1.1.15] D DM55_3664 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:bmal00500] D DM55_4050 lsdA; levansucrase K00692 sacB; levansucrase [EC:2.4.1.10] D DM55_2143 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_3279 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_3250 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D DM55_3251 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D DM55_4911 bcsA; cellulose synthase catalytic subunit UDP-forming K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D DM55_2794 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D DM55_2796 treS; trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D DM55_2791 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D DM55_2797 alpha amylase, catalytic domain protein K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D DM55_2793 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D DM55_2790 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D DM55_2792 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D DM55_1953 otsA; alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D DM55_1952 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D DM55_4387 trehalase family protein K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_2326 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DM55_86 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DM55_583 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DM55_1726 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bmal00520] D DM55_2993 carbohydrate binding domain protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D DM55_2105 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DM55_1936 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DM55_1023 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D DM55_1024 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D DM55_1027 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D DM55_909 putative N-acetylglucosamine kinase K18676 gspK; glucosamine kinase [EC:2.7.1.8] D DM55_583 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DM55_1726 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D DM55_2699 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_575 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_1026 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_2752 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D DM55_576 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D DM55_1437 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D DM55_1823 gph; phosphoglycolate phosphatase, bacterial K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D DM55_1609 phosphotransferase enzyme family protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D DM55_1608 nucleotidyl transferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D DM55_1234 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DM55_4279 EPSP synthase family protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DM55_1768 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DM55_29 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D DM55_32 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D DM55_3816 3-beta hydroxysteroid dehydrogenase/isomerase family protein K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D DM55_2326 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_2143 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_3279 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_1837 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DM55_2269 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DM55_818 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DM55_86 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DM55_3459 mannose-6-phosphate isomerase family protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D DM55_1473 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_3458 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_423 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_3287 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D DM55_1487 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D DM55_3289 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D DM55_2477 2Fe-2S iron-sulfur cluster binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:bmal00620] D DM55_3989 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_2777 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_3312 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2233 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2234 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3550 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_3579 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DM55_442 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D DM55_3591 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DM55_3590 phosphate acetyl/butaryl transferase family protein K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DM55_1691 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DM55_297 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DM55_693 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DM55_3903 biotin-requiring enzyme family protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DM55_694 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DM55_3902 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DM55_3295 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DM55_3835 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_1117 acoD; acetaldehyde dehydrogenase 2 K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D DM55_4019 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D DM55_4893 FMN-dependent dehydrogenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D DM55_3372 nitronate monooxygenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D DM55_3230 thiamine pyrophosphate enzyme, central domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D DM55_2404 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D DM55_4513 FAD binding domain protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D DM55_1371 FAD binding domain protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D DM55_1615 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D DM55_2738 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D DM55_948 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D DM55_1901 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D DM55_1343 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DM55_669 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DM55_3326 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DM55_3985 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D DM55_1887 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D DM55_2172 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D DM55_2712 phosphoenolpyruvate carboxykinase family protein K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D DM55_184 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D DM55_241 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_2596 HMGL-like family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D DM55_1061 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bmal00630] D DM55_237 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D DM55_3989 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_2777 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_241 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D DM55_3326 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DM55_3319 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D DM55_1508 citrate synthase family protein K01647 CS; citrate synthase [EC:2.3.3.1] D DM55_3330 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3548 phbB; acetoacetyl-CoA reductase family protein K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D DM55_3168 phbB-1; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D DM55_1372 FAD binding domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D DM55_1373 FAD binding domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D DM55_1374 4Fe-4S binding domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D DM55_4290 katB; catalase K03781 katE; catalase [EC:1.11.1.6] D DM55_1901 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D DM55_4115 gph; phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D DM55_2214 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2019 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2380 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_4054 glyA2; serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_1124 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D DM55_1126 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_1125 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D DM55_100 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D DM55_3688 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D DM55_640 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D DM55_4258 oxdD; oxalate decarboxylase oxdD K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2] D DM55_3262 Tat (twin-arginine translocation) pathway signal sequence domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D DM55_1815 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D DM55_1816 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D DM55_3259 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D DM55_1817 thioredoxin-like [2Fe-2S] ferredoxin family protein K00127 fdoI; formate dehydrogenase subunit gamma D DM55_3258 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D DM55_2816 alpha/beta hydrolase fold family protein K01432 AFMID; arylformamidase [EC:3.5.1.9] D DM55_1747 kynB; arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D DM55_4065 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D DM55_1098 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D DM55_2017 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:bmal00640] D DM55_3989 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_2777 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_3591 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DM55_3590 phosphate acetyl/butaryl transferase family protein K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DM55_3786 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D DM55_3787 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D DM55_3788 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_297 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DM55_693 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DM55_3903 biotin-requiring enzyme family protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DM55_694 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DM55_3902 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DM55_3295 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DM55_2289 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_4450 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_1669 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DM55_1668 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DM55_967 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_4451 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_3914 2-methylcitrate synthase/citrate synthase II family protein K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D DM55_3838 mmgE/PrpD family protein K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D DM55_3329 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D DM55_3915 acnD; 2-methylisocitrate dehydratase, Fe/S-dependent K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D DM55_3916 prpF; putative AcnD-accessory protein PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D DM55_3913 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D DM55_2557 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D DM55_4558 iron-containing alcohol dehydrogenase family protein K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:bmal00650] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_75 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_1601 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_796 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_2100 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D DM55_3170 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D DM55_3589 poly-beta-hydroxybutyrate polymerase family protein K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D DM55_2798 esterase, PHB depolymerase family protein K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D DM55_2514 phaZ; polyhydroxyalkanoate depolymerase, intracellular family protein K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D DM55_3548 phbB; acetoacetyl-CoA reductase family protein K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D DM55_3168 phbB-1; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D DM55_3688 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D DM55_3322 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DM55_3798 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DM55_3321 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DM55_3324 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DM55_3323 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DM55_4019 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D DM55_2122 iron-containing alcohol dehydrogenase family protein K00043 gbd; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61] D DM55_3044 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D DM55_3045 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D DM55_3682 3-hydroxybutyrate dehydrogenase family protein K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D DM55_2423 phaZ2; D-(-)-3-hydroxybutyrate oligomer hydrolase K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22] D DM55_3681 putative acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4] D DM55_4729 zinc-binding dehydrogenase family protein K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-] D DM55_4192 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_3505 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2589 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_1120 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2590 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DM55_1183 short chain dehydrogenase family protein K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:bmal00660] D DM55_4192 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_3505 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2589 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_1120 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2590 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DM55_3231 hypothetical protein K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-] D DM55_1669 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D DM55_1668 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D DM55_3232 maoC like domain protein K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D DM55_3233 hpcH/HpaI aldolase/citrate lyase family protein K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D DM55_3307 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D DM55_3305 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D DM55_3304 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:bmal00562] D DM55_4813 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3118 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_4519 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3622 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_306 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DM55_2135 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D DM55_2136 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D DM55_2128 xylose isomerase-like TIM barrel family protein K03335 iolE; inosose dehydratase [EC:4.2.1.44] D DM55_2129 thiamine pyrophosphate enzyme, central domain protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D DM55_2127 kduI/IolB family protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D DM55_2130 pfkB carbohydrate kinase family protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D DM55_967 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_4451 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_2604 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:bmal00190] D DM55_2607 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D DM55_4100 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D DM55_2608 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D DM55_2609 nuoC; dehydrogenase, subunit C family protein K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D DM55_2610 nuoD; NADH dehydrogenase (quinone), D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D DM55_2611 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D DM55_2612 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D DM55_2613 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D DM55_2614 NADH dehydrogenase family protein K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D DM55_2615 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D DM55_2616 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D DM55_2617 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D DM55_2618 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D DM55_2619 proton-translocating NADH-quinone oxidoreductase, chain M family protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D DM55_2620 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D DM55_3416 FAD dependent oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D DM55_3322 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D DM55_3798 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DM55_3321 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D DM55_3324 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D DM55_3323 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D DM55_1216 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D DM55_1215 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D DM55_1214 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D DM55_842 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D DM55_3520 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D DM55_1974 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D DM55_837 cytochrome c oxidase subunit III family protein K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D DM55_834 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D DM55_46 cytochrome C oxidase subunit II, periplasmic domain protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D DM55_833 coxB; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D DM55_835 cytochrome c oxidase assembly CtaG/Cox11 family protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D DM55_841 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DM55_3521 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D DM55_1975 cytochrome c oxidase subunit III family protein K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D DM55_3522 cyoB; cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D DM55_1977 cyaA; ubiquinol oxidase subunit 1 K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D DM55_3523 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D DM55_1978 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D DM55_1019 cydA; cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DM55_3947 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DM55_1020 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DM55_3946 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DM55_2853 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D DM55_1022 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D DM55_2037 cyt; cytochrome c-552 K08738 CYC; cytochrome c D DM55_1107 ph_c-552; cytochrome c K08738 CYC; cytochrome c D DM55_989 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DM55_3581 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DM55_991 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DM55_3588 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DM55_990 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DM55_3580 ATP synthase family protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DM55_988 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D DM55_992 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DM55_3587 ATP synthase, Delta/Epsilon chain, beta-sandwich domain protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DM55_985 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DM55_3584 ATP synthase A chain family protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DM55_987 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DM55_3582 ATP synthase delta (OSCP) subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DM55_986 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DM55_3583 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DM55_2179 inorganic pyrophosphatase family protein K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D DM55_2760 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms [PATH:bmal00710] D DM55_1690 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DM55_662 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DM55_1692 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DM55_1799 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DM55_273 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_274 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_663 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_3110 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D DM55_3967 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D DM55_2604 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DM55_4116 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D DM55_2172 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D DM55_1343 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DM55_669 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D DM55_3326 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:bmal00680] D DM55_4052 fdhA; formaldehyde dehydrogenase, glutathione-independent K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DM55_1720 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D DM55_3262 Tat (twin-arginine translocation) pathway signal sequence domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D DM55_1815 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D DM55_1816 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D DM55_3259 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D DM55_1817 thioredoxin-like [2Fe-2S] ferredoxin family protein K00127 fdoI; formate dehydrogenase subunit gamma D DM55_3258 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D DM55_2380 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_4054 glyA2; serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_327 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DM55_2172 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D DM55_3326 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DM55_2874 dak; bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D DM55_1692 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D DM55_1799 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DM55_3592 hexose kinase, 1-phosphofructokinase family protein K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D DM55_3591 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D DM55_3590 phosphate acetyl/butaryl transferase family protein K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DM55_3989 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_2777 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_184 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D DM55_823 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_1434 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_1540 putative d-3-phosphoglycerate dehydrogenase oxidoreductase protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DM55_1828 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_270 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_3161 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:bmal00910] D DM55_4575 major Facilitator Superfamily protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_2225 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_2226 major Facilitator Superfamily protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_636 major Facilitator Superfamily protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_2224 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D DM55_2223 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D DM55_2221 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D DM55_1064 molybdopterin oxidoreductase family protein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D DM55_1066 nirB; nitrite reductase [NAD(P)H], large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D DM55_1065 rieske [2Fe-2S] domain protein K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D DM55_4576 nirB; nitrite reductase [NAD(P)H], large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D DM55_4577 nirD; nitrite reductase [NAD(P)H], small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D DM55_4646 multicopper oxidase family protein K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D DM55_4685 nirK; nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D DM55_4645 cytochrome C and Quinol oxidase polypeptide I family protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D DM55_2004 cytochrome C and Quinol oxidase polypeptide I family protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D DM55_2868 nosZ; nitrous-oxide reductase, TAT-dependent K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D DM55_1993 dihydroorotate dehydrogenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D DM55_876 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D DM55_3153 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D DM55_634 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D DM55_2214 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2019 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_1252 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D DM55_1251 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D DM55_660 cynS; cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104] D DM55_3011 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DM55_606 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D DM55_2598 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D DM55_659 cynT; carbonic anhydrase 1 K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:bmal00920] D DM55_115 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D DM55_114 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DM55_113 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DM55_112 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D DM55_4907 substrate binding domain of ABC-type glycine betaine transport system family protein K15551 tauA; taurine transport system substrate-binding protein D DM55_4905 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D DM55_4906 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D DM55_4908 taurine catabolism dioxygenase TauD, TfdA family protein K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D DM55_4219 ABC transporter, substrate-binding , aliphatic sulfonates family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_1201 bacterial extracellular solute-binding s, 3 family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_2928 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_2915 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_2931 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_1199 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_2916 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_2930 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_1200 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_2914 ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D DM55_2029 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D DM55_2028 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_268 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_3560 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D DM55_2007 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D DM55_285 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D DM55_2027 adenylylsulfate reductase, thioredoxin dependent family protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D DM55_3761 molybdopterin oxidoreductase Fe4S4 domain protein K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6] D DM55_3760 4Fe-4S dicluster domain protein K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB D DM55_3758 DMSO reductase anchor subunit family protein K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC D DM55_4659 flavodoxin family protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D DM55_4578 FAD binding domain protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D DM55_2706 nitrite and sulphite reductase 4Fe-4S domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D DM55_2025 nitrite and sulphite reductase 4Fe-4S domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D DM55_3413 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D DM55_304 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_3657 hypothetical protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_4485 bacterial transferase hexapeptide family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_448 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D DM55_3290 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D DM55_76 AMP-binding enzyme family protein K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D DM55_4440 AMP-binding enzyme family protein K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D DM55_1850 hypothetical protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D DM55_1600 hypothetical protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:bmal00061] D DM55_297 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D DM55_693 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DM55_3903 biotin-requiring enzyme family protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D DM55_694 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DM55_3902 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D DM55_3295 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D DM55_918 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D DM55_1921 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D DM55_1919 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DM55_2724 mdcH; malonate decarboxylase, epsilon subunit K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DM55_917 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DM55_919 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DM55_1918 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DM55_4306 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DM55_1922 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DM55_2177 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4562 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4156 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_2555 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_1920 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_194 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DM55_256 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_4432 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_2100 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D DM55_4795 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_1764 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_3125 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:bmal00071] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1602 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_75 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_1601 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_796 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_3481 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_432 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_2630 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_1040 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_1176 hypothetical protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D DM55_2391 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DM55_4795 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_1764 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_3125 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_2005 fatty acid desaturase family protein K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D DM55_4196 pyridine nucleotide-disulfide oxidoreductase family protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DM55_3550 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_3579 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis [PATH:bmal00100] D DM55_3941 squalene/phytoene synthase family protein K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:bmal00561] D DM55_100 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_442 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D DM55_2874 dak; bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D DM55_3973 dak1 domain protein K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D DM55_3974 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D DM55_1640 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D DM55_1917 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D DM55_1766 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DM55_1617 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DM55_2451 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DM55_2582 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D DM55_3734 lip; lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D DM55_1844 lipase family protein K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D DM55_2583 glycosyl transferases group 1 family protein K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] C 00564 Glycerophospholipid metabolism [PATH:bmal00564] D DM55_827 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D DM55_1641 FAD dependent oxidoreductase family protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D DM55_1766 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DM55_1617 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DM55_2451 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DM55_2582 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D DM55_4813 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3118 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_4519 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3622 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_1255 ugpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D DM55_4095 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D DM55_2427 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D DM55_1114 ethanolamine ammonia lyase large subunit family protein K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D DM55_1115 ethanolamine ammonia-lyase light chain family protein K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D DM55_1820 hypothetical protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D DM55_200 cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D DM55_2593 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D DM55_3799 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D DM55_2592 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D DM55_671 phosphatidylglycerophosphatase A family protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D DM55_219 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D DM55_1598 phospholipase D family protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D DM55_3509 phospholipase D family protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D DM55_1941 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism D DM55_4813 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3118 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_4519 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3622 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:bmal00600] D DM55_549 glycosyl transferase 2 family protein K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D DM55_1023 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:bmal00592] D DM55_1602 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:bmal01040] D DM55_364 fatty acid desaturase family protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D DM55_88 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D DM55_1606 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:bmal00230] D DM55_2622 NUDIX domain protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_1075 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D DM55_3291 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D DM55_2552 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D DM55_367 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D DM55_2520 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D DM55_83 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D DM55_1466 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D DM55_1695 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D DM55_1694 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D DM55_1693 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D DM55_637 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D DM55_1428 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D DM55_1095 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D DM55_3202 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D DM55_3171 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D DM55_708 phosphoribosyl transferase domain protein K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D DM55_174 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D DM55_3194 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DM55_2357 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D DM55_2410 xdhA; xanthine dehydrogenase, small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D DM55_2411 xdhB; xanthine dehydrogenase, molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D DM55_172 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DM55_956 peptidase C26 family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DM55_1805 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D DM55_2360 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D DM55_703 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM55_3777 ribonucleotide reductase, barrel domain protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM55_702 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DM55_2000 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D DM55_1260 dgt; dGTPase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D DM55_2362 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D DM55_2761 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D DM55_3053 RelA/SpoT family protein K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D DM55_1657 response regulator K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D DM55_3180 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D DM55_698 pfkB carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20] D DM55_3425 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D DM55_1807 add; adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D DM55_773 cpdB; 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D DM55_385 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D DM55_2679 calcineurin-like phosphoesterase family protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D DM55_2452 apaH; apaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D DM55_3560 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D DM55_2007 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D DM55_285 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D DM55_2029 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D DM55_2028 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_268 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_159 uraD; OHCU decarboxylase K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D DM55_161 asp/Glu/Hydantoin racemase family protein K16841 hpxA; allantoin racemase [EC:5.1.99.3] D DM55_160 polysaccharide deacetylase family protein K16842 hpxB; allantoinase [EC:3.5.2.5] D DM55_158 alc; allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D DM55_655 alc; allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D DM55_156 ureidoglycolate hydrolase family protein K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D DM55_653 ureidoglycolate hydrolase family protein K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D DM55_3373 ureidoglycolate lyase K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3] D DM55_2280 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DM55_2281 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D DM55_2282 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D DM55_3011 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:bmal00240] D DM55_2745 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D DM55_2743 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D DM55_2449 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D DM55_622 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D DM55_2450 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D DM55_2904 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D DM55_1342 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D DM55_673 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D DM55_203 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D DM55_3194 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DM55_2547 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D DM55_329 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D DM55_1831 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D DM55_3202 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D DM55_2554 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D DM55_2448 phosphoribosyl transferase domain protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D DM55_773 cpdB; 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D DM55_3594 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D DM55_4822 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D DM55_2000 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D DM55_2072 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D DM55_703 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM55_3777 ribonucleotide reductase, barrel domain protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM55_702 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DM55_63 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D DM55_372 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DM55_3595 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D DM55_1881 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D DM55_2260 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D DM55_2379 ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D DM55_4180 nitroreductase family protein K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:bmal00250] D DM55_361 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D DM55_51 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DM55_4524 iaaA; isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D DM55_3866 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D DM55_4393 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D DM55_1634 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D DM55_24 aminotransferase class-V family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D DM55_561 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DM55_2076 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DM55_265 D-ala D-ala ligase family protein K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DM55_3180 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D DM55_637 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D DM55_2449 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D DM55_1252 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D DM55_1251 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D DM55_634 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D DM55_999 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D DM55_2214 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2019 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2745 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D DM55_2743 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D DM55_4348 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DM55_2699 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_575 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_1026 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_3291 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:bmal00260] D DM55_295 aspartate kinase domain protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D DM55_3302 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DM55_23 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DM55_3427 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D DM55_22 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D DM55_3949 ltaE; low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D DM55_2380 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_4054 glyA2; serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_1901 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D DM55_100 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D DM55_823 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_1434 histidine phosphatase super family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_1540 putative d-3-phosphoglycerate dehydrogenase oxidoreductase protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DM55_1828 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_270 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_3161 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D DM55_2379 ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D DM55_3694 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D DM55_3693 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D DM55_1124 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D DM55_1126 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_1125 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D DM55_2593 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D DM55_4469 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D DM55_4470 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D DM55_4061 ring hydroxylating alpha subunit family protein K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251] D DM55_4062 2Fe-2S iron-sulfur cluster binding domain protein K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251] D DM55_4057 flavin oxidoreductase / NADH oxidase family protein K21833 dgcA; N,N-dimethylglycine/sarcosine dehydrogenase [EC:1.5.7.3] D DM55_4058 4Fe-4S dicluster domain protein K21834 dgcB; N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit D DM55_4059 electron transfer flavodomain protein K25960 etfA; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit alpha D DM55_4060 electron transfer flavodomain protein K25961 etfB; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit beta D DM55_4454 sarcosine oxidase, alpha subunit K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D DM55_4455 sarcosine oxidase, gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D DM55_1122 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DM55_147 psdht; phenylserine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D DM55_1585 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D DM55_1580 putative D-serine deaminase (D-serine dehydratase) protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D DM55_3361 pyridoxal-phosphate dependent enzyme family protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D DM55_3362 putative d-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D DM55_3296 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D DM55_3298 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D DM55_3229 2,4-diaminobutyrate 4-transaminase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D DM55_1047 2,4-diaminobutyrate 4-transaminase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] C 00270 Cysteine and methionine metabolism [PATH:bmal00270] D DM55_304 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_3657 hypothetical protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_4485 bacterial transferase hexapeptide family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_3162 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D DM55_757 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_758 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_1801 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D DM55_464 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D DM55_664 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16] D DM55_4175 autoinducer synthetase family protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D DM55_4903 autoinducer synthetase family protein K20250 cciI; acyl homoserine lactone synthase [EC:2.3.1.184] D DM55_2146 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D DM55_3171 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D DM55_4765 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4139 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4204 aminotransferase class I and II family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D DM55_1945 GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D DM55_881 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D DM55_4507 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D DM55_295 aspartate kinase domain protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D DM55_3302 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DM55_23 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DM55_448 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D DM55_3895 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D DM55_3290 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D DM55_1687 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DM55_1522 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D DM55_816 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D DM55_817 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D DM55_3413 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D DM55_2322 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family protein K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D DM55_3326 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D DM55_1122 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D DM55_1841 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D DM55_1540 putative d-3-phosphoglycerate dehydrogenase oxidoreductase protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DM55_1828 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_270 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:bmal00280] D DM55_1687 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DM55_3786 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D DM55_3787 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D DM55_3788 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3481 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_432 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_2630 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_1040 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D DM55_4643 hypothetical protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_1602 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D DM55_3796 ketopantoate reductase PanE/ApbA family protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D DM55_967 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_4451 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_2289 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_4450 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_4640 D-ala D-ala ligase family protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D DM55_4642 carboxyl transferase domain protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D DM55_4641 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D DM55_3044 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D DM55_3045 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bmal00290] D DM55_147 psdht; phenylserine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D DM55_1585 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D DM55_3307 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D DM55_3305 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D DM55_3304 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D DM55_4192 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_3505 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2589 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_1120 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2590 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DM55_2591 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D DM55_2039 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D DM55_1687 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DM55_24 aminotransferase class-V family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D DM55_2596 HMGL-like family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D DM55_1061 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:bmal00300] D DM55_23 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D DM55_295 aspartate kinase domain protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D DM55_3302 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DM55_2486 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DM55_315 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DM55_650 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D DM55_215 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D DM55_2476 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DM55_2020 aminotransferase class-III family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DM55_214 dapC; succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D DM55_217 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D DM55_462 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D DM55_1037 hypothetical protein K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DM55_1271 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DM55_4662 aminotransferase class I and II family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D DM55_2491 aminotransferase class I and II family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D DM55_749 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D DM55_748 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:bmal00310] D DM55_4661 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D DM55_3093 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2391 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_2110 coA-transferase III family protein K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D DM55_782 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DM55_4233 ornithine cyclodeaminase/mu-crystallin family protein K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:bmal00220] D DM55_3012 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D DM55_1769 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D DM55_561 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DM55_2076 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DM55_265 D-ala D-ala ligase family protein K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DM55_3901 allophanate hydrolase subunit 1 family protein K01941 uca; urea carboxylase [EC:6.3.4.6] D DM55_2280 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DM55_2281 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D DM55_2282 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D DM55_3013 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D DM55_4348 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DM55_2214 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2019 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2745 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D DM55_2743 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D DM55_3011 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D DM55_634 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D DM55_24 aminotransferase class-V family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D DM55_2207 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D DM55_734 argJ; glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D DM55_451 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D DM55_1339 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D DM55_2476 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DM55_2020 aminotransferase class-III family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DM55_146 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:bmal00330] D DM55_4822 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D DM55_2073 hypothetical protein K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D DM55_1529 aguB; N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D DM55_664 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16] D DM55_4647 hypothetical protein K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_4923 speB; agmatinase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7] D DM55_3749 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_4202 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_2574 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_878 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_1966 aruF; arginine/ornithine succinyltransferase, alpha subunit K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D DM55_1967 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D DM55_1969 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D DM55_1965 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D DM55_1968 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D DM55_1970 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D DM55_4666 FAD binding domain protein K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D DM55_1376 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D DM55_999 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D DM55_713 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D DM55_644 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D DM55_3908 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D DM55_782 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DM55_4233 ornithine cyclodeaminase/mu-crystallin family protein K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1] C 00340 Histidine metabolism [PATH:bmal00340] D DM55_1233 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D DM55_3181 hisZ; ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D DM55_1224 hisE; phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D DM55_1225 phosphoribosyl-AMP cyclohydrolase family protein K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D DM55_1227 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D DM55_1228 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D DM55_1226 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D DM55_1230 imidazoleglycerol-phosphate dehydratase family protein K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D DM55_1231 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1072 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1232 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D DM55_2011 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D DM55_2013 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D DM55_2015 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D DM55_2016 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D DM55_2017 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:bmal00350] D DM55_1231 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1072 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_4765 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4139 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_1367 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D DM55_2399 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D DM55_1067 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D DM55_2400 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D DM55_762 fumarylacetoacetate (FAA) hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D DM55_4158 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D DM55_1186 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DM55_3550 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_3579 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_4411 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D DM55_4410 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D DM55_4412 5-carboxymethyl-2-hydroxymuconate isomerase family protein K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D DM55_4408 hpaG; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D DM55_4409 hpaG; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D DM55_4413 hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D DM55_4415 hpcH/HpaI aldolase/citrate lyase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D DM55_4323 fumarylacetoacetate (FAA) hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:bmal00360] D DM55_963 phhA; phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D DM55_4158 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D DM55_1186 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D DM55_4120 paaF; phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D DM55_4121 paaD; phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D DM55_1358 phenylacetic acid catabolic family protein K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D DM55_1359 phenylacetic acid degradation B K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D DM55_1360 phenylacetic acid catabolic family protein K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D DM55_1361 putative phenylacetate-CoA oxygenase, PaaJ subunit K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D DM55_1362 2Fe-2S iron-sulfur cluster binding domain protein K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D DM55_4122 paaB; phenylacetate degradation putative enoyl-CoA hydratase PaaB K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1231 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1072 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_4765 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4139 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_3747 acetyltransferase domain protein K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D DM55_3746 acetyltransferase family protein K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D DM55_1367 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D DM55_3856 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D DM55_1852 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D DM55_782 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DM55_1395 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D DM55_3749 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_4202 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_2574 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_878 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_4184 rieske [2Fe-2S] domain protein K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D DM55_4196 pyridine nucleotide-disulfide oxidoreductase family protein K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D DM55_2396 FAD binding domain protein K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] C 00380 Tryptophan metabolism [PATH:bmal00380] D DM55_1745 kynA; tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D DM55_2816 alpha/beta hydrolase fold family protein K01432 AFMID; arylformamidase [EC:3.5.1.9] D DM55_1747 kynB; arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D DM55_1746 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D DM55_3093 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2391 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3749 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_4202 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_2574 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_878 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_3375 mdlY; mandelamide hydrolase K21801 iaaH; indoleacetamide hydrolase [EC:3.5.1.-] D DM55_4290 katB; catalase K03781 katE; catalase [EC:1.11.1.6] D DM55_1395 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bmal00400] D DM55_1445 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DM55_4540 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DM55_1261 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D DM55_692 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D DM55_686 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D DM55_1262 shikimate kinase family protein K00891 aroK; shikimate kinase [EC:2.7.1.71] D DM55_1636 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D DM55_1637 EPSP synthase family protein K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D DM55_1830 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D DM55_2163 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D DM55_4114 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D DM55_4113 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D DM55_4112 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D DM55_3299 N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D DM55_4111 indole-3-glycerol phosphate synthase family protein K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D DM55_3296 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D DM55_3298 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D DM55_1788 putative chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D DM55_1829 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D DM55_995 pheC; cyclohexadienyl dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D DM55_1231 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1072 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_4765 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4139 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_963 phhA; phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:bmal00410] D DM55_2060 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_2061 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D DM55_2260 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D DM55_2289 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_4450 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_967 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D DM55_4451 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:bmal00430] D DM55_794 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_1645 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_4908 taurine catabolism dioxygenase TauD, TfdA family protein K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D DM55_3590 phosphate acetyl/butaryl transferase family protein K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D DM55_3591 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:bmal00440] D DM55_4014 aepX; phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D DM55_4013 aepY; phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] D DM55_4012 2-aminoethylphosphonate aminotransferase family protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D DM55_1385 bacterial phosphonate metabolism family protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D DM55_1387 phnG; phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D DM55_1386 phnH; phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D DM55_1382 phnL; phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D DM55_1381 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D DM55_1384 phnJ; protein phnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] C 00450 Selenocompound metabolism [PATH:bmal00450] D DM55_3162 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D DM55_757 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_758 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_1801 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D DM55_4204 aminotransferase class I and II family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D DM55_1984 beta-eliminating lyase family protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D DM55_4488 sufS; cysteine desulfurase, SufS family protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D DM55_2335 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D DM55_2029 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D DM55_2028 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_268 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_3256 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D DM55_2068 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:bmal00460] D DM55_3250 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D DM55_3251 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D DM55_794 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_1645 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_51 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D DM55_4524 iaaA; isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D DM55_2380 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_4054 glyA2; serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:bmal00470] D DM55_224 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DM55_782 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DM55_742 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DM55_4348 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DM55_3983 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D DM55_746 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DM55_1580 putative D-serine deaminase (D-serine dehydratase) protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D DM55_3361 pyridoxal-phosphate dependent enzyme family protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D DM55_3362 putative d-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D DM55_2322 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family protein K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D DM55_462 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D DM55_1037 hypothetical protein K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DM55_1271 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D DM55_3664 aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D DM55_3856 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D DM55_1852 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:bmal00480] D DM55_794 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_1645 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_1623 chaC-like family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D DM55_512 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D DM55_3904 lamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D DM55_514 allophanate hydrolase subunit 1 family protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D DM55_513 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D DM55_954 ybdK; carboxylate-amine ligase YbdK K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D DM55_1522 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D DM55_816 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D DM55_817 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D DM55_2034 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D DM55_1802 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DM55_857 peptidase M1 family protein K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DM55_1423 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_4362 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_2634 putative gst-related protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_3685 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_1971 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_3602 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_519 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_560 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D DM55_1777 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D DM55_2328 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D DM55_220 glutathione peroxidase family protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D DM55_738 ahpC/TSA family protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D DM55_664 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:bmal00511] D DM55_1023 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D DM55_429 putative beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis [PATH:bmal00540] D DM55_193 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D DM55_1496 UDP-3-O-acyl N-acetylglycosamine deacetylase family protein K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D DM55_737 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D DM55_195 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D DM55_303 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D DM55_192 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D DM55_388 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D DM55_1093 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D DM55_328 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D DM55_1092 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D DM55_386 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D DM55_2276 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D DM55_463 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D DM55_1059 lipid A 3-O-deacylase family protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D DM55_1109 SIS domain protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D DM55_1489 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D DM55_1838 rfaE; bifunctional protein RfaE K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D DM55_3804 HAD-hyrolase-like family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D DM55_1491 gmhB; D,D-heptose 1,7-bisphosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D DM55_1618 HAD hydrolase, family IIIA domain protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D DM55_768 rfaE; bifunctional protein RfaE K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D DM55_1839 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D DM55_1488 D-glycero-D-manno-heptose 1-phosphate kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168] D DM55_1490 nucleotidyl transferase family protein K15669 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71] D DM55_2274 rfaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D DM55_2350 rfaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D DM55_1685 rfaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D DM55_2532 glycosyltransferase 9 family protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bmal00541] D DM55_2143 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_3279 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D DM55_2269 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D DM55_1837 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D DM55_2454 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DM55_2453 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D DM55_2455 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D DM55_2456 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D DM55_2477 2Fe-2S iron-sulfur cluster binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D DM55_3459 mannose-6-phosphate isomerase family protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D DM55_1473 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_3458 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_423 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D DM55_3287 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D DM55_1487 3-beta hydroxysteroid dehydrogenase/isomerase family protein K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281] D DM55_3289 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D DM55_576 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:bmal00550] D DM55_1234 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DM55_4279 EPSP synthase family protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DM55_1768 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DM55_743 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D DM55_746 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DM55_749 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D DM55_742 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DM55_748 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D DM55_201 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DM55_2296 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DM55_3680 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D DM55_747 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DM55_744 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DM55_685 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D DM55_149 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_1267 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3950 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3753 penicillin binding transpeptidase domain protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_4757 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D DM55_1563 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D DM55_4602 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_4580 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_750 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_781 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DM55_4581 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DM55_1700 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:bmal00552] D DM55_2296 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DM55_3680 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:bmal00543] D DM55_304 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_3657 hypothetical protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D DM55_4485 bacterial transferase hexapeptide family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:bmal00730] D DM55_2670 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D DM55_2443 phosphomethylpyrimidine kinase family protein K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D DM55_226 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D DM55_346 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_3368 beta-eliminating lyase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_1247 FAD dependent oxidoreductase family protein K03153 thiO; glycine oxidase [EC:1.4.3.19] D DM55_3408 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D DM55_1245 thiazole biosynthesis ThiG family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D DM55_1244 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D DM55_3445 thiamine monophosphate synthase/TENI family protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D DM55_670 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D DM55_1867 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D DM55_594 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_595 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_385 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:bmal00740] D DM55_4611 GTP cyclohydrolase II family protein K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D DM55_4174 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D DM55_2314 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D DM55_2316 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D DM55_1630 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D DM55_2313 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D DM55_2315 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D DM55_368 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D DM55_2403 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D DM55_2622 NUDIX domain protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D DM55_4084 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:bmal00750] D DM55_1753 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D DM55_1828 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_270 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_1612 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D DM55_1934 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D DM55_22 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:bmal00760] D DM55_361 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D DM55_4193 hypothetical protein K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D DM55_363 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D DM55_362 nadC; nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D DM55_1898 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D DM55_3202 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D DM55_2550 cytidylyltransferase family protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D DM55_4679 nadE; NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D DM55_2182 nadE; NH(3)-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D DM55_672 ygaD; protein YgaD K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D DM55_74 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D DM55_1451 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D DM55_1418 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D DM55_1419 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D DM55_1417 NAD(P) transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] C 00770 Pantothenate and CoA biosynthesis [PATH:bmal00770] D DM55_4192 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_3505 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2589 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_1120 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D DM55_2590 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D DM55_2591 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D DM55_2039 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D DM55_1460 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D DM55_102 2-dehydropantoate 2-reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D DM55_1743 2-dehydropantoate 2-reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D DM55_1512 2-dehydropantoate 2-reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D DM55_2061 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D DM55_770 coaX; pantothenate kinase, type III family protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D DM55_371 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D DM55_1070 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D DM55_730 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D DM55_1935 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D DM55_3794 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D DM55_2010 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D DM55_1687 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DM55_2260 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D DM55_2060 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:bmal00780] D DM55_831 methyltransferase domain protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D DM55_4306 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DM55_1922 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DM55_2177 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4562 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4156 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_2555 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_1920 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_194 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DM55_256 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_4432 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_600 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D DM55_1497 cys/Met metabolism PLP-dependent enzyme family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D DM55_601 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D DM55_599 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D DM55_598 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D DM55_771 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:bmal00785] D DM55_786 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D DM55_787 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3312 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2233 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D DM55_2234 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D DM55_3092 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D DM55_3093 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D DM55_3786 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D DM55_3787 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D DM55_3788 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D DM55_1124 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D DM55_1126 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DM55_1125 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:bmal00790] D DM55_4715 GTP cyclohydrolase I family protein K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D DM55_4571 GTP cyclohydrolase I family protein K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D DM55_3655 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D DM55_3407 folE2; GTP cyclohydrolase folE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D DM55_594 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_595 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_1597 NUDIX domain protein K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D DM55_578 FolB domain protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D DM55_4456 FolB domain protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D DM55_1462 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D DM55_2751 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D DM55_1875 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D DM55_3294 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D DM55_4611 GTP cyclohydrolase II family protein K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D DM55_4174 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D DM55_2314 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D DM55_1459 pabB; aminodeoxychorismate synthase, component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D DM55_1559 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D DM55_962 pcbd1; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D DM55_963 phhA; phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D DM55_3656 short chain dehydrogenase family protein K03793 PTR1; pteridine reductase [EC:1.5.1.33] D DM55_1558 radical SAM superfamily protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D DM55_1557 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D DM55_1584 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D DM55_260 radical SAM superfamily protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D DM55_1907 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D DM55_1680 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D DM55_19 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D DM55_1870 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D DM55_21 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D DM55_1905 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D DM55_1906 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:bmal00670] D DM55_1875 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D DM55_2230 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D DM55_2380 beta-eliminating lyase family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_4054 glyA2; serine hydroxymethyltransferase 2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D DM55_367 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D DM55_1428 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D DM55_1549 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DM55_30 formyl transferase family protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DM55_1126 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D DM55_757 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_758 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_1881 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D DM55_4065 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D DM55_1098 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D DM55_879 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D DM55_516 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:bmal00860] D DM55_249 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DM55_4088 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D DM55_3827 aminotransferase class-III family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D DM55_2317 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D DM55_1327 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D DM55_2173 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D DM55_996 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D DM55_2551 coproporphyrinogen III oxidase family protein K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D DM55_1990 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D DM55_2293 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D DM55_643 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D DM55_1453 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D DM55_2174 uroporphyrinogen-III synthase HemD family protein K13543 hemDX; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D DM55_2030 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D DM55_4574 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D DM55_842 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D DM55_841 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DM55_2031 cbiX family protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D DM55_2995 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D DM55_2997 cobG; precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D DM55_2994 cobJ; precorrin-3B C17-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D DM55_3001 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D DM55_2985 cobalamin synthesis G family protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D DM55_3000 precorrin-6x reductase CbiJ/CobK family protein K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D DM55_2999 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D DM55_2998 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D DM55_2996 precorrin-8X methylmutase family protein K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D DM55_2983 cobB/CobQ-like glutamine amidotransferase domain protein K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D DM55_2988 cobN; cobaltochelatase, CobN subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D DM55_1370 cob(I)alamin adenosyltransferase, putative K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D DM55_2984 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D DM55_2057 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D DM55_1865 cobD/Cbib family protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D DM55_2055 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D DM55_2054 threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D DM55_2056 cobinamide kinase / cobinamide phosphate guanyltransferase family protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D DM55_2050 cobalamin-5-phosphate synthase family protein K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D DM55_2049 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D DM55_2051 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D DM55_2989 AAA domain family protein K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D DM55_943 pyridoxamine 5'-phosphate oxidase family protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D DM55_3984 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bmal00130] D DM55_2496 UTRA domain protein K03181 ubiC; chorismate lyase [EC:4.1.3.40] D DM55_3357 chorismate lyase family protein K03181 ubiC; chorismate lyase [EC:4.1.3.40] D DM55_1391 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D DM55_2309 ubiD; ubiD decarboxylase family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D DM55_4084 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D DM55_4105 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D DM55_1824 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D DM55_1425 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D DM55_1589 ubiquinone/menaquinone biosynthesis methyltransferase family protein K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D DM55_754 ubiquinone biosynthesis COQ7 family protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D DM55_3893 NADPH-dependent FMN reductase family protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D DM55_1340 flavodoxin family protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D DM55_2158 wrbA; quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D DM55_1367 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:bmal00900] D DM55_3408 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D DM55_199 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D DM55_143 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D DM55_1077 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D DM55_142 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D DM55_3191 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D DM55_3831 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D DM55_356 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_4084 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D DM55_3409 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D DM55_717 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D DM55_201 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DM55_1868 peptidase M48 family protein K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:bmal00909] D DM55_3941 squalene/phytoene synthase family protein K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] D DM55_3714 shc; squalene-hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:bmal00906] D DM55_134 hpnD; squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:bmal00903] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_1576 alpha/beta hydrolase fold family protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:bmal00907] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_1602 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D DM55_273 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_274 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D DM55_663 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products D DM55_4314 FAD binding domain protein K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00253 Tetracycline biosynthesis D DM55_4314 FAD binding domain protein K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00523 Polyketide sugar unit biosynthesis [PATH:bmal00523] D DM55_2454 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DM55_2453 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D DM55_2455 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D DM55_2456 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D DM55_2460 3-beta hydroxysteroid dehydrogenase/isomerase family protein K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D DM55_2453 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:bmal00946] D DM55_3250 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D DM55_3251 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids [PATH:bmal00996] D DM55_4800 P-hydroxycinnamoyl CoA hydratase/lyase K18383 ferB; feruloyl-CoA hydratase/lyase [EC:4.1.2.61] C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:bmal00311] D DM55_4745 cys/Met metabolism PLP-dependent enzyme family protein K04127 cefD; isopenicillin-N epimerase [EC:5.1.1.17] D DM55_3104 penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D DM55_3907 penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D DM55_4239 bla; beta-lactamase Toho-1 K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:bmal00332] D DM55_713 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D DM55_644 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:bmal00261] D DM55_4550 mbtH; protein mbtH K05375 mbtH; MbtH protein D DM55_3031 mbtH-like family protein K05375 mbtH; MbtH protein D DM55_2970 mbtH-like family protein K05375 mbtH; MbtH protein D DM55_2029 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D DM55_2028 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_268 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D DM55_295 aspartate kinase domain protein K00928 lysC; aspartate kinase [EC:2.7.2.4] D DM55_3302 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D DM55_2486 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DM55_315 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D DM55_650 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:bmal00521] D DM55_2326 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D DM55_2273 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D DM55_306 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D DM55_2135 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D DM55_2136 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D DM55_2454 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DM55_2453 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D DM55_2455 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D DM55_2456 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D DM55_2326 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:bmal00525] D DM55_2454 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D DM55_2453 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:bmal00401] D DM55_1231 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1072 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_4765 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4139 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D DM55_4314 FAD binding domain protein K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00405 Phenazine biosynthesis [PATH:bmal00405] D DM55_3356 FAD binding domain protein K20940 phzS; 5-methylphenazine-1-carboxylate 1-monooxygenase [EC:1.14.13.218] D DM55_4114 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D DM55_4113 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D DM55_1919 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DM55_2724 mdcH; malonate decarboxylase, epsilon subunit K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DM55_2177 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4562 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4156 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_2555 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_1920 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_256 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_4432 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:bmal00998] D DM55_918 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D DM55_1921 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D DM55_4014 aepX; phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D DM55_4013 aepY; phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00999 Biosynthesis of various plant secondary metabolites [PATH:bmal00999] D DM55_464 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D DM55_686 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D DM55_3250 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D DM55_3251 hypothetical protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:bmal00997] D DM55_3863 pyoverdine/dityrosine biosynthesis family protein K22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24] D DM55_3864 pvcB; paerucumarin biosynthesis protein PvcB K22874 pvcB; L-tyrosine isonitrile desaturase/decarboxylase [EC:1.14.20.9 1.14.20.10] D DM55_3865 hypothetical protein K25524 pvcC; paerucumarin biosynthesis protein PvcC [EC:1.14.-.-] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:bmal00362] D DM55_3531 benA; benzoate 1,2-dioxygenase, large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D DM55_3532 benB; benzoate 1,2-dioxygenase, small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D DM55_3533 benC; benzoate 1,2-dioxygenase electron transfer component K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D DM55_3534 short chain dehydrogenase family protein K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D DM55_3518 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D DM55_3517 muconate and chloromuconate cycloisomerases family protein K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D DM55_3519 catC; muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D DM55_3649 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D DM55_3652 pcaI; 3-oxoadipate CoA-transferase subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D DM55_3651 pcaJ; 3-oxoadipate CoA-transferase subunit B K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D DM55_1602 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D DM55_4123 pcaF; 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D DM55_3440 tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D DM55_4531 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D DM55_4532 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D DM55_3650 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D DM55_3721 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D DM55_3648 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D DM55_12 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D DM55_4231 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D DM55_3653 pobA; P-hydroxybenzoate hydroxylase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D DM55_75 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_1601 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_796 enoyl-CoA hydratase/isomerase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D DM55_2391 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:bmal00627] D DM55_3608 ethA; FAD-containing monooxygenase EthA K10215 ethA; monooxygenase [EC:1.14.13.-] D DM55_3749 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_4202 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_2574 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_878 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_3835 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D DM55_1741 mdlC; benzoylformate decarboxylase K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7] D DM55_1742 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D DM55_4084 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D DM55_3514 ring hydroxylating alpha subunit family protein K16319 andAc; anthranilate 1,2-dioxygenase large subunit [EC:1.14.12.1] D DM55_3513 ring hydroxylating beta subunit K16320 andAd; anthranilate 1,2-dioxygenase small subunit [EC:1.14.12.1] D DM55_3512 ndoA; naphthalene 1,2-dioxygenase system ferredoxin subunit K18248 andAb; anthranilate 1,2-dioxygenase ferredoxin component D DM55_3511 pyridine nucleotide-disulfide oxidoreductase family protein K18249 andAa; anthranilate 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.-] D DM55_4799 aldehyde dehydrogenase family protein K21802 vdh; vanillin dehydrogenase [EC:1.2.1.67] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:bmal00364] D DM55_3531 benA; benzoate 1,2-dioxygenase, large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D DM55_3532 benB; benzoate 1,2-dioxygenase, small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D DM55_3533 benC; benzoate 1,2-dioxygenase electron transfer component K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D DM55_3534 short chain dehydrogenase family protein K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D DM55_3518 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D DM55_3414 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D DM55_877 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D DM55_3517 muconate and chloromuconate cycloisomerases family protein K01856 catB; muconate cycloisomerase [EC:5.5.1.1] C 00625 Chloroalkane and chloroalkene degradation [PATH:bmal00625] D DM55_3550 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_3579 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D DM55_2178 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_3154 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D DM55_4052 fdhA; formaldehyde dehydrogenase, glutathione-independent K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D DM55_4092 HAD hydrolase, IA, variant 3 family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D DM55_3494 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D DM55_240 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:bmal00361] D DM55_3518 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D DM55_3414 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D DM55_877 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D DM55_3517 muconate and chloromuconate cycloisomerases family protein K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D DM55_4092 HAD hydrolase, IA, variant 3 family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D DM55_3494 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D DM55_240 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation [PATH:bmal00623] D DM55_1742 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D DM55_3518 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D DM55_3517 muconate and chloromuconate cycloisomerases family protein K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D DM55_3414 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D DM55_877 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:bmal00622] D DM55_1742 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D DM55_3531 benA; benzoate 1,2-dioxygenase, large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D DM55_3532 benB; benzoate 1,2-dioxygenase, small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D DM55_3533 benC; benzoate 1,2-dioxygenase electron transfer component K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D DM55_3534 short chain dehydrogenase family protein K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D DM55_3440 tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D DM55_1602 acetyl-CoA C-acetyltransferase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:bmal00643] D DM55_4158 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D DM55_1186 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D DM55_2399 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D DM55_1067 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D DM55_2400 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D DM55_762 fumarylacetoacetate (FAA) hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D DM55_3749 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_4202 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_2574 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D DM55_878 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation [PATH:bmal00791] D DM55_3537 isochorismatase family protein K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D DM55_3901 allophanate hydrolase subunit 1 family protein K01941 uca; urea carboxylase [EC:6.3.4.6] D DM55_2280 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D DM55_2281 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D DM55_2282 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:bmal00930] D DM55_3487 thiJ/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D DM55_2005 fatty acid desaturase family protein K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D DM55_3660 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D DM55_1576 alpha/beta hydrolase fold family protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D DM55_4125 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D DM55_1174 enoyl-CoA hydratase/isomerase family protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation D DM55_4447 hypothetical protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] C 00621 Dioxin degradation D DM55_3440 tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:bmal00626] D DM55_3550 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_3579 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D DM55_1719 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D DM55_4531 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D DM55_4532 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation [PATH:bmal00984] D DM55_3781 FAD dependent oxidoreductase family protein K03333 choD; cholesterol oxidase [EC:1.1.3.6] D DM55_4293 rieske [2Fe-2S] domain protein K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:bmal03020] D DM55_1288 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DM55_1289 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DM55_1323 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DM55_2361 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D DM55_4147 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:bmal03010] D DM55_1832 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D DM55_205 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D DM55_1303 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D DM55_1322 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D DM55_1314 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D DM55_42 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D DM55_1293 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D DM55_1311 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8 D DM55_1442 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9 D DM55_1296 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D DM55_1321 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D DM55_1292 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D DM55_1320 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D DM55_1310 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D DM55_2601 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D DM55_1858 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D DM55_1306 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D DM55_40 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D DM55_1301 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D DM55_1771 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D DM55_911 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DM55_3404 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DM55_1285 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D DM55_1300 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D DM55_1297 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D DM55_1298 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D DM55_1309 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5 D DM55_1312 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D DM55_1287 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D DM55_39 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D DM55_1286 ribosomal L10 family protein K02864 RP-L10; large subunit ribosomal protein L10 D DM55_1284 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D DM55_1443 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DM55_1307 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D DM55_1316 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D DM55_1304 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D DM55_1324 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D DM55_1313 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D DM55_1861 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D DM55_3058 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D DM55_716 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D DM55_1302 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D DM55_1299 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D DM55_1308 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D DM55_1074 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D DM55_715 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D DM55_359 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D DM55_1305 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D DM55_1315 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D DM55_9 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D DM55_1916 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D DM55_360 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D DM55_399 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D DM55_3057 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D DM55_1319 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D DM55_1356 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_2643 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_4126 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_1352 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DM55_4129 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DM55_4130 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DM55_1351 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:bmal00970] D DM55_1106 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_248 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_1354 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_4128 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_2645 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_4143 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_1133 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_1781 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_2363 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_2364 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_1895 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DM55_1896 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DM55_246 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DM55_90 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DM55_4302 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DM55_1944 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DM55_1076 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DM55_247 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DM55_2298 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_1942 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_1943 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_1278 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_129 tRNA-His K14226 tRNA-His; tRNA His D DM55_1355 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DM55_2644 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DM55_4127 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DM55_2023 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_2606 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_4801 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_3116 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_3114 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_133 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_2371 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DM55_1537 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DM55_1676 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_2227 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_2908 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_3400 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_1556 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D DM55_718 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DM55_3064 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DM55_2770 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DM55_3992 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_2341 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_2355 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_294 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_1211 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DM55_1279 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DM55_1797 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DM55_1281 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D DM55_1276 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D DM55_95 tRNA-Val K14237 tRNA-Val; tRNA Val D DM55_2201 tRNA-Val K14237 tRNA-Val; tRNA Val D DM55_3054 tRNA-Val K14237 tRNA-Val; tRNA Val D DM55_249 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DM55_1568 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DM55_1810 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DM55_1569 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D DM55_1567 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D DM55_2108 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D DM55_2111 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DM55_1596 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DM55_1620 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DM55_1619 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DM55_3055 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DM55_2340 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DM55_3256 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D DM55_299 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DM55_2068 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DM55_1549 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DM55_30 formyl transferase family protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D DM55_2144 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DM55_647 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DM55_369 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DM55_4516 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DM55_338 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D DM55_617 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DM55_710 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DM55_3190 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DM55_3059 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DM55_3060 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DM55_1436 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DM55_3489 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DM55_317 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:bmal03060] D DM55_1317 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DM55_1282 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DM55_2605 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DM55_1402 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D DM55_1403 secF; export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D DM55_1401 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DM55_396 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DM55_735 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DM55_826 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DM55_707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DM55_1068 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DM55_1221 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D DM55_1220 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D DM55_1219 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D DM55_1930 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D DM55_370 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:bmal04122] D DM55_346 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_3368 beta-eliminating lyase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_3413 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D DM55_2137 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D DM55_1421 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D DM55_19 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D DM55_260 radical SAM superfamily protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D DM55_1907 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D DM55_20 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D DM55_821 thiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D DM55_1680 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D DM55_1870 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D DM55_1246 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:bmal03018] D DM55_711 NUDIX domain protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D DM55_1908 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D DM55_327 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DM55_2602 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D DM55_1648 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D DM55_2523 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D DM55_3113 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DM55_1291 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D DM55_5 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D DM55_1457 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DM55_2442 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DM55_3128 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_3186 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_2760 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D DM55_1463 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:bmal03030] D DM55_2735 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DM55_2526 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DM55_3 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DM55_62 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DM55_645 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DM55_2035 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DM55_401 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DM55_38 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D DM55_3402 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D DM55_1102 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM55_2736 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D DM55_191 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D DM55_3417 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DM55_210 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:bmal03410] D DM55_2511 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D DM55_4109 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D DM55_1081 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D DM55_1080 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D DM55_1521 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D DM55_298 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D DM55_910 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D DM55_228 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D DM55_2218 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DM55_1571 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DM55_3417 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DM55_336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DM55_210 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:bmal03420] D DM55_144 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D DM55_1100 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DM55_3635 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DM55_4138 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D DM55_1940 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D DM55_2145 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DM55_3417 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DM55_210 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DM55_4147 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:bmal03430] D DM55_308 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D DM55_1469 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D DM55_2145 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DM55_389 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DM55_3410 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DM55_336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DM55_1102 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM55_2526 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DM55_401 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DM55_3 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DM55_645 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DM55_62 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DM55_2735 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DM55_2035 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DM55_210 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:bmal03440] D DM55_336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DM55_1102 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM55_1933 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D DM55_1 recR; recombination protein RecR K06187 recR; recombination protein RecR D DM55_1672 recA; protein RecA K03553 recA; recombination protein RecA D DM55_3417 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DM55_1430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D DM55_1431 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D DM55_1429 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D DM55_1398 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D DM55_2660 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D DM55_2659 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D DM55_2661 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D DM55_2526 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DM55_401 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DM55_3 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DM55_645 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DM55_62 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DM55_2735 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DM55_2035 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DM55_997 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D DM55_41 putative primosomal replication protein n K02686 priB; primosomal replication protein N C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:bmal03250] D DM55_301 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:bmal02010] D DM55_115 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D DM55_114 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DM55_113 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DM55_112 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D DM55_4907 substrate binding domain of ABC-type glycine betaine transport system family protein K15551 tauA; taurine transport system substrate-binding protein D DM55_4905 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D DM55_4906 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D DM55_4219 ABC transporter, substrate-binding , aliphatic sulfonates family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_1201 bacterial extracellular solute-binding s, 3 family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_2928 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_2915 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_2931 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_1199 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_2916 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_2930 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_1200 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_3435 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D DM55_2412 bacterial extracellular solute-binding family protein K02020 modA; molybdate transport system substrate-binding protein D DM55_3436 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D DM55_3437 ABC transporter family protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D DM55_4420 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DM55_2655 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DM55_4419 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DM55_2654 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DM55_4418 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DM55_2653 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DM55_3149 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein D DM55_3146 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D DM55_3147 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein D DM55_3148 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D DM55_4063 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DM55_4068 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DM55_4073 choX; choline ABC transporter, periplasmic binding family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DM55_3020 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D DM55_3016 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D DM55_3019 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D DM55_3018 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D DM55_1732 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_4584 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_2332 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_1728 bacterial extracellular solute-binding family protein K10227 smoE; polyol transport system substrate-binding protein D DM55_1729 binding--dependent transport system inner membrane component family protein K10228 smoF; polyol transport system permease protein D DM55_1730 binding--dependent transport system inner membrane component family protein K10229 smoG; polyol transport system permease protein D DM55_3737 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein D DM55_1239 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein D DM55_776 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D DM55_1241 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D DM55_774 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D DM55_1242 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D DM55_1238 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein D DM55_775 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D DM55_1243 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D DM55_2329 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D DM55_2330 binding--dependent transport system inner membrane component family protein K17316 gtsB; glucose/mannose transport system permease protein D DM55_2331 binding--dependent transport system inner membrane component family protein K17317 gtsC; glucose/mannose transport system permease protein D DM55_2962 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DM55_4338 ABC sugar (Ribose) transporter, periplasmic substrate-binding subunit K10439 rbsB; ribose transport system substrate-binding protein D DM55_4790 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DM55_2964 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DM55_4335 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DM55_4336 putative membrane protein K10440 rbsC; ribose transport system permease protein D DM55_4337 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DM55_2963 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DM55_678 periplasmic binding s and sugar binding domain of LacI family protein K10537 araF; L-arabinose transport system substrate-binding protein D DM55_676 branched-chain amino acid transport system / permease component family protein K10538 araH; L-arabinose transport system permease protein D DM55_677 ABC transporter family protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D DM55_3970 periplasmic binding s and sugar binding domain of LacI family protein K17205 xltC; putative xylitol transport system substrate-binding protein D DM55_3969 branched-chain amino acid transport system / permease component family protein K17206 xltB; putative xylitol transport system permease protein D DM55_3968 ABC transporter family protein K17207 xltA; putative xylitol transport system ATP-binding protein D DM55_1259 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D DM55_1258 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D DM55_1257 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D DM55_1256 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D DM55_2753 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D DM55_2754 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D DM55_2755 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D DM55_2756 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DM55_1377 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D DM55_1380 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D DM55_1005 bacterial extracellular solute-binding s, 3 family protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D DM55_1972 lysine-arginine-ornithine-binding periplasmic family protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D DM55_2186 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D DM55_4277 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D DM55_1962 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D DM55_2187 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D DM55_4276 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D DM55_2185 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D DM55_4278 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D DM55_1963 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D DM55_2188 lysine-arginine-ornithine-binding periplasmic family protein K10014 hisJ; histidine transport system substrate-binding protein D DM55_3716 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D DM55_3717 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D DM55_3718 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D DM55_633 gltI; glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D DM55_631 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D DM55_632 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D DM55_630 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D DM55_2903 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_2325 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_2902 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D DM55_2324 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D DM55_2323 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D DM55_1000 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_941 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_971 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_975 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_1187 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_2600 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_1959 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_4771 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_3005 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_2124 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_972 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_976 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_2470 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_1188 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_2125 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_977 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2471 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_973 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_1189 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_969 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2472 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_1190 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2473 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_970 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_978 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_1191 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_2126 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_1847 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DM55_846 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DM55_1846 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D DM55_1845 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D DM55_2288 periplasmic binding domain protein K11959 urtA; urea transport system substrate-binding protein D DM55_2287 urtB; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D DM55_2286 urtC; urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D DM55_2285 urtD; urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D DM55_2284 urtE; urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein D DM55_3390 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DM55_3389 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DM55_3388 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DM55_3387 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D DM55_3386 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D DM55_503 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DM55_610 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DM55_504 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D DM55_505 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D DM55_507 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein D DM55_508 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein D DM55_4526 bacterial extracellular solute-binding s, 5 Middle family protein K13889 gsiB; glutathione transport system substrate-binding protein D DM55_4527 binding--dependent transport system inner membrane component family protein K13890 gsiC; glutathione transport system permease protein D DM55_4528 gsiD; glutathione transport system permease protein gsiD K13891 gsiD; glutathione transport system permease protein D DM55_4525 nikE; nickel import ATP-binding protein NikE K13892 gsiA; glutathione transport system ATP-binding protein D DM55_255 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D DM55_254 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein D DM55_253 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein D DM55_252 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D DM55_2975 periplasmic binding family protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D DM55_2973 fecCD transport family protein K23228 fhuB; ferric hydroxamate transport system permease protein D DM55_2972 putative siderophore transport system ATP-binding protein YusV K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D DM55_1477 chain length determinant family protein K10107 kpsE; capsular polysaccharide transport system permease protein D DM55_1478 ABC-2 type transporter family protein K09688 kpsM; capsular polysaccharide transport system permease protein D DM55_1480 ABC transporter family protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D DM55_2457 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D DM55_2458 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D DM55_121 ABC-2 type transporter, NodJ family protein K09694 nodJ; lipooligosaccharide transport system permease protein D DM55_120 nodI; nodulation ABC transporter NodI K09695 nodI; lipooligosaccharide transport system ATP-binding protein D DM55_334 liporeleasing system, transmembrane , LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein D DM55_333 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D DM55_2033 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D DM55_2032 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D DM55_1089 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D DM55_2865 ABC-2 transporter family protein K19341 nosY; Cu-processing system permease protein D DM55_2866 ABC transporter family protein K19340 nosF; Cu-processing system ATP-binding protein D DM55_2527 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D DM55_861 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D DM55_1607 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D DM55_2977 cyclic peptide transporter family protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D DM55_1248 ABC transporter family protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:bmal02060] D DM55_820 ptsP; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D DM55_819 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr D DM55_1024 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D DM55_818 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DM55_1025 ptsP; phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D DM55_1085 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:bmal03070] D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_4879 eprI; type III secretion apparatus needle protein K03221 yscF; type III secretion protein F D DM55_4929 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D DM55_3217 secretory of YscJ/FliF family protein K03222 yscJ; type III secretion protein J D DM55_3211 epaP; type III secretion apparatus protein, YscR/HrcR family K03226 yscR; type III secretion protein R D DM55_3210 type III secretion , HrpO family protein K03227 yscS; type III secretion protein S D DM55_3222 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T D DM55_3214 type III secretion , YscU/HrpY family protein K03229 yscU; type III secretion protein U D DM55_3213 type III secretion , HrcV family protein K03230 yscV; type III secretion protein V D DM55_4874 invA; invasion protein invA K03230 yscV; type III secretion protein V D DM55_3220 type III secretion apparatus H+-transporting two-sector ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D DM55_3212 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q D DM55_4869 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q D DM55_3219 type III secretion apparatus protein, HrpE/YscL family K03223 yscL; type III secretion protein L D DM55_1142 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D DM55_1145 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C D DM55_1144 gspF; type II secretion system protein F K02455 gspF; general secretion pathway protein F D DM55_1146 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D DM55_1147 gspH; type II secretion system protein H K02457 gspH; general secretion pathway protein H D DM55_1148 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I D DM55_1149 putative general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D DM55_1150 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D DM55_1151 gspL; type II secretion system protein L K02461 gspL; general secretion pathway protein L D DM55_1152 type II secretion system (T2SS), M family protein K02462 gspM; general secretion pathway protein M D DM55_1143 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D DM55_4934 type II/IV secretion system family protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D DM55_1402 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D DM55_1403 secF; export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D DM55_1282 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DM55_2605 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DM55_1317 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DM55_1401 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DM55_396 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DM55_735 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DM55_1068 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DM55_826 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DM55_707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DM55_1221 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D DM55_1220 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D DM55_1219 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D DM55_3886 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4705 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_3338 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4028 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4029 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4251 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_3875 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D DM55_4700 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D DM55_4023 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D DM55_3874 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D DM55_3352 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D DM55_4034 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D DM55_3871 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_4713 hypothetical protein K11891 impL; type VI secretion system protein ImpL D DM55_3349 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_865 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_4038 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_3872 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK D DM55_4712 type IV/VI secretion system , DotU family domain protein K11892 impK; type VI secretion system protein ImpK D DM55_3350 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK D DM55_4037 type IV/VI secretion system , DotU family domain protein K11892 impK; type VI secretion system protein ImpK D DM55_3878 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_4704 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_3339 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_869 AAA domain family protein K11907 vasG; type VI secretion system protein VasG D DM55_4027 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:bmal02020] D DM55_2759 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DM55_4941 hypothetical protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D DM55_2758 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D DM55_594 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_595 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_2753 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D DM55_2193 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DM55_139 putative oxidative stress related two component system, sensor kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DM55_2192 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D DM55_138 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D DM55_1927 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_1703 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_4631 heavy metal sensor kinase family protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D DM55_4630 response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D DM55_571 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D DM55_572 heavy metal efflux pump, CzcA family protein K07787 cusA; copper/silver efflux system protein D DM55_904 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D DM55_903 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D DM55_912 hypothetical protein K02406 fliC; flagellin D DM55_882 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA D DM55_902 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DM55_2564 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D DM55_2565 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D DM55_2560 kdpA; K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D DM55_2561 kdpB; K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D DM55_2562 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D DM55_4422 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D DM55_1198 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D DM55_1197 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D DM55_4421 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D DM55_841 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DM55_4050 lsdA; levansucrase K00692 sacB; levansucrase [EC:2.4.1.10] D DM55_400 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DM55_2949 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D DM55_2950 acrB/AcrD/AcrF family protein K18095 mexY; multidrug efflux pump D DM55_4247 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D DM55_3840 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D DM55_3327 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D DM55_2220 GAF domain protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D DM55_3741 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D DM55_2219 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D DM55_2224 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D DM55_2223 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D DM55_2221 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D DM55_2222 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D DM55_4465 response regulator K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D DM55_2096 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D DM55_2897 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D DM55_493 bacterial regulatory s, luxR family protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D DM55_1973 fatty acid desaturase family protein K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45] D DM55_2094 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2091 fimbrial family protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2079 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2168 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2089 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2090 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2888 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2951 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2078 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2092 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2077 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2093 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2889 hypothetical protein K07347 fimD; outer membrane usher protein D DM55_3142 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D DM55_2932 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D DM55_3139 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D DM55_2934 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D DM55_3138 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D DM55_2935 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D DM55_3137 response regulator K02282 cpaE; pilus assembly protein CpaE D DM55_2937 cobQ/CobB/MinD/ParA nucleotide binding domain protein K02282 cpaE; pilus assembly protein CpaE D DM55_3136 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D DM55_2938 ABC transporter family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D DM55_2939 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D DM55_3135 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D DM55_2940 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D DM55_3134 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D DM55_3133 tetratricopeptide repeat family protein K27079 tadD; tight adherence protein D D DM55_3131 tad-like Flp pilus-assembly family protein K27080 tadG; tight adherence protein G D DM55_3415 tad-like Flp pilus-assembly family protein K27080 tadG; tight adherence protein G D DM55_207 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D DM55_2183 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D DM55_2215 sensory box protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D DM55_2216 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D DM55_2214 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2019 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_1554 HAMP domain protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D DM55_1555 bacterial regulatory , Fis family protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3629 putative c4-dicarboxylate transport sensor kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D DM55_3628 his Kinase A domain protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D DM55_805 AAA domain family protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D DM55_3627 bacterial regulatory , Fis family protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D DM55_802 dicarboxylate symporter family protein K11103 dctA; aerobic C4-dicarboxylate transport protein D DM55_656 dicarboxylate symporter family protein K11103 dctA; aerobic C4-dicarboxylate transport protein D DM55_1087 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D DM55_1666 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D DM55_894 cheR methyltransferase, all-alpha domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D DM55_4441 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_845 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_932 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3561 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3576 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_2148 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3025 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_586 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_895 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_4224 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_3923 tsr; methyl-accepting chemotaxis protein I K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_1659 sensory box protein K03776 aer; aerotaxis receptor D DM55_3026 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D DM55_896 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D DM55_892 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_899 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_893 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D DM55_3498 tetratricopeptide repeat family protein K13486 wspC; chemotaxis protein methyltransferase WspC D DM55_3500 hypothetical protein K13487 wspA; methyl-accepting chemotaxis protein WspA D DM55_3499 cheW-like domain protein K13488 wspB; chemotaxis-related protein WspB D DM55_3497 cheW-like domain protein K13489 wspD; chemotaxis-related protein WspD D DM55_3496 cheW-like domain protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D DM55_3495 cheB methylesterase family protein K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D DM55_630 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D DM55_631 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D DM55_632 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D DM55_633 gltI; glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D DM55_1514 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DM55_4348 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D DM55_453 his Kinase A domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D DM55_454 bacterial regulatory , Fis family protein K15012 regA; two-component system, response regulator RegA D DM55_1216 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D DM55_1215 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D DM55_1214 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D DM55_2037 cyt; cytochrome c-552 K08738 CYC; cytochrome c D DM55_1107 ph_c-552; cytochrome c K08738 CYC; cytochrome c D DM55_1019 cydA; cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DM55_3947 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D DM55_1020 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DM55_3946 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D DM55_2853 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D DM55_1022 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_437 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DM55_1476 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DM55_348 low molecular weight phosphotyrosine phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D DM55_3617 cobQ/CobB/MinD/ParA nucleotide binding domain protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D DM55_4175 autoinducer synthetase family protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D DM55_4177 sigma-70, region 4 family protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR D DM55_4332 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D DM55_4333 fecR family protein K07165 fecR; transmembrane sensor D DM55_523 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D DM55_1216 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:bmal02024] D DM55_3128 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_3186 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_4114 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D DM55_4113 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D DM55_4175 autoinducer synthetase family protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184] D DM55_4042 alpha/beta hydrolase family protein K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D DM55_4474 alpha/beta hydrolase family protein K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D DM55_4043 hypothetical protein K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D DM55_4475 hypothetical protein K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D DM55_4478 rhamnosyltransferase family protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D DM55_4046 rhamnosyltransferase family protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D DM55_1445 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DM55_4540 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D DM55_904 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D DM55_903 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D DM55_2565 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D DM55_2684 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DM55_3962 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DM55_1527 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DM55_2681 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_2683 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_3960 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_3963 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_2680 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DM55_3961 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DM55_1000 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_941 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_971 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_975 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_1187 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_2600 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_1959 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_4771 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_3005 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_2124 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_972 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_976 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_2470 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_1188 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_2125 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_977 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2471 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_973 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_1189 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_969 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2472 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_1190 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2473 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_970 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_978 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_1191 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_2126 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_4177 sigma-70, region 4 family protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR D DM55_4903 autoinducer synthetase family protein K20250 cciI; acyl homoserine lactone synthase [EC:2.3.1.184] D DM55_4902 bacterial regulatory s, luxR family protein K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR D DM55_4888 thermolysin metallopeptidase, catalytic domain protein K20273 zmpA; zinc metalloprotease ZmpA D DM55_4071 peptidase propeptide and YPEB domain protein K20274 zmpB; zinc metalloprotease ZmpB D DM55_4795 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_1764 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_3125 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_1514 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DM55_1724 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D DM55_2646 iclR helix-turn-helix domain protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis D DM55_4611 GTP cyclohydrolase II family protein K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D DM55_4174 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D DM55_4610 WD domain, G-beta repeat family protein K20332 toxC; toxoflavin biosynthesis protein ToxC D DM55_2316 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D DM55_4614 efflux transporter, RND family, MFP subunit K18306 mexH; membrane fusion protein, multidrug efflux system D DM55_4613 acrB/AcrD/AcrF family protein K18307 mexI; multidrug efflux pump D DM55_3570 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_4612 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_1710 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_3390 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DM55_3389 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DM55_3388 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DM55_3387 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D DM55_3386 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D DM55_4246 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DM55_4257 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DM55_4245 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DM55_4244 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DM55_4243 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DM55_4242 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DM55_396 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DM55_4268 subtilase family protein K14645 K14645; serine protease [EC:3.4.21.-] D DM55_1282 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DM55_2605 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DM55_1317 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DM55_1401 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DM55_735 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DM55_1068 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DM55_826 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DM55_707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DM55_4813 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3118 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_4519 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3622 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:bmal02030] D DM55_4441 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_845 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_932 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3561 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3576 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_2148 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3025 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_586 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_895 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_4224 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_3923 tsr; methyl-accepting chemotaxis protein I K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_1659 sensory box protein K03776 aer; aerotaxis receptor D DM55_2962 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DM55_4338 ABC sugar (Ribose) transporter, periplasmic substrate-binding subunit K10439 rbsB; ribose transport system substrate-binding protein D DM55_4790 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DM55_503 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DM55_610 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DM55_3026 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D DM55_896 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D DM55_892 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_899 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_3710 cheC-like family protein K03410 cheC; chemotaxis protein CheC D DM55_891 cheZ; protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D DM55_893 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D DM55_894 cheR methyltransferase, all-alpha domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D DM55_483 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D DM55_1163 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D DM55_1164 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DM55_902 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DM55_900 motB; motility protein B K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:bmal02040] D DM55_485 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D DM55_484 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D DM55_483 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D DM55_482 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D DM55_481 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D DM55_480 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D DM55_479 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D DM55_1162 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D DM55_1163 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D DM55_1164 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DM55_1165 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D DM55_1207 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D DM55_1206 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D DM55_1205 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D DM55_885 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D DM55_887 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D DM55_524 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D DM55_526 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D DM55_527 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D DM55_528 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D DM55_529 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE D DM55_530 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D DM55_531 flgF; flagellar basal-body rod protein FlgF K02392 flgG; flagellar basal-body rod protein FlgG D DM55_532 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D DM55_533 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D DM55_534 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D DM55_536 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D DM55_537 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D DM55_912 hypothetical protein K02406 fliC; flagellin D DM55_913 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D DM55_4151 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D DM55_486 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D DM55_487 flagellar FliT family protein K02423 fliT; flagellar protein FliT D DM55_914 flagellar FliT family protein K02423 fliT; flagellar protein FliT D DM55_902 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DM55_900 motB; motility protein B K02557 motB; chemotaxis protein MotB D DM55_523 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D DM55_522 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D DM55_2903 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_2325 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_1523 RNA polymerase sigma factor, sigma-70 family protein K03086 rpoD; RNA polymerase primary sigma factor D DM55_3401 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D DM55_904 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D DM55_903 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D DM55_1087 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D DM55_882 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D DM55_327 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:bmal04980] D DM55_1370 cob(I)alamin adenosyltransferase, putative K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D DM55_757 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D DM55_758 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:bmal01501] D DM55_4069 gram-negative porin family protein K08720 ompU; outer membrane protein OmpU D DM55_446 major Facilitator Superfamily protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D DM55_2105 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DM55_1936 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D DM55_3390 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DM55_3389 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DM55_3388 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DM55_3387 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D DM55_3386 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D DM55_4239 bla; beta-lactamase Toho-1 K17836 penP; beta-lactamase class A [EC:3.5.2.6] D DM55_2948 putative transcriptional regulator domain protein K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D DM55_2949 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D DM55_2950 acrB/AcrD/AcrF family protein K18095 mexY; multidrug efflux pump D DM55_1708 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DM55_1709 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D DM55_3570 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_4612 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_1710 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_149 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_1267 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3950 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3753 penicillin binding transpeptidase domain protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_1563 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D DM55_4602 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_4580 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_750 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:bmal01502] D DM55_4247 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D DM55_742 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DM55_224 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DM55_748 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D DM55_747 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DM55_744 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bmal01503] D DM55_29 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D DM55_32 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D DM55_1759 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DM55_1927 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_1703 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_615 dsbA; disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D DM55_301 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D DM55_1708 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DM55_1709 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_193 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:bmal01000] C 01001 Protein kinases [BR:bmal01001] D DM55_4920 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D DM55_3617 cobQ/CobB/MinD/ParA nucleotide binding domain protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D DM55_2759 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DM55_2193 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DM55_139 putative oxidative stress related two component system, sensor kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DM55_4631 heavy metal sensor kinase family protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D DM55_2564 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D DM55_4422 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D DM55_1198 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D DM55_4403 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_4654 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_4351 his Kinase A domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_1702 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_2220 GAF domain protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D DM55_4465 response regulator K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D DM55_3742 histidine kinase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D DM55_2215 sensory box protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D DM55_1554 HAMP domain protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D DM55_3629 putative c4-dicarboxylate transport sensor kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D DM55_3628 his Kinase A domain protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D DM55_3239 his Kinase A domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D DM55_4759 PAS fold family protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D DM55_3496 cheW-like domain protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D DM55_453 his Kinase A domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:bmal01009] D DM55_881 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D DM55_2495 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D DM55_3161 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:bmal01002] D DM55_370 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D DM55_729 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D DM55_3141 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D DM55_2933 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D DM55_172 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DM55_956 peptidase C26 family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D DM55_2018 peptidase C26 family protein K07010 K07010; putative glutamine amidotransferase D DM55_861 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D DM55_3291 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D DM55_1252 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D DM55_2699 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_575 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_1026 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D DM55_3866 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D DM55_4393 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D DM55_1634 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D DM55_1579 intracellular protease, PfpI family protein K05520 yhbO; deglycase [EC:3.5.1.124] D DM55_3487 thiJ/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D DM55_185 hypothetical protein K25587 E3.4.17.25; glutathione-S-conjugate glycine hydrolase [EC:3.4.17.25] D DM55_3492 CAAX protease self-immunity family protein K07052 K07052; CAAX protease family protein D DM55_4322 CAAX protease self-immunity family protein K07052 K07052; CAAX protease family protein D DM55_1802 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DM55_857 peptidase M1 family protein K01256 pepN; aminopeptidase N [EC:3.4.11.2] D DM55_2229 peptidase M3 family protein K01414 prlC; oligopeptidase A [EC:3.4.24.70] D DM55_4888 thermolysin metallopeptidase, catalytic domain protein K20273 zmpA; zinc metalloprotease ZmpA D DM55_4071 peptidase propeptide and YPEB domain protein K20274 zmpB; zinc metalloprotease ZmpB D DM55_4743 collagenase family protein K01387 colA; microbial collagenase [EC:3.4.24.3] D DM55_4247 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D DM55_864 D-alanyl-D-alanine carboxypeptidase family protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D DM55_2034 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D DM55_4055 membrane dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D DM55_217 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D DM55_3850 amidohydrolase family protein K01451 hipO; hippurate hydrolase [EC:3.5.1.32] D DM55_263 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D DM55_206 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D DM55_1424 hypothetical protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D DM55_4090 metallopeptidase M24 family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D DM55_4070 peptidase M20/M25/M40 family protein K05994 E3.4.11.10; bacterial leucyl aminopeptidase [EC:3.4.11.10] D DM55_4618 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DM55_2750 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DM55_1868 peptidase M48 family protein K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D DM55_1551 peptidase M48 family protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D DM55_1681 peptidase M48 family protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D DM55_198 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D DM55_4530 D-aminopeptidase family protein K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D DM55_8 glucose-regulated metallo-peptidase M90 family protein K09933 mtfA; MtfA peptidase D DM55_4831 peptidase S58 family protein K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D DM55_4529 peptidase S58 family protein K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D DM55_1927 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_1703 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_1218 peptidase Do family protein K04772 degQ; serine protease DegQ [EC:3.4.21.-] D DM55_4268 subtilase family protein K14645 K14645; serine protease [EC:3.4.21.-] D DM55_4481 hypothetical protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D DM55_781 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DM55_4581 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DM55_2239 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D DM55_1700 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D DM55_98 clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D DM55_4379 hydrolase CocE/NonD family protein K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11] D DM55_499 AAA domain family protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D DM55_96 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D DM55_116 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DM55_1930 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D DM55_3908 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D DM55_1844 lipase family protein K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D DM55_822 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D DM55_3104 penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D DM55_3907 penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D DM55_1912 clp protease family protein K04773 sppA; protease IV [EC:3.4.21.-] D DM55_186 pcp; pseudomonalisin K05998 E3.4.21.100; pseudomonalisin [EC:3.4.21.100] D DM55_3612 pcp; pseudomonalisin K05999 E3.4.21.101; xanthomonalisin [EC:3.4.21.101] D DM55_4895 scpA; kumamolisin K08677 kscP; kumamolisin [EC:3.4.21.123] D DM55_165 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D DM55_456 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D DM55_4524 iaaA; isoaspartyl peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D DM55_794 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_1645 gamma-glutamyltranspeptidase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D DM55_1995 peptidase U32 family protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D DM55_1994 hypothetical protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D DM55_1872 modulator of DNA gyrase family protein K03592 pmbA; PmbA protein D DM55_1446 modulator of DNA gyrase family protein K03568 tldD; TldD protein D DM55_4756 MG2 domain protein K06894 yfhM; alpha-2-macroglobulin D DM55_3183 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D DM55_3184 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:bmal01003] D DM55_549 glycosyl transferase 2 family protein K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D DM55_2583 glycosyl transferases group 1 family protein K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] D DM55_4911 bcsA; cellulose synthase catalytic subunit UDP-forming K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D DM55_685 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D DM55_4757 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D DM55_149 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_1267 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3950 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3753 penicillin binding transpeptidase domain protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_4042 alpha/beta hydrolase family protein K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D DM55_4474 alpha/beta hydrolase family protein K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-] D DM55_4043 hypothetical protein K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D DM55_4475 hypothetical protein K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D DM55_4050 lsdA; levansucrase K00692 sacB; levansucrase [EC:2.4.1.10] D DM55_1953 otsA; alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] C 01005 Lipopolysaccharide biosynthesis proteins [BR:bmal01005] D DM55_193 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D DM55_192 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D DM55_1496 UDP-3-O-acyl N-acetylglycosamine deacetylase family protein K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D DM55_737 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D DM55_195 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D DM55_303 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D DM55_388 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D DM55_463 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D DM55_2276 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D DM55_1059 lipid A 3-O-deacylase family protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D DM55_328 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D DM55_386 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D DM55_1092 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D DM55_1093 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D DM55_1838 rfaE; bifunctional protein RfaE K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D DM55_768 rfaE; bifunctional protein RfaE K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D DM55_2274 rfaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D DM55_2350 rfaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D DM55_1685 rfaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D DM55_2532 glycosyltransferase 9 family protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D DM55_1109 SIS domain protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D DM55_1489 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D DM55_3804 HAD-hyrolase-like family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D DM55_1491 gmhB; D,D-heptose 1,7-bisphosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D DM55_1618 HAD hydrolase, family IIIA domain protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D DM55_1839 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D DM55_4478 rhamnosyltransferase family protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D DM55_4046 rhamnosyltransferase family protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bmal01011] D DM55_1234 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DM55_4279 EPSP synthase family protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D DM55_1768 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D DM55_743 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D DM55_746 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D DM55_749 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D DM55_742 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D DM55_224 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D DM55_3983 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D DM55_165 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D DM55_747 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D DM55_744 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D DM55_2296 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D DM55_3680 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D DM55_1772 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D DM55_149 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_1267 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3950 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_3753 penicillin binding transpeptidase domain protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D DM55_4757 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D DM55_1563 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D DM55_4602 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_4580 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_750 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_781 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DM55_4581 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D DM55_1700 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D DM55_2239 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D DM55_685 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D DM55_4247 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D DM55_864 D-alanyl-D-alanine carboxypeptidase family protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D DM55_517 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D DM55_4119 mltA specific insert domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D DM55_1842 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D DM55_2739 lysM domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D DM55_64 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D DM55_949 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D DM55_1759 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DM55_3111 amiD; N-acetylmuramoyl-L-alanine amidase AmiD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DM55_704 N-acetylmuramoyl-L-alanine amidase family protein K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:bmal01004] D DM55_1919 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DM55_2724 mdcH; malonate decarboxylase, epsilon subunit K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D DM55_917 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DM55_919 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DM55_1918 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D DM55_4306 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DM55_1922 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D DM55_2177 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4562 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_4156 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_2555 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_1920 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D DM55_194 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D DM55_256 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_4432 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D DM55_2100 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D DM55_88 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D DM55_1606 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D DM55_364 fatty acid desaturase family protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D DM55_1973 fatty acid desaturase family protein K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45] D DM55_3989 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_2777 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D DM55_4795 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_1764 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_3125 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_3023 AMP-binding enzyme family protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D DM55_993 AMP-binding enzyme family protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D DM55_1917 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D DM55_1766 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D DM55_1617 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D DM55_2451 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:bmal01008] D DM55_4550 mbtH; protein mbtH K05375 mbtH; MbtH protein D DM55_3031 mbtH-like family protein K05375 mbtH; MbtH protein D DM55_2970 mbtH-like family protein K05375 mbtH; MbtH protein D DM55_4314 FAD binding domain protein K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D DM55_4295 pksF; polyketide biosynthesis malonyl-ACP decarboxylase PksF K00646 pksF; malonyl-[acp] decarboxylase [EC:4.1.1.124] D DM55_4296 acpK; polyketide biosynthesis acyl-carrier-protein AcpK K15337 acpK; polyketide biosynthesis acyl carrier protein D DM55_4301 pksG; polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase pksG K15311 pksG; 3-carboxymethyl-3-hydroxy-acyl-[acp] synthase [EC:2.3.3.22] D DM55_4298 putative polyketide biosynthesis enoyl-CoA hydratase pksH K15312 pksH; 3-carboxymethyl-3-hydroxy-acyl-[acp] dehydratase [EC:4.2.1.181] D DM55_4297 putative polyketide biosynthesis enoyl-CoA isomerase pksI K15313 pksI; 4-carboxy-3-alkylbut-2-enoyl-[acp] decarboxylase [EC:4.1.1.125] D DM55_4745 cys/Met metabolism PLP-dependent enzyme family protein K04127 cefD; isopenicillin-N epimerase [EC:5.1.1.17] C 01006 Prenyltransferases [BR:bmal01006] D DM55_3409 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D DM55_717 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D DM55_201 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D DM55_3941 squalene/phytoene synthase family protein K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] D DM55_134 hpnD; squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D DM55_1468 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D DM55_1391 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D DM55_842 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:bmal01007] D DM55_249 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DM55_2108 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D DM55_2524 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D DM55_1436 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DM55_3489 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DM55_317 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DM55_299 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DM55_617 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DM55_2068 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DM55_369 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DM55_4516 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DM55_2144 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DM55_647 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DM55_338 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D DM55_1596 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DM55_3190 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DM55_1620 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DM55_1619 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DM55_2340 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DM55_710 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DM55_3055 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DM55_2111 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DM55_3059 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DM55_3060 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DM55_24 aminotransferase class-V family protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D DM55_4765 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_4139 aminotransferase class I and II family protein K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D DM55_1004 cys/Met metabolism PLP-dependent enzyme family protein K14287 ybdL; methionine transaminase [EC:2.6.1.88] D DM55_2635 beta-eliminating lyase family protein K14287 ybdL; methionine transaminase [EC:2.6.1.88] D DM55_214 dapC; succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D DM55_1231 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_1072 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D DM55_3694 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D DM55_600 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D DM55_1497 cys/Met metabolism PLP-dependent enzyme family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D DM55_2289 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_4450 aminotransferase class-III family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D DM55_2476 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DM55_2020 aminotransferase class-III family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D DM55_1965 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D DM55_3229 2,4-diaminobutyrate 4-transaminase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D DM55_1047 2,4-diaminobutyrate 4-transaminase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D DM55_601 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D DM55_3827 aminotransferase class-III family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D DM55_2317 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D DM55_782 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21] D DM55_1687 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D DM55_1459 pabB; aminodeoxychorismate synthase, component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D DM55_4012 2-aminoethylphosphonate aminotransferase family protein K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D DM55_1828 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D DM55_270 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:bmal00194] D DM55_992 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DM55_3587 ATP synthase, Delta/Epsilon chain, beta-sandwich domain protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D DM55_991 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DM55_3588 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D DM55_990 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DM55_3580 ATP synthase family protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D DM55_989 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DM55_3581 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D DM55_988 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D DM55_987 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DM55_3582 ATP synthase delta (OSCP) subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D DM55_986 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DM55_3583 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D DM55_985 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DM55_3584 ATP synthase A chain family protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DM55_984 ATP synthase I chain family protein K02116 atpI; ATP synthase protein I D DM55_3586 F0F1-ATPase subunit family protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:bmal03000] D DM55_1118 helix-turn-helix domain protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D DM55_2407 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D DM55_1520 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DM55_4372 helix-turn-helix domain protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D DM55_4072 helix-turn-helix domain protein K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D DM55_1964 argR; transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D DM55_4053 helix-turn-helix domain protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D DM55_784 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DM55_539 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DM55_4240 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DM55_3360 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DM55_3371 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DM55_3959 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DM55_4533 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D DM55_1800 bacterial regulatory helix-turn-helix , lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D DM55_1397 bacterial regulatory helix-turn-helix , lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D DM55_3948 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D DM55_3668 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D DM55_658 cynR; HTH-type transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D DM55_2024 bacterial regulatory helix-turn-helix , lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D DM55_111 bacterial regulatory helix-turn-helix , lysR family protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D DM55_3851 bacterial regulatory helix-turn-helix , lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D DM55_3687 dmlR; HTH-type transcriptional regulator DmlR K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D DM55_2702 bacterial regulatory helix-turn-helix , lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D DM55_635 bacterial regulatory helix-turn-helix , lysR family protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D DM55_4449 bacterial regulatory helix-turn-helix , lysR family protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D DM55_3516 bacterial regulatory helix-turn-helix , lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D DM55_3529 benM; HTH-type transcriptional regulator BenM K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D DM55_4669 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D DM55_1644 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D DM55_4051 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DM55_2839 periplasmic binding s and sugar binding domain of LacI family protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D DM55_1388 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D DM55_2012 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D DM55_1506 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DM55_1028 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DM55_3325 gntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D DM55_4502 UTRA domain protein K03710 K03710; GntR family transcriptional regulator D DM55_657 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DM55_2696 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D DM55_2787 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D DM55_4007 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D DM55_4436 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D DM55_4471 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D DM55_1707 ttgR; HTH-type transcriptional regulator ttgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D DM55_449 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator D DM55_262 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DM55_4428 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DM55_2948 putative transcriptional regulator domain protein K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D DM55_1749 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_946 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_964 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_2697 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_1853 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_1366 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_4897 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_3311 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_4203 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_4767 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_2652 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D DM55_4177 sigma-70, region 4 family protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR D DM55_4902 bacterial regulatory s, luxR family protein K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR D DM55_3768 bacterial regulatory s, luxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D DM55_3430 ohrR; transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D DM55_6 merR regulatory family protein K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon D DM55_652 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D DM55_1724 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D DM55_2646 iclR helix-turn-helix domain protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis D DM55_1514 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DM55_3549 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D DM55_3667 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D DM55_1992 cyclic nucleotide-binding domain protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D DM55_347 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D DM55_1980 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D DM55_17 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D DM55_1181 transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator D DM55_642 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D DM55_771 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D DM55_1427 bacterial regulatory , Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D DM55_3912 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D DM55_4919 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D DM55_3438 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein D DM55_999 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D DM55_2860 4Fe-4S binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D DM55_80 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D DM55_982 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DM55_3702 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DM55_1452 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D DM55_1178 paaX-like family protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D DM55_4170 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D DM55_2448 phosphoribosyl transferase domain protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D DM55_2695 putative FMN-binding domain protein K07734 paiB; transcriptional regulator D DM55_2446 hypothetical protein K07735 algH; putative transcriptional regulator D DM55_457 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D DM55_2381 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D DM55_753 mraZ family protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:bmal03021] D DM55_4147 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D DM55_1323 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DM55_1288 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DM55_1289 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DM55_2361 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DM55_1523 RNA polymerase sigma factor, sigma-70 family protein K03086 rpoD; RNA polymerase primary sigma factor D DM55_3401 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D DM55_3199 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D DM55_1924 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_2539 RNA polymerase sigma-70 factor, family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_2588 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_3636 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_3706 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_4327 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_44 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D DM55_4332 RNA polymerase sigma factor, sigma-70 family protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D DM55_1058 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D DM55_1087 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D DM55_882 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA D DM55_3083 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D DM55_2312 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D DM55_1283 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D DM55_1213 hypothetical protein K03599 sspA; stringent starvation protein A D DM55_1212 stringent starvation B family protein K03600 sspB; stringent starvation protein B D DM55_1925 hypothetical protein K03597 rseA; sigma-E factor negative regulatory protein RseA D DM55_1926 mucB/RseB family protein K03598 rseB; sigma-E factor negative regulatory protein RseB D DM55_457 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D DM55_2746 greA; transcription elongation factor GreA domain protein K03624 greA; transcription elongation factor GreA D DM55_2365 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D DM55_5 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:bmal03019] D DM55_1908 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D DM55_2546 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-] D DM55_1931 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DM55_3113 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DM55_668 ribonuclease family protein K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D DM55_1869 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D DM55_1648 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D DM55_2523 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D DM55_1291 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D DM55_327 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DM55_2602 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D DM55_5 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D DM55_1457 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DM55_2442 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DM55_3128 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_3186 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_2760 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D DM55_1463 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D DM55_711 NUDIX domain protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D DM55_243 RraA family protein K02553 rraA; regulator of ribonuclease activity A D DM55_1083 P-loop ATPase family protein K06958 rapZ; RNase adapter protein RapZ D DM55_2208 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:bmal03011] D DM55_1832 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D DM55_205 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D DM55_1303 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D DM55_1322 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D DM55_1314 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D DM55_42 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D DM55_1293 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D DM55_1311 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8 D DM55_1442 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9 D DM55_1296 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D DM55_1321 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D DM55_1292 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D DM55_1320 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D DM55_1310 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D DM55_2601 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D DM55_1858 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D DM55_1306 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D DM55_40 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D DM55_1301 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D DM55_1771 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D DM55_911 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DM55_3404 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D DM55_1285 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D DM55_1300 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D DM55_1297 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D DM55_1298 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D DM55_1309 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5 D DM55_1312 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D DM55_39 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D DM55_1286 ribosomal L10 family protein K02864 RP-L10; large subunit ribosomal protein L10 D DM55_1284 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D DM55_1287 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D DM55_1443 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D DM55_1307 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D DM55_1316 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D DM55_1304 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D DM55_1324 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D DM55_1313 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D DM55_1861 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D DM55_3058 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D DM55_716 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D DM55_1302 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D DM55_1299 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D DM55_1308 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D DM55_715 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D DM55_359 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D DM55_1305 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D DM55_1315 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D DM55_9 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D DM55_1916 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D DM55_360 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D DM55_399 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D DM55_3057 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D DM55_1319 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D DM55_1074 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D DM55_4130 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DM55_1351 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DM55_1356 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_2643 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_4126 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_1352 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DM55_4129 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:bmal03009] D DM55_1931 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DM55_1869 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D DM55_1932 era; GTP-binding protein Era K03595 era; GTPase D DM55_714 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D DM55_457 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D DM55_3083 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D DM55_2312 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D DM55_1283 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D DM55_2480 pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D DM55_1613 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D DM55_1552 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DM55_366 ubiE/COQ5 methyltransferase family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DM55_1069 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D DM55_666 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D DM55_980 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DM55_752 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D DM55_1111 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DM55_1913 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DM55_3112 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D DM55_2749 ftsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D DM55_2548 rlmH; rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D DM55_459 met-10+ like-family protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D DM55_1414 THUMP domain protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D DM55_3193 rlmN; 23S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D DM55_3196 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D DM55_3081 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D DM55_1909 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D DM55_3172 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DM55_1778 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D DM55_208 pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D DM55_229 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D DM55_1859 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D DM55_3166 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D DM55_695 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D DM55_218 prmB; (glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D DM55_312 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D DM55_1908 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D DM55_2546 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-] D DM55_2447 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D DM55_3847 hypothetical protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D DM55_1867 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D DM55_3187 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D DM55_3185 hflX; GTP-binding protein HflX K03665 hflX; GTPase D DM55_1696 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D DM55_2362 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D DM55_3085 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D DM55_3082 hypothetical protein K09748 rimP; ribosome maturation factor RimP D DM55_1891 S4 domain protein K14761 rlbA; ribosome-associated protein D DM55_2549 oligomerization domain protein K09710 ybeB; ribosome-associated protein D DM55_1624 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor D DM55_1871 hypothetical protein K09889 yjgA; ribosome-associated protein D DM55_1086 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D DM55_4102 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase D DM55_1915 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:bmal03016] D DM55_668 ribonuclease family protein K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D DM55_520 poly A polymerase head domain protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D DM55_249 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DM55_710 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D DM55_369 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DM55_4516 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D DM55_647 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DM55_2068 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D DM55_2108 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D DM55_617 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DM55_338 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D DM55_1596 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DM55_2111 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D DM55_3055 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D DM55_2340 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D DM55_299 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D DM55_2144 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D DM55_3190 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D DM55_3059 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D DM55_3060 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D DM55_1436 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DM55_3489 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DM55_317 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D DM55_1435 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D DM55_2572 threonyl and Alanyl tRNA synthetase second additional domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D DM55_4514 threonyl and Alanyl tRNA synthetase second additional domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D DM55_1222 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DM55_3510 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DM55_2297 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D DM55_3300 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D DM55_3086 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D DM55_346 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_3368 beta-eliminating lyase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_1696 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D DM55_1468 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D DM55_394 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D DM55_979 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D DM55_398 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D DM55_2358 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D DM55_687 RNB domain protein K01147 rnb; exoribonuclease II [EC:3.1.13.1] D DM55_1249 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D DM55_4093 ccmA; heme ABC exporter, ATP-binding protein CcmA K06020 ettA; energy-dependent translational throttle protein EttA D DM55_1620 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D DM55_1619 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D DM55_2524 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D DM55_4622 aminoacyl-tRNA editing domain protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D DM55_166 cytidine and deoxycytidylate deaminase zinc-binding region family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D DM55_128 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D DM55_1426 TIM-barrel , nifR3 family protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D DM55_1626 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D DM55_3447 methyltransferase domain protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D DM55_305 RNA methyltransferase, TrmH , group 1 family protein K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D DM55_1860 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D DM55_829 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D DM55_190 spoU rRNA Methylase family protein K03437 spoU; RNA methyltransferase, TrmH family D DM55_1421 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D DM55_577 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D DM55_2137 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D DM55_344 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D DM55_65 aminomethyltransferase folate-binding domain protein K06980 ygfZ; tRNA-modifying protein YgfZ D DM55_952 mnmC; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D DM55_1399 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D DM55_1557 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D DM55_1559 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D DM55_1558 radical SAM superfamily protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D DM55_1584 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D DM55_1761 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D DM55_1400 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D DM55_296 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D DM55_230 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D DM55_3406 tRNA threonylcarbamoyl adenosine modification protein YgjD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D DM55_1760 tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D DM55_1754 thiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D DM55_3113 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D DM55_2602 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:bmal03012] D DM55_3084 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D DM55_3056 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D DM55_221 ABC transporter family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D DM55_204 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D DM55_1280 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DM55_1295 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DM55_1294 fusA; translation elongation factor G K02355 fusA; elongation factor G D DM55_1503 fusA; translation elongation factor G K02355 fusA; elongation factor G D DM55_3255 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D DM55_4087 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D DM55_202 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D DM55_4086 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D DM55_1073 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D DM55_1318 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D DM55_2247 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D DM55_1938 efp; translation elongation factor P K02356 efp; elongation factor P D DM55_337 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D DM55_2662 RF-1 domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:bmal03110] D DM55_378 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D DM55_16 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D DM55_97 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D DM55_455 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D DM55_2495 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D DM55_1457 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DM55_342 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D DM55_848 hsp70 family protein K04046 yegD; hypothetical chaperone protein D DM55_2442 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DM55_1458 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D DM55_343 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D DM55_324 hsp33 family protein K04083 hslO; molecular chaperone Hsp33 D DM55_1455 grpE family protein K03687 GRPE; molecular chaperone GrpE D DM55_3771 hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D DM55_626 hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D DM55_2710 hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D DM55_1454 S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D DM55_627 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D DM55_2441 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D DM55_1927 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_1703 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D DM55_4618 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DM55_2750 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D DM55_985 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DM55_3584 ATP synthase A chain family protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D DM55_2888 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2951 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2078 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2092 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_826 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DM55_2844 LTXXQ motif family protein K06006 cpxP; periplasmic protein CpxP/Spy D DM55_1950 hypothetical protein K09796 pccA; periplasmic copper chaperone A D DM55_4268 subtilase family protein K14645 K14645; serine protease [EC:3.4.21.-] D DM55_1023 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D DM55_301 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D DM55_302 cyp18; peptidyl-prolyl cis-trans isomerase cyp18 K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D DM55_89 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D DM55_357 FKBP-type peptidyl-prolyl cis-trans isomerase family protein K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D DM55_309 putative peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D DM55_81 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D DM55_1611 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D DM55_4 trxA; thioredoxin K03671 TXN; thioredoxin D DM55_1755 thioredoxin family protein K05838 ybbN; putative thioredoxin D DM55_825 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D DM55_4085 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D DM55_615 dsbA; disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D DM55_1809 disulfide bond formation DsbB family protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D DM55_4106 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D DM55_1326 cytochrome C biogenesis transmembrane region family protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] C 04131 Membrane trafficking [BR:bmal04131] D DM55_3194 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D DM55_1804 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D DM55_662 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DM55_823 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D DM55_1691 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DM55_2495 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:bmal03051] D DM55_2495 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:bmal03032] D DM55_2736 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D DM55_951 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D DM55_3061 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D DM55_1833 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D DM55_400 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DM55_38 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D DM55_3402 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D DM55_1102 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM55_2526 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DM55_401 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DM55_2035 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DM55_645 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DM55_62 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DM55_2735 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DM55_3 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DM55_191 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D DM55_3417 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DM55_210 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DM55_1465 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D DM55_1826 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D DM55_402 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D DM55_2254 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DM55_2253 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DM55_1542 topB; DNA topoisomerase III family protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:bmal03036] D DM55_1931 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D DM55_4721 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_944 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_2085 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_906 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_2811 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_3631 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_4777 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_4861 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_3379 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_951 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D DM55_3061 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D DM55_1833 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D DM55_400 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D DM55_1393 ferritin-like domain protein K04047 dps; starvation-inducible DNA-binding protein D DM55_1427 bacterial regulatory , Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D DM55_3128 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_3186 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D DM55_3948 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D DM55_3668 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D DM55_1749 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_946 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_964 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_2697 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_1853 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_1366 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_4897 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_3311 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_4203 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_4767 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DM55_212 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D DM55_2062 scpA/B family protein K05896 scpA; segregation and condensation protein A D DM55_3080 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D DM55_740 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D DM55_326 septum formation initiator family protein K05589 ftsB; cell division protein FtsB D DM55_4602 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_4580 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_750 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D DM55_2336 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D DM55_2518 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D DM55_751 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D DM55_741 cell division FtsQ family protein K03589 ftsQ; cell division protein FtsQ D DM55_745 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D DM55_739 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DM55_2044 cell division ZapA family protein K09888 zapA; cell division protein ZapA D DM55_731 hypothetical protein K18778 zapD; cell division protein ZapD D DM55_3095 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE D DM55_1759 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DM55_1708 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DM55_2344 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D DM55_2345 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D DM55_2346 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D DM55_449 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator D DM55_1566 cell shape determining , MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D DM55_4354 cell shape determining , MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D DM55_1565 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D DM55_1564 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D DM55_1562 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D DM55_981 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DM55_2059 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DM55_3703 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DM55_982 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DM55_3702 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DM55_2254 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DM55_2253 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DM55_979 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D DM55_980 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DM55_460 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D DM55_1763 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D DM55_2070 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D DM55_1328 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:bmal03400] D DM55_1762 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM55_2006 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D DM55_4109 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D DM55_1081 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D DM55_2511 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D DM55_4147 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D DM55_732 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM55_372 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DM55_1520 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DM55_228 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D DM55_1521 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D DM55_298 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D DM55_910 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D DM55_1080 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D DM55_2218 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DM55_1571 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D DM55_336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DM55_210 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DM55_3417 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D DM55_1100 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DM55_3635 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D DM55_4138 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D DM55_1940 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D DM55_2145 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D DM55_1288 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D DM55_1289 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D DM55_1323 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D DM55_2361 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D DM55_144 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D DM55_308 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D DM55_1469 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D DM55_389 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DM55_3410 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DM55_2526 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D DM55_401 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D DM55_2035 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D DM55_645 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D DM55_62 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D DM55_2735 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DM55_3 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DM55_1102 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM55_2660 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D DM55_2659 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D DM55_2661 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D DM55_1672 recA; protein RecA K03553 recA; recombination protein RecA D DM55_1430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D DM55_1431 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D DM55_1429 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D DM55_997 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D DM55_41 putative primosomal replication protein n K02686 priB; primosomal replication protein N D DM55_223 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D DM55_1398 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D DM55_1933 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D DM55_1 recR; recombination protein RecR K06187 recR; recombination protein RecR D DM55_1450 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DM55_1826 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D DM55_402 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D DM55_951 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D DM55_1427 bacterial regulatory , Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D DM55_3061 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D DM55_1833 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D DM55_1291 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D DM55_4721 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_944 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_2085 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_906 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_2811 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_3631 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_4777 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_4861 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_3379 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D DM55_2228 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DM55_116 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DM55_1053 putative cell division inhibitor protein K14160 imuA; protein ImuA D DM55_1052 impB/mucB/samB family protein K14161 imuB; protein ImuB D DM55_1051 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D DM55_1671 recX family protein K03565 recX; regulatory protein D DM55_1131 hypothetical protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D DM55_3174 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DM55_703 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM55_3777 ribonucleotide reductase, barrel domain protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM55_702 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:bmal03029] D DM55_1215 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D DM55_3084 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D DM55_3056 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D DM55_204 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D DM55_1280 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DM55_1295 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DM55_1294 fusA; translation elongation factor G K02355 fusA; elongation factor G D DM55_1503 fusA; translation elongation factor G K02355 fusA; elongation factor G D DM55_1932 era; GTP-binding protein Era K03595 era; GTPase D DM55_1436 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D DM55_647 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D DM55_1596 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D DM55_617 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D DM55_1568 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DM55_1810 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D DM55_1569 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D DM55_1567 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D DM55_1102 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM55_197 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D DM55_1457 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DM55_1455 grpE family protein K03687 GRPE; molecular chaperone GrpE D DM55_2442 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DM55_627 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D DM55_2441 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES D DM55_1458 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D DM55_346 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_3368 beta-eliminating lyase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_343 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D DM55_4085 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D DM55_2070 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D DM55_842 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D DM55_835 cytochrome c oxidase assembly CtaG/Cox11 family protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D DM55_841 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D DM55_396 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DM55_839 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D DM55_2813 SCO1/SenC family protein K07152 SCO1; protein SCO1 D DM55_4688 redoxin family protein K07152 SCO1; protein SCO1 D DM55_3244 SCO1/SenC family protein K07152 SCO1; protein SCO1 D DM55_1951 ahpC/TSA family protein K07152 SCO1; protein SCO1 D DM55_843 redoxin family protein K07152 SCO1; protein SCO1 D DM55_2495 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:bmal02000] D DM55_2527 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D DM55_861 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D DM55_1607 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D DM55_3801 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D DM55_3486 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D DM55_1954 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D DM55_2977 cyclic peptide transporter family protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D DM55_1248 ABC transporter family protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D DM55_2252 ccmA; heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein D DM55_115 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D DM55_114 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D DM55_113 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D DM55_112 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D DM55_3435 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D DM55_2412 bacterial extracellular solute-binding family protein K02020 modA; molybdate transport system substrate-binding protein D DM55_3436 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D DM55_3437 ABC transporter family protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D DM55_4907 substrate binding domain of ABC-type glycine betaine transport system family protein K15551 tauA; taurine transport system substrate-binding protein D DM55_4905 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D DM55_4906 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D DM55_4219 ABC transporter, substrate-binding , aliphatic sulfonates family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_1201 bacterial extracellular solute-binding s, 3 family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_2928 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein D DM55_2915 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_2931 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_1199 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein D DM55_2916 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_2930 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_1200 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D DM55_4420 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DM55_2655 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D DM55_4419 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DM55_2654 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D DM55_4418 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DM55_2653 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D DM55_3149 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein D DM55_3146 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D DM55_3147 binding--dependent transport system inner membrane component family protein K11075 potH; putrescine transport system permease protein D DM55_3148 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D DM55_2684 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DM55_3962 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DM55_1527 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D DM55_2681 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_2683 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_3960 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_3963 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D DM55_2680 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DM55_3961 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D DM55_4063 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DM55_4068 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DM55_4073 choX; choline ABC transporter, periplasmic binding family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D DM55_3020 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D DM55_3016 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D DM55_3019 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D DM55_3018 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D DM55_2195 binding--dependent transport system inner membrane component family protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D DM55_2196 ABC transporter family protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D DM55_1732 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_4584 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_2332 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_2329 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D DM55_2330 binding--dependent transport system inner membrane component family protein K17316 gtsB; glucose/mannose transport system permease protein D DM55_2331 binding--dependent transport system inner membrane component family protein K17317 gtsC; glucose/mannose transport system permease protein D DM55_678 periplasmic binding s and sugar binding domain of LacI family protein K10537 araF; L-arabinose transport system substrate-binding protein D DM55_676 branched-chain amino acid transport system / permease component family protein K10538 araH; L-arabinose transport system permease protein D DM55_677 ABC transporter family protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D DM55_2962 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DM55_4338 ABC sugar (Ribose) transporter, periplasmic substrate-binding subunit K10439 rbsB; ribose transport system substrate-binding protein D DM55_4790 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein D DM55_2964 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DM55_4335 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D DM55_4336 putative membrane protein K10440 rbsC; ribose transport system permease protein D DM55_4337 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DM55_2963 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D DM55_3970 periplasmic binding s and sugar binding domain of LacI family protein K17205 xltC; putative xylitol transport system substrate-binding protein D DM55_3969 branched-chain amino acid transport system / permease component family protein K17206 xltB; putative xylitol transport system permease protein D DM55_3968 ABC transporter family protein K17207 xltA; putative xylitol transport system ATP-binding protein D DM55_1259 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D DM55_1258 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D DM55_1257 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D DM55_1256 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D DM55_1728 bacterial extracellular solute-binding family protein K10227 smoE; polyol transport system substrate-binding protein D DM55_1729 binding--dependent transport system inner membrane component family protein K10228 smoF; polyol transport system permease protein D DM55_1730 binding--dependent transport system inner membrane component family protein K10229 smoG; polyol transport system permease protein D DM55_3159 hypothetical protein K02069 STAR2; UDP-glucose/iron transport system permease protein D DM55_3158 ABC transporter family protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D DM55_776 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D DM55_1241 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D DM55_774 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D DM55_1242 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D DM55_775 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D DM55_1243 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D DM55_777 hypothetical protein K18480 linN; cholesterol transport system auxiliary component D DM55_3737 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein D DM55_1239 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein D DM55_1238 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein D DM55_4588 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D DM55_4587 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein D DM55_4586 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D DM55_2133 periplasmic binding s and sugar binding domain of LacI family protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D DM55_4601 periplasmic binding s and sugar binding domain of LacI family protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D DM55_4788 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D DM55_2132 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D DM55_4789 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_2131 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D DM55_2753 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D DM55_2754 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D DM55_2755 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D DM55_2756 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D DM55_1377 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D DM55_1380 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D DM55_1005 bacterial extracellular solute-binding s, 3 family protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D DM55_1972 lysine-arginine-ornithine-binding periplasmic family protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D DM55_2186 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D DM55_4277 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D DM55_1962 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D DM55_2187 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D DM55_4276 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D DM55_2185 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D DM55_4278 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D DM55_1963 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D DM55_2188 lysine-arginine-ornithine-binding periplasmic family protein K10014 hisJ; histidine transport system substrate-binding protein D DM55_3716 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D DM55_3717 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D DM55_3718 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D DM55_633 gltI; glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D DM55_631 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D DM55_632 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D DM55_630 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D DM55_2903 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_2325 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_2902 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D DM55_2324 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein D DM55_2323 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D DM55_1000 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_941 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_971 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_975 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_1187 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_2600 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_1959 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_4771 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_3005 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D DM55_2124 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_972 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_976 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_2470 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_1188 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein D DM55_2125 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_977 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2471 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_973 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_1189 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D DM55_969 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2472 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_1190 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D DM55_2473 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_970 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_978 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_1191 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_2126 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D DM55_1847 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DM55_846 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein D DM55_1846 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D DM55_1845 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D DM55_2288 periplasmic binding domain protein K11959 urtA; urea transport system substrate-binding protein D DM55_2287 urtB; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D DM55_2286 urtC; urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D DM55_2285 urtD; urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D DM55_2284 urtE; urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein D DM55_1056 ABC transporter substrate binding family protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D DM55_1055 branched-chain amino acid transport system / permease component family protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D DM55_1054 ABC transporter family protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D DM55_2944 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DM55_3264 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DM55_3270 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D DM55_2945 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D DM55_2946 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D DM55_3266 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D DM55_3390 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein D DM55_3389 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein D DM55_3388 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein D DM55_3387 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D DM55_3386 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D DM55_503 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DM55_610 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D DM55_504 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D DM55_505 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D DM55_507 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein D DM55_508 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein D DM55_4526 bacterial extracellular solute-binding s, 5 Middle family protein K13889 gsiB; glutathione transport system substrate-binding protein D DM55_4527 binding--dependent transport system inner membrane component family protein K13890 gsiC; glutathione transport system permease protein D DM55_4528 gsiD; glutathione transport system permease protein gsiD K13891 gsiD; glutathione transport system permease protein D DM55_4525 nikE; nickel import ATP-binding protein NikE K13892 gsiA; glutathione transport system ATP-binding protein D DM55_4246 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DM55_4257 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D DM55_4245 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D DM55_4244 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D DM55_4243 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D DM55_4242 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D DM55_255 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D DM55_254 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein D DM55_253 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein D DM55_252 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D DM55_2975 periplasmic binding family protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D DM55_2973 fecCD transport family protein K23228 fhuB; ferric hydroxamate transport system permease protein D DM55_2972 putative siderophore transport system ATP-binding protein YusV K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D DM55_3955 hmuT; hemin-binding periplasmic protein hmuT K25132 hmuT; heme transport system substrate-binding protein D DM55_3953 fecCD transport family protein K25133 hmuU; heme transport system permease protein D DM55_3952 hmuV; hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D DM55_2416 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D DM55_2053 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D DM55_2418 fecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D DM55_2047 fecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D DM55_2048 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D DM55_2415 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D DM55_1723 periplasmic solute binding family protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D DM55_1721 ABC 3 transport family protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D DM55_1722 ABC transporter family protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D DM55_1478 ABC-2 type transporter family protein K09688 kpsM; capsular polysaccharide transport system permease protein D DM55_1477 chain length determinant family protein K10107 kpsE; capsular polysaccharide transport system permease protein D DM55_1480 ABC transporter family protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D DM55_2457 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D DM55_2458 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D DM55_2033 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D DM55_2032 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D DM55_1089 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D DM55_121 ABC-2 type transporter, NodJ family protein K09694 nodJ; lipooligosaccharide transport system permease protein D DM55_120 nodI; nodulation ABC transporter NodI K09695 nodI; lipooligosaccharide transport system ATP-binding protein D DM55_2865 ABC-2 transporter family protein K19341 nosY; Cu-processing system permease protein D DM55_2866 ABC transporter family protein K19340 nosF; Cu-processing system ATP-binding protein D DM55_334 liporeleasing system, transmembrane , LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein D DM55_333 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D DM55_1236 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D DM55_2871 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D DM55_1045 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein D DM55_3574 yhhJ; inner membrane transport permease yhhJ K01992 ABC-2.P; ABC-2 type transport system permease protein D DM55_1237 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DM55_2870 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DM55_1044 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D DM55_3566 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D DM55_3729 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D DM55_2570 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D DM55_3565 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DM55_87 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DM55_3728 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D DM55_1986 ABC transporter family protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D DM55_587 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D DM55_11 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D DM55_1890 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D DM55_2775 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D DM55_2927 MFS transporter, metabolite:H+ symporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D DM55_3630 sugar (and other) transporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D DM55_4891 sugar (and other) transporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D DM55_3849 major Facilitator Superfamily protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D DM55_2733 sugar (and other) transporter family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D DM55_3123 sugar (and other) transporter family protein K08178 JEN; MFS transporter, SHS family, lactate transporter D DM55_4670 major Facilitator Superfamily protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D DM55_2398 sugar (and other) transporter family protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D DM55_3246 putative 4-hydroxybenzoate transporter transmembrane protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D DM55_1744 sugar (and other) transporter family protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D DM55_3647 MFS transporter, aromatic acid:H+ symporter family protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D DM55_4794 sugar (and other) transporter family protein K05819 mhpT; MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter D DM55_3003 major Facilitator Superfamily protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D DM55_4575 major Facilitator Superfamily protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_2225 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_2226 major Facilitator Superfamily protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_636 major Facilitator Superfamily protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D DM55_225 major Facilitator Superfamily protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D DM55_446 major Facilitator Superfamily protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D DM55_4549 sugar (and other) transporter family protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D DM55_2320 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D DM55_4008 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D DM55_1628 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D DM55_2402 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D DM55_4476 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D DM55_2098 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D DM55_1157 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D DM55_3087 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D DM55_4044 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D DM55_2147 major Facilitator Superfamily protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D DM55_471 sugar (and other) transporter family protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D DM55_4652 sugar (and other) transporter family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D DM55_4466 sugar (and other) transporter family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D DM55_820 ptsP; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D DM55_819 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr D DM55_1025 ptsP; phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D DM55_1024 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D DM55_818 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D DM55_1085 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D DM55_907 MIP channel s family protein K06188 aqpZ; aquaporin Z D DM55_1639 MIP channel s family protein K02440 glpF; glycerol uptake facilitator D DM55_4229 trkA-N domain protein K10716 kch; voltage-gated potassium channel D DM55_813 amt; ammonium transporter family protein K03320 amt; ammonium transporter, Amt family D DM55_1423 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_4362 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_2634 putative gst-related protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_3685 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_1971 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_3602 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_519 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D DM55_1213 hypothetical protein K03599 sspA; stringent starvation protein A D DM55_3195 inhibitor of apoptosis-promoting Bax1 family protein K19416 yccA; modulator of FtsH protease D DM55_152 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D DM55_2859 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D DM55_1471 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D DM55_902 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DM55_900 motB; motility protein B K02557 motB; chemotaxis protein MotB D DM55_3980 motA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D DM55_649 motA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D DM55_3979 biopolymer transport ExbD/TolR family protein K03559 exbD; biopolymer transport protein ExbD D DM55_648 biopolymer transport ExbD/TolR family protein K03559 exbD; biopolymer transport protein ExbD D DM55_2377 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D DM55_2376 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D DM55_2854 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D DM55_4592 corA-like Mg2+ transporter family protein K16074 zntB; zinc transporter D DM55_2302 crcB-like family protein K06199 crcB; fluoride exporter D DM55_4261 bestrophin, RFP-TM, chloride channel family protein K08994 yneE; ion channel-forming bestrophin family protein D DM55_726 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DM55_3444 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DM55_4069 gram-negative porin family protein K08720 ompU; outer membrane protein OmpU D DM55_1825 ompA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D DM55_867 ompA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D DM55_2077 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2093 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2889 hypothetical protein K07347 fimD; outer membrane usher protein D DM55_4255 autotransporter beta-domain protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-] D DM55_2046 tonB dependent receptor family protein K16092 btuB; vitamin B12 transporter D DM55_3957 TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D DM55_2981 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D DM55_1791 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D DM55_4334 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D DM55_3474 tonB dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D DM55_2414 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D DM55_4626 czcC; cobalt-zinc-cadmium resistance protein CzcC K15725 czcC; outer membrane protein, heavy metal efflux system D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_3570 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_4612 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_1710 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_437 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DM55_1476 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein D DM55_552 carbohydrate-selective porin, OprB family protein K07267 oprB; porin D DM55_197 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D DM55_3188 yfgL; outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB D DM55_314 nlpB/DapX lipofamily protein K07287 bamC; outer membrane protein assembly factor BamC D DM55_3067 nlpB/DapX lipofamily protein K07287 bamC; outer membrane protein assembly factor BamC D DM55_3173 yfiO; outer membrane assembly lipoYfiO family protein K05807 bamD; outer membrane protein assembly factor BamD D DM55_651 smpA / OmlA family protein K06186 bamE; outer membrane protein assembly factor BamE D DM55_2064 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA D DM55_2065 hypothetical protein K09800 tamB; translocation and assembly module TamB D DM55_4778 coiled stalk of trimeric autotransporter adhesin family protein K21449 ata; trimeric autotransporter adhesin D DM55_2808 coiled stalk of trimeric autotransporter adhesin family protein K21449 ata; trimeric autotransporter adhesin D DM55_1090 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D DM55_1091 lipopolysaccharide-assembly, LptC-related family protein K11719 lptC; lipopolysaccharide export system protein LptC D DM55_1610 organic solvent tolerance family protein K04744 lptD; LPS-assembly protein D DM55_646 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein D DM55_4915 cellulose synthase operon C family protein K20543 bcsC; cellulose synthase operon protein C D DM55_4863 bipB; translocator protein BipB K13285 sipB; invasin B D DM55_4860 type III effector protein IpaD/SipD/SspD K13287 sipD; invasin D D DM55_1622 transporter associated domain protein K06189 corC; hemolysin (HlyC) family protein D DM55_1160 lrgA family protein K06518 cidA; holin-like protein D DM55_3544 lysP; lysine-specific permease K11733 lysP; lysine-specific permease D DM55_4766 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP D DM55_4098 gabP; GABA permease K11735 gabP; GABA permease D DM55_2657 amino acid permease family protein K16234 hutT; histidine transporter D DM55_3014 arcD; arginine-ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D DM55_4620 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease D DM55_1014 eat; ethanolamine permease K16238 eat; ethanolamine permease D DM55_4543 amino acid permease family protein K16263 yjeH; amino acid efflux transporter D DM55_572 heavy metal efflux pump, CzcA family protein K07787 cusA; copper/silver efflux system protein D DM55_4613 acrB/AcrD/AcrF family protein K18307 mexI; multidrug efflux pump D DM55_2827 acrB/AcrD/AcrF family protein K18303 mexK; multidrug efflux pump D DM55_2950 acrB/AcrD/AcrF family protein K18095 mexY; multidrug efflux pump D DM55_1709 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D DM55_2910 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump D DM55_2567 sugE; quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D DM55_1758 eamA-like transporter family protein K15268 eamA; O-acetylserine/cysteine efflux transporter D DM55_3836 eamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD D DM55_2734 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein D DM55_639 transporter, gluconate:H+ symporter family protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family D DM55_4522 transporter, betaine/carnitine/choline transporter family protein K02168 betT; choline/glycine/proline betaine transport protein D DM55_4320 sodium/calcium exchanger family protein K07300 chaA; Ca2+:H+ antiporter D DM55_3991 putative sodium:solute symporter, subfamily protein K14393 actP; cation/acetate symporter D DM55_801 transporter, solute:sodium symporter family protein K14393 actP; cation/acetate symporter D DM55_802 dicarboxylate symporter family protein K11103 dctA; aerobic C4-dicarboxylate transport protein D DM55_656 dicarboxylate symporter family protein K11103 dctA; aerobic C4-dicarboxylate transport protein D DM55_3506 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D DM55_1094 trkA-N domain protein K03455 KEA1_2_3; K+:H+ antiporter D DM55_4599 ketopantoate reductase PanE/ApbA family protein K26735 KEA4_5_6; K+:H+ antiporter D DM55_2877 sodium/hydrogen exchanger family protein K26731 CHX; K+:H+ antiporter D DM55_4304 sodium/hydrogen exchanger family protein K26731 CHX; K+:H+ antiporter D DM55_4824 permease for cytosine/purine, uracil, thiamine, allantoin family protein K10974 codB; cytosine permease D DM55_538 putative pyrimidine permease RutG K09016 rutG; putative pyrimidine permease RutG D DM55_2545 pbuX; xanthine permease family protein K16345 xanP; xanthine permease XanP D DM55_1806 putative adenine permease PurP K06901 pbuG; adenine/guanine/hypoxanthine permease D DM55_2503 benzoate transporter family protein K05782 benE; benzoate membrane transport protein D DM55_2830 CBS domain protein K03281 clcA; chloride channel protein, CIC family D DM55_4817 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D DM55_4316 CBS domain protein K03281 clcA; chloride channel protein, CIC family D DM55_2348 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D DM55_3493 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D DM55_2262 chromate transporter family protein K07240 chrA; chromate transporter D DM55_3641 chr; chromate transporter, chromate ion transporter family protein K07240 chrA; chromate transporter D DM55_3642 chr; chromate transporter, chromate ion transporter family protein K07240 chrA; chromate transporter D DM55_540 chromate transporter family protein K07240 chrA; chromate transporter D DM55_541 chromate transporter family protein K07240 chrA; chromate transporter D DM55_1515 chr; chromate transporter, chromate ion transporter family protein K07240 chrA; chromate transporter D DM55_2986 hoxN; high-affinity nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D DM55_3120 sulfate transporter family protein K03321 TC.SULP; sulfate permease, SulP family D DM55_3150 metal ion transporter, metal ion family protein K03322 mntH; manganese transport protein D DM55_2083 metal ion transporter, metal ion family protein K03322 mntH; manganese transport protein D DM55_4259 mntH; manganese transport protein mntH K03322 mntH; manganese transport protein D DM55_1772 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D DM55_3178 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein D DM55_3669 lysE type translocator family protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D DM55_2308 lysE type translocator family protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D DM55_925 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein D DM55_4896 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein D DM55_496 lysE type translocator family protein K05835 rhtC; threonine efflux protein D DM55_2744 lysE type translocator family protein K11250 leuE; leucine efflux protein D DM55_1688 azlC family protein K26605 azlC; branched chain amino acid efflux pump D DM55_1689 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump D DM55_1229 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D DM55_4321 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D DM55_745 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D DM55_1804 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D DM55_4135 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter D DM55_4137 fe2+ transport family protein K07230 p19; periplasmic iron binding protein D DM55_3981 hypothetical protein K03832 tonB; periplasmic protein TonB D DM55_1663 hypothetical protein K03832 tonB; periplasmic protein TonB D DM55_2353 hypothetical protein K03832 tonB; periplasmic protein TonB D DM55_2373 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D DM55_2375 tolA; protein TolA K03646 tolA; colicin import membrane protein D DM55_2374 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D DM55_2718 mdcA; malonate decarboxylase, alpha subunit K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187] D DM55_2719 mdcC; malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit D DM55_2224 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D DM55_2223 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D DM55_2221 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D DM55_2099 efflux transporter, RND family, MFP subunit K03543 emrA; membrane fusion protein, multidrug efflux system D DM55_4480 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system D DM55_3088 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system D DM55_4048 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system D DM55_4627 czcB; cobalt-zinc-cadmium resistance protein CzcB K15727 czcB; membrane fusion protein, heavy metal efflux system D DM55_571 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D DM55_860 hlyD secretion family protein K13408 cvaA; membrane fusion protein D DM55_4614 efflux transporter, RND family, MFP subunit K18306 mexH; membrane fusion protein, multidrug efflux system D DM55_2949 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D DM55_1708 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DM55_3617 cobQ/CobB/MinD/ParA nucleotide binding domain protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D DM55_3306 entericidin EcnA/B family protein K16348 ecnB; entericidin B D DM55_4178 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D DM55_3928 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D DM55_1651 copper resistance D family protein K07245 pcoD; copper resistance protein D D DM55_2481 copC domain protein K07156 copC; copper resistance protein C D DM55_4405 mltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:bmal02044] D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_860 hlyD secretion family protein K13408 cvaA; membrane fusion protein D DM55_861 ABC transporter family protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D DM55_1145 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C D DM55_1142 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D DM55_1143 gspE; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D DM55_4934 type II/IV secretion system family protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D DM55_1144 gspF; type II secretion system protein F K02455 gspF; general secretion pathway protein F D DM55_1146 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D DM55_1147 gspH; type II secretion system protein H K02457 gspH; general secretion pathway protein H D DM55_1148 gspI; type II secretion system protein I K02458 gspI; general secretion pathway protein I D DM55_1149 putative general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D DM55_1150 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D DM55_1151 gspL; type II secretion system protein L K02461 gspL; general secretion pathway protein L D DM55_1152 type II secretion system (T2SS), M family protein K02462 gspM; general secretion pathway protein M D DM55_1153 type II secretion system (T2SS), N family protein K02463 gspN; general secretion pathway protein N D DM55_729 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D DM55_1666 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D DM55_727 type II/IV secretion system family protein K02652 pilB; type IV pilus assembly protein PilB D DM55_728 type II secretion system (T2SS), F family protein K02653 pilC; type IV pilus assembly protein PilC D DM55_2386 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE D DM55_1263 pilQ; type IV pilus secretin PilQ family protein K02666 pilQ; type IV pilus assembly protein PilQ D DM55_4939 type II/IV secretion system family protein K02669 pilT; twitching motility protein PilT D DM55_2384 putative prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D DM55_2382 type II transport GspH family protein K08084 fimT; type IV fimbrial biogenesis protein FimT D DM55_3141 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D DM55_2933 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D DM55_3139 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D DM55_2934 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D DM55_3138 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D DM55_2935 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D DM55_3137 response regulator K02282 cpaE; pilus assembly protein CpaE D DM55_2937 cobQ/CobB/MinD/ParA nucleotide binding domain protein K02282 cpaE; pilus assembly protein CpaE D DM55_3136 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D DM55_2938 ABC transporter family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D DM55_2939 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D DM55_3135 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D DM55_2940 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D DM55_3134 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D DM55_3133 tetratricopeptide repeat family protein K27079 tadD; tight adherence protein D D DM55_3131 tad-like Flp pilus-assembly family protein K27080 tadG; tight adherence protein G D DM55_3415 tad-like Flp pilus-assembly family protein K27080 tadG; tight adherence protein G D DM55_3142 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D DM55_2932 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D DM55_2304 YGGT family protein K02221 yggT; YggT family protein D DM55_1840 helix-hairpin-helix motif family protein K02237 comEA; competence protein ComEA D DM55_14 helix-hairpin-helix motif family protein K02237 comEA; competence protein ComEA D DM55_331 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D DM55_4929 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D DM55_3207 putative transmembrane protein K03220 yscD; type III secretion protein D D DM55_4879 eprI; type III secretion apparatus needle protein K03221 yscF; type III secretion protein F D DM55_3217 secretory of YscJ/FliF family protein K03222 yscJ; type III secretion protein J D DM55_3219 type III secretion apparatus protein, HrpE/YscL family K03223 yscL; type III secretion protein L D DM55_3220 type III secretion apparatus H+-transporting two-sector ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D DM55_3212 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q D DM55_4869 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q D DM55_3211 epaP; type III secretion apparatus protein, YscR/HrcR family K03226 yscR; type III secretion protein R D DM55_3210 type III secretion , HrpO family protein K03227 yscS; type III secretion protein S D DM55_3222 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T D DM55_3214 type III secretion , YscU/HrpY family protein K03229 yscU; type III secretion protein U D DM55_3213 type III secretion , HrcV family protein K03230 yscV; type III secretion protein V D DM55_4874 invA; invasion protein invA K03230 yscV; type III secretion protein V D DM55_4876 type III secretion outer membrane pore, YscC/HrcC family K22504 invG; type III secretion system outer membrane ring protein D DM55_4881 type III secretion apparatus lipoprotein, YscJ/HrcJ family K22505 prgK; type III secretion system inner membrane ring protein D DM55_4872 putative ATP synthase SpaL K22506 spaL; type III secretion system ATPase [EC:7.4.2.8] D DM55_4868 epaP; type III secretion apparatus protein, YscR/HrcR family K22507 spaP; type III secretion system export apparatus protein D DM55_4867 type III secretion , HrpO family protein K22508 spaQ; type III secretion system export apparatus protein D DM55_4866 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K22509 spaR; type III secretion system export apparatus protein D DM55_4865 spaS; surface presentation of antigens protein spaS K22510 spaS; type III secretion system export apparatus switch protein D DM55_4875 type III secretion regulator YopN/LcrE/InvE/MxiC K22511 invE; type III secretion system protein D DM55_4944 bacterial type III secretion family protein K18373 hrpB1; type III secretion protein HrpB1 D DM55_3215 type III secretion protein HrpB1/HrpK K18373 hrpB1; type III secretion protein HrpB1 D DM55_3216 type III secretion protein HrpB2 K18374 hrpB2; type III secretion inner rod protein HrpB2 D DM55_3209 hypothetical protein K18379 hpaA; type III secretion regulatory protein HpaA D DM55_4873 invasion B family protein K22512 spaK; type III secretion system chaperone D DM55_4878 eprH; type III secretion apparatus protein PrgH/EprH K22488 prgH; type III secretion system protein D DM55_4880 type III secretion needle MxiH like family protein K22487 prgJ; type III secretion system protein D DM55_885 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D DM55_887 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D DM55_489 flhB HrpN YscU SpaS family protein K04061 flhB2; flagellar biosynthesis protein D DM55_484 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D DM55_482 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D DM55_481 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D DM55_1164 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DM55_1165 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D DM55_1207 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D DM55_1206 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D DM55_1205 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D DM55_4106 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D DM55_4255 autotransporter beta-domain protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-] D DM55_3871 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_4713 hypothetical protein K11891 impL; type VI secretion system protein ImpL D DM55_3349 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_865 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_4038 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D DM55_3872 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK D DM55_4712 type IV/VI secretion system , DotU family domain protein K11892 impK; type VI secretion system protein ImpK D DM55_3350 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK D DM55_4037 type IV/VI secretion system , DotU family domain protein K11892 impK; type VI secretion system protein ImpK D DM55_3873 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D DM55_4711 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D DM55_3351 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D DM55_3884 hypothetical protein K11895 impH; type VI secretion system protein ImpH D DM55_4703 hypothetical protein K11895 impH; type VI secretion system protein ImpH D DM55_871 hypothetical protein K11895 impH; type VI secretion system protein ImpH D DM55_4026 hypothetical protein K11895 impH; type VI secretion system protein ImpH D DM55_3340 hypothetical protein K11895 impH; type VI secretion system protein ImpH D DM55_3883 hypothetical protein K11896 impG; type VI secretion system protein ImpG D DM55_4702 hypothetical protein K11896 impG; type VI secretion system protein ImpG D DM55_3341 hypothetical protein K11896 impG; type VI secretion system protein ImpG D DM55_2818 hypothetical protein K11896 impG; type VI secretion system protein ImpG D DM55_872 hypothetical protein K11896 impG; type VI secretion system protein ImpG D DM55_4025 hypothetical protein K11896 impG; type VI secretion system protein ImpG D DM55_3882 25-like lysozyme family protein K11897 impF; type VI secretion system protein ImpF D DM55_3342 25-like lysozyme family protein K11897 impF; type VI secretion system protein ImpF D DM55_873 25-like lysozyme family protein K11897 impF; type VI secretion system protein ImpF D DM55_4024 25-like lysozyme family protein K11897 impF; type VI secretion system protein ImpF D DM55_3876 hypothetical protein K11900 impC; type VI secretion system protein ImpC D DM55_4699 hypothetical protein K11900 impC; type VI secretion system protein ImpC D DM55_3344 hypothetical protein K11900 impC; type VI secretion system protein ImpC D DM55_4022 hypothetical protein K11900 impC; type VI secretion system protein ImpC D DM55_3877 hypothetical protein K11901 impB; type VI secretion system protein ImpB D DM55_4698 hypothetical protein K11901 impB; type VI secretion system protein ImpB D DM55_3345 hypothetical protein K11901 impB; type VI secretion system protein ImpB D DM55_3885 hypothetical protein K11902 impA; type VI secretion system protein ImpA D DM55_3346 hypothetical protein K11902 impA; type VI secretion system protein ImpA D DM55_868 hypothetical protein K11902 impA; type VI secretion system protein ImpA D DM55_4020 hypothetical protein K11902 impA; type VI secretion system protein ImpA D DM55_3875 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D DM55_4700 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D DM55_4023 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D DM55_3886 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4705 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_3338 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4028 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4029 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4251 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D DM55_4701 25-like lysozyme family protein K11905 K11905; type VI secretion system protein D DM55_3874 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D DM55_3352 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D DM55_4034 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D DM55_3878 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_4704 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_3339 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_869 AAA domain family protein K11907 vasG; type VI secretion system protein VasG D DM55_4027 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D DM55_3348 hypothetical protein K11890 impM; type VI secretion system protein ImpM D DM55_866 hypothetical protein K11890 impM; type VI secretion system protein ImpM D DM55_3881 impE family protein K11898 impE; type VI secretion system protein ImpE D DM55_2952 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D DM55_2887 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D DM55_2890 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D DM55_2888 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2951 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2078 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2092 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2077 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2093 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2889 hypothetical protein K07347 fimD; outer membrane usher protein D DM55_2094 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2091 fimbrial family protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2079 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2168 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2089 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2090 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_735 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D DM55_826 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D DM55_1402 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D DM55_1282 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D DM55_1403 secF; export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D DM55_2605 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D DM55_1317 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D DM55_707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D DM55_1068 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D DM55_1401 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D DM55_396 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D DM55_1221 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D DM55_1220 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D DM55_1219 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:bmal02042] D DM55_726 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DM55_3444 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D DM55_4770 channel , hemolysin III family protein K11068 hlyIII; hemolysin III D DM55_4813 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3118 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_4519 phosphoesterase family protein K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_3622 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D DM55_4743 collagenase family protein K01387 colA; microbial collagenase [EC:3.4.24.3] C 02022 Two-component system [BR:bmal02022] D DM55_2759 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D DM55_4941 hypothetical protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D DM55_2758 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D DM55_2193 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DM55_139 putative oxidative stress related two component system, sensor kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D DM55_2192 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D DM55_138 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D DM55_4631 heavy metal sensor kinase family protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D DM55_4630 response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D DM55_2564 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D DM55_2565 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D DM55_4422 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D DM55_1198 his Kinase A domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D DM55_1197 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D DM55_4421 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D DM55_4403 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_4654 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_4351 his Kinase A domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_1702 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D DM55_4349 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_960 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_4696 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_4655 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_4404 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_1673 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_4367 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator D DM55_1701 response regulator K02483 K02483; two-component system, OmpR family, response regulator D DM55_2220 GAF domain protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D DM55_3741 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D DM55_2219 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D DM55_4465 response regulator K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D DM55_2096 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D DM55_2897 bacterial regulatory s, luxR family protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D DM55_493 bacterial regulatory s, luxR family protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D DM55_3742 histidine kinase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D DM55_2215 sensory box protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D DM55_2216 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D DM55_1554 HAMP domain protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D DM55_1555 bacterial regulatory , Fis family protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D DM55_3629 putative c4-dicarboxylate transport sensor kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D DM55_3628 his Kinase A domain protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D DM55_805 AAA domain family protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D DM55_3627 bacterial regulatory , Fis family protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D DM55_3239 his Kinase A domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D DM55_4759 PAS fold family protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D DM55_892 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_899 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_893 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D DM55_3496 cheW-like domain protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D DM55_3495 cheB methylesterase family protein K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D DM55_453 his Kinase A domain protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D DM55_454 bacterial regulatory , Fis family protein K15012 regA; two-component system, response regulator RegA D DM55_4572 NMT1-like family protein K22067 nasS; two-component system, oxyanion-binding sensor D DM55_4573 response regulator K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:bmal02035] D DM55_3026 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D DM55_896 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D DM55_3710 cheC-like family protein K03410 cheC; chemotaxis protein CheC D DM55_894 cheR methyltransferase, all-alpha domain protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D DM55_893 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D DM55_892 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_899 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D DM55_891 cheZ; protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D DM55_4441 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_845 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_932 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3561 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3576 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_2148 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_3025 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D DM55_586 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_895 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_4224 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_3923 tsr; methyl-accepting chemotaxis protein I K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D DM55_1659 sensory box protein K03776 aer; aerotaxis receptor D DM55_482 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D DM55_481 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D DM55_480 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D DM55_1165 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D DM55_1207 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D DM55_1206 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D DM55_1205 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D DM55_885 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D DM55_887 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D DM55_483 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D DM55_1163 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D DM55_1164 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D DM55_484 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D DM55_533 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D DM55_524 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D DM55_532 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D DM55_1162 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D DM55_485 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D DM55_479 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D DM55_526 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D DM55_527 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D DM55_528 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D DM55_530 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D DM55_531 flgF; flagellar basal-body rod protein FlgF K02392 flgG; flagellar basal-body rod protein FlgG D DM55_534 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D DM55_529 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE D DM55_536 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D DM55_537 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D DM55_522 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D DM55_912 hypothetical protein K02406 fliC; flagellin D DM55_913 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D DM55_4151 flagellar hook-associated family protein K02407 fliD; flagellar hook-associated protein 2 D DM55_486 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D DM55_487 flagellar FliT family protein K02423 fliT; flagellar protein FliT D DM55_914 flagellar FliT family protein K02423 fliT; flagellar protein FliT D DM55_904 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D DM55_903 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D DM55_882 RNA polymerase sigma factor, FliA/WhiG family protein K02405 fliA; RNA polymerase sigma factor FliA D DM55_902 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D DM55_900 motB; motility protein B K02557 motB; chemotaxis protein MotB D DM55_2903 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_2325 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D DM55_523 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D DM55_884 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D DM55_883 cobQ/CobB/MinD/ParA nucleotide binding domain protein K04562 flhG; flagellar biosynthesis protein FlhG D DM55_4939 type II/IV secretion system family protein K02669 pilT; twitching motility protein PilT D DM55_1666 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D DM55_727 type II/IV secretion system family protein K02652 pilB; type IV pilus assembly protein PilB D DM55_728 type II secretion system (T2SS), F family protein K02653 pilC; type IV pilus assembly protein PilC D DM55_729 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D DM55_1263 pilQ; type IV pilus secretin PilQ family protein K02666 pilQ; type IV pilus assembly protein PilQ D DM55_2384 putative prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D DM55_2386 hypothetical protein K02655 pilE; type IV pilus assembly protein PilE D DM55_3142 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D DM55_2932 flp/Fap pilin component family protein K02651 flp; pilus assembly protein Flp/PilA D DM55_3141 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D DM55_2933 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D DM55_3139 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D DM55_2934 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D DM55_3138 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D DM55_2935 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D DM55_3137 response regulator K02282 cpaE; pilus assembly protein CpaE D DM55_2937 cobQ/CobB/MinD/ParA nucleotide binding domain protein K02282 cpaE; pilus assembly protein CpaE D DM55_3136 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D DM55_2938 ABC transporter family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D DM55_2952 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D DM55_2887 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D DM55_2890 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D DM55_2888 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2951 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2078 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2092 hypothetical protein K07346 fimC; fimbrial chaperone protein D DM55_2077 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2093 outer membrane usher family protein K07347 fimD; outer membrane usher protein D DM55_2889 hypothetical protein K07347 fimD; outer membrane usher protein D DM55_2094 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2091 fimbrial family protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2079 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2168 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2089 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D DM55_2090 spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:bmal04812] D DM55_1566 cell shape determining , MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D DM55_4354 cell shape determining , MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D DM55_4862 type III secretion target, IpaC/SipC family protein K13286 sipC; invasin C D DM55_739 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DM55_740 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D DM55_2344 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D DM55_2345 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D DM55_2346 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D DM55_981 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DM55_2059 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DM55_3703 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein D DM55_982 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DM55_3702 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:bmal04147] D DM55_2495 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04079 HSP90A; molecular chaperone HtpG D DM55_327 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D DM55_662 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D DM55_1690 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D DM55_1691 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D DM55_301 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D DM55_4055 membrane dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D DM55_2442 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D DM55_1457 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D DM55_86 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D DM55_3660 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D DM55_174 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D DM55_1280 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DM55_1295 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D DM55_1222 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DM55_3510 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D DM55_587 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D DM55_4795 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_1764 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_3125 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D DM55_605 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_73 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_1175 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3164 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_3169 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D DM55_881 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D DM55_385 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D DM55_1095 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D DM55_2076 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DM55_265 D-ala D-ala ligase family protein K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D DM55_561 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D DM55_2400 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D DM55_1799 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D DM55_2794 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D DM55_1640 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D DM55_2214 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_2019 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D DM55_1327 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D DM55_1367 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D DM55_962 pcbd1; pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D DM55_594 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_595 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_1540 putative d-3-phosphoglycerate dehydrogenase oxidoreductase protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D DM55_1428 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D DM55_1868 peptidase M48 family protein K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D DM55_3789 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_2235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_3094 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D DM55_1849 electron transfer flavoFAD-binding domain protein K03522 fixB; electron transfer flavoprotein alpha subunit D DM55_634 glu/Leu/Phe/Val dehydrogenase, dimerization domain protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D DM55_2328 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D DM55_2604 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D DM55_823 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:bmal02048] D DM55_3297 DNA methylase family protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D DM55_1194 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5] D DM55_1195 DNA methylase family protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D DM55_4920 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D DM55_4919 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D DM55_3633 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D DM55_739 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D DM55_1566 cell shape determining , MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D DM55_4354 cell shape determining , MreB/Mrl family protein K03569 mreB; rod shape-determining protein MreB and related proteins D DM55_2254 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D DM55_2253 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D DM55_249 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D DM55_3320 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB D DM55_346 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D DM55_3368 beta-eliminating lyase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:bmal01504] D DM55_3975 acetyltransferase family protein K18816 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82] D DM55_4549 sugar (and other) transporter family protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D DM55_4239 bla; beta-lactamase Toho-1 K17836 penP; beta-lactamase class A [EC:3.5.2.6] D DM55_4631 heavy metal sensor kinase family protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D DM55_4630 response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D DM55_4247 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D DM55_1708 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D DM55_1709 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D DM55_3570 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_4612 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_1710 efflux transporter, outer membrane factor (OMF) lipo, NodT family protein K18139 oprM; outer membrane protein, multidrug efflux system D DM55_2827 acrB/AcrD/AcrF family protein K18303 mexK; multidrug efflux pump D DM55_2948 putative transcriptional regulator domain protein K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D DM55_2949 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D DM55_2950 acrB/AcrD/AcrF family protein K18095 mexY; multidrug efflux pump D DM55_862 outer membrane efflux family protein K12340 tolC; outer membrane protein D DM55_2702 bacterial regulatory helix-turn-helix , lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:bmal00536] D DM55_3331 hypothetical protein K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:bmal00537] D DM55_594 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_595 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D DM55_4387 trehalase family protein K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D DM55_4055 membrane dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:bmal03100] D DM55_1106 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_248 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_1354 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_4128 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_2645 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D DM55_4143 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_1133 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_1781 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_2363 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_2364 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D DM55_1895 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DM55_1896 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D DM55_246 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DM55_90 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D DM55_4302 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DM55_1944 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D DM55_1076 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D DM55_247 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D DM55_2298 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_1942 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_1943 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_1278 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D DM55_129 tRNA-His K14226 tRNA-His; tRNA His D DM55_1355 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DM55_2644 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DM55_4127 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D DM55_2023 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_2606 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_4801 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_3116 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_3114 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_133 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D DM55_2371 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DM55_1537 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D DM55_1676 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_2227 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_2908 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_3400 tRNA-Met K14230 tRNA-Met; tRNA Met D DM55_1556 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D DM55_718 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DM55_3064 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DM55_2770 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D DM55_3992 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_2341 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_2355 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_294 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D DM55_1211 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DM55_1279 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DM55_1797 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D DM55_1281 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D DM55_1276 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D DM55_95 tRNA-Val K14237 tRNA-Val; tRNA Val D DM55_2201 tRNA-Val K14237 tRNA-Val; tRNA Val D DM55_3054 tRNA-Val K14237 tRNA-Val; tRNA Val D DM55_1356 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_2643 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_4126 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D DM55_1352 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DM55_4129 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D DM55_4130 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D DM55_1351 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D DM55_4154 aldo/keto reductase family protein K05882 E1.1.1.91; aryl-alcohol dehydrogenase (NADP+) [EC:1.1.1.91] D DM55_2713 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D DM55_4075 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D DM55_3834 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219] D DM55_3858 short chain dehydrogenase family protein K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320] D DM55_468 aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D DM55_2965 zinc-binding dehydrogenase family protein K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D DM55_3972 zinc-binding dehydrogenase family protein K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D DM55_933 berberine and berberine like family protein K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29] D DM55_4270 membrane bound FAD containing D-sorbitol dehydrogenase family protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14] D DM55_475 aldehyde dehydrogenase family protein K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D DM55_1344 hypothetical protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D DM55_3524 flavin oxidoreductase / NADH oxidase family protein K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D DM55_4560 zinc-binding dehydrogenase family protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D DM55_69 zinc-binding dehydrogenase family protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D DM55_4396 [2Fe-2S] binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D DM55_4395 molybdopterin-binding domain of aldehyde dehydrogenase family protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D DM55_3038 FAD binding domain protein K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D DM55_3766 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D DM55_3867 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D DM55_2558 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D DM55_2603 NAD(P)H quinone oxidoreductase, PIG3 family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D DM55_4108 NADPH-dependent FMN reductase family protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D DM55_3996 pyridine nucleotide-disulfide oxidoreductase family protein K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D DM55_1750 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D DM55_78 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D DM55_1438 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D DM55_3007 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D DM55_1439 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D DM55_1273 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D DM55_2102 cytochrome c family protein K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D DM55_4815 cytochrome c family protein K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D DM55_33 redoxin family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D DM55_697 ahpC/TSA family protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D DM55_2390 hypothetical protein K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D DM55_3997 ahpC; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D DM55_3431 peroxiredoxin, Ohr subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D DM55_141 alkylhydroperoxidase AhpD family core domain protein K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D DM55_140 redoxin family protein K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D DM55_3485 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D DM55_2189 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D DM55_4844 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D DM55_1947 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D DM55_1369 hmp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D DM55_2980 FAD-NAD(P)-binding family protein K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D DM55_4402 FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D DM55_259 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D DM55_495 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D DM55_3704 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D DM55_2291 met-10+ like-family protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D DM55_3201 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D DM55_1752 methyltransferase domain protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D DM55_3806 carbamoyltransferase family protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D DM55_3103 carbamoyltransferase family protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D DM55_4207 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D DM55_1621 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D DM55_82 acetyltransferase family protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D DM55_2906 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D DM55_2905 hypothetical protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D DM55_3817 glycosyl transferases group 1 family protein K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D DM55_2723 mdcB; triphosphoribosyl-dephospho-CoA synthase MdcB K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D DM55_3713 hpnD; squalene synthase HpnD K21678 hpnD; presqualene diphosphate synthase [EC:2.5.1.103] D DM55_2041 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D DM55_4660 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D DM55_2869 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D DM55_187 kinase/pyrophosphorylase family protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D DM55_1449 glutamate-ammonia ligase adenylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D DM55_2722 mdcG; malonate decarboxylase holo-[acyl-carrier-protein] synthase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66] D DM55_77 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D DM55_3347 tyrosine kinase family protein K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1] D DM55_607 isocitrate dehydrogenase kinase/phosphatase family protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D DM55_1084 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D DM55_828 macro domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D DM55_4076 hypothetical protein K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33] D DM55_3040 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D DM55_2123 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D DM55_2378 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D DM55_320 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D DM55_2771 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D DM55_4067 betC; choline-sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D DM55_60 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D DM55_332 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D DM55_4916 glycosyl hydrolases 8 family protein K20542 bcsZ; endoglucanase [EC:3.2.1.4] D DM55_3464 N-acetylmuramoyl-L-alanine amidase family protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DM55_4689 N-acetylmuramoyl-L-alanine amidase family protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D DM55_1582 amidohydrolase family protein K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D DM55_1548 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D DM55_209 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D DM55_1447 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D DM55_4110 CYTH domain protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D DM55_1914 maf; septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D DM55_3762 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D DM55_2720 mdcD; malonate decarboxylase, beta subunit K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87] D DM55_2721 mdcE; malonate decarboxylase, gamma subunit K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87] D DM55_85 hydroxyethylthiazole kinase family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D DM55_2307 pyridoxal-phosphate dependent enzyme family protein K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D DM55_4781 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D DM55_1001 AMP-binding enzyme family protein K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34] D DM55_418 bacteriocin biosynthesis cyclodehydratase domain protein K24411 patD; oxazoline/thiazoline synthase [EC:6.2.2.2 6.2.2.3] D DM55_689 mpl; L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D DM55_2512 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D DM55_565 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D DM55_1010 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D DM55_4266 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D DM55_351 cysteine-rich domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D DM55_350 4Fe-4S binding domain protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D DM55_1899 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D DM55_1604 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D DM55_341 fdx; ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D DM55_261 fdxA; ferredoxin-1 K05524 fdxA; ferredoxin D DM55_1897 4Fe-4S binding domain protein K05524 fdxA; ferredoxin D DM55_345 iscU; FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D DM55_1983 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D DM55_4389 cytochrome c oxidase subunit III family protein K02164 norE; nitric oxide reductase NorE protein D DM55_1848 electron transfer flavodomain protein K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism D DM55_476 hypothetical protein K09456 aidB; putative acyl-CoA dehydrogenase D DM55_1002 hypothetical protein K09456 aidB; putative acyl-CoA dehydrogenase D DM55_4303 fabD; malonyl CoA-acyl carrier protein transacylase K15355 K15355; malonyl CoA-acyl carrier protein transacylase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D DM55_1519 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K08234 yaeR; glyoxylase I family protein D DM55_1375 hypothetical protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D DM55_1835 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A D DM55_1836 tetratricopeptide repeat family protein K19804 lapB; lipopolysaccharide assembly protein B D DM55_548 membrane family protein K07027 K07027; glycosyltransferase 2 family protein D DM55_4917 bacterial cellulose synthase subunit K20541 bcsB; cellulose synthase operon protein B C 99987 Cofactor metabolism D DM55_2987 cobW; cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D DM55_2175 tetratricopeptide repeat family protein K02498 hemY; HemY protein D DM55_1592 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D DM55_1591 SCP-2 sterol transfer family protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D DM55_811 membrane fusogenic activity family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D DM55_1996 SCP-2 sterol transfer family protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D DM55_2990 von Willebrand factor type A domain protein K13580 K13580; magnesium chelatase subunit ChlD-like protein C 99988 Secondary metabolism D DM55_3707 NADPH-dependent FMN reductase family protein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D DM55_2058 doxX family protein K15977 K15977; putative oxidoreductase D DM55_4273 SURF4 family protein K15977 K15977; putative oxidoreductase D DM55_2991 phospholipase/Carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D DM55_382 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D DM55_1138 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D DM55_4457 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D DM55_812 nitrogen regulatory P-II family protein K04752 glnK; nitrogen regulatory protein P-II 2 D DM55_3177 S1 RNA binding domain protein K06959 tex; protein Tex C 99974 Translation D DM55_3573 ccmA; heme ABC exporter, ATP-binding protein CcmA K13926 rbbA; ribosome-dependent ATPase D DM55_3547 metallo-beta-lactamase superfamily protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D DM55_379 ATP-dependent Clp protease adaptor ClpS family protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D DM55_99 tig; trigger factor K03545 tig; trigger factor D DM55_1272 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D DM55_3257 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D DM55_2279 hypothetical protein K03187 ureE; urease accessory protein D DM55_2278 ureF family protein K03188 ureF; urease accessory protein D DM55_2277 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D DM55_2283 ureD urease accessory family protein K03190 ureD; urease accessory protein D DM55_181 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D DM55_810 AAA domain family protein K07391 comM; magnesium chelatase family protein D DM55_4256 2OG-Fe(II) oxygenase superfamily protein K07394 K07394; SM-20-related protein D DM55_4153 putative dSBA oxidoreductase K07396 K07396; putative protein-disulfide isomerase D DM55_3483 osmC-like family protein K07397 yhfA; putative redox protein D DM55_620 osmC-like family protein K07397 yhfA; putative redox protein D DM55_1330 resB-like family protein K07399 resB; cytochrome c biogenesis protein D DM55_491 xdhC and CoxI family protein K07402 xdhC; xanthine dehydrogenase accessory factor D DM55_1808 xdhC; xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D DM55_358 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D DM55_1902 rmuC family protein K09760 rmuC; DNA recombination protein RmuC D DM55_1110 hypothetical protein K07460 yraN; putative endonuclease D DM55_2180 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease D DM55_1544 DNA recombination-mediator A family protein K04096 smf; DNA processing protein D DM55_1547 DNA recombination-mediator A family protein K04096 smf; DNA processing protein D DM55_2338 sigma-54 interaction domain protein K07478 ycaJ; putative ATPase D DM55_3198 DNA polymerase family B, exonuclease domain protein K07501 K07501; 3'-5' exonuclease D DM55_2164 transposase family protein K07483 K07483; transposase D DM55_130 transposase family protein K07485 K07485; transposase D DM55_1017 transposase family protein K07485 K07485; transposase D DM55_3540 transposase family protein K07485 K07485; transposase D DM55_1335 transposase family protein K07485 K07485; transposase D DM55_164 transposase family protein K07485 K07485; transposase D DM55_2508 transposase family protein K07485 K07485; transposase D DM55_2886 transposase family protein K07485 K07485; transposase D DM55_293 transposase family protein K07485 K07485; transposase D DM55_3740 transposase family protein K07485 K07485; transposase D DM55_4484 transposase family protein K07485 K07485; transposase D DM55_1536 transposase family protein K07485 K07485; transposase D DM55_443 transposase family protein K07485 K07485; transposase D DM55_1798 transposase family protein K07485 K07485; transposase D DM55_3862 transposase family protein K07485 K07485; transposase D DM55_4300 transposase family protein K07485 K07485; transposase D DM55_2367 helix-turn-helix domain of transposase ISL3 family protein K07485 K07485; transposase D DM55_1253 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D DM55_3078 hypothetical protein K07492 K07492; putative transposase D DM55_940 integrase core domain protein K07497 K07497; putative transposase D DM55_2728 integrase core domain protein K07497 K07497; putative transposase D DM55_2690 integrase core domain protein K07497 K07497; putative transposase D DM55_3543 integrase core domain protein K07497 K07497; putative transposase D DM55_2165 HTH-like domain protein K07497 K07497; putative transposase D DM55_3037 integrase core domain protein K07497 K07497; putative transposase D DM55_2955 transposase family protein K07497 K07497; putative transposase D DM55_4453 transposase family protein K07497 K07497; putative transposase D DM55_2370 transposase family protein K07497 K07497; putative transposase D DM55_1137 transposase family protein K07497 K07497; putative transposase D DM55_132 transposase family protein K07497 K07497; putative transposase D DM55_1332 transposase family protein K07497 K07497; putative transposase D DM55_1350 transposase family protein K07497 K07497; putative transposase D DM55_1517 transposase family protein K07497 K07497; putative transposase D DM55_1715 transposase family protein K07497 K07497; putative transposase D DM55_1822 transposase family protein K07497 K07497; putative transposase D DM55_1960 transposase family protein K07497 K07497; putative transposase D DM55_2021 transposase family protein K07497 K07497; putative transposase D DM55_2114 transposase family protein K07497 K07497; putative transposase D DM55_2167 transposase family protein K07497 K07497; putative transposase D DM55_2198 transposase family protein K07497 K07497; putative transposase D DM55_2267 transposase family protein K07497 K07497; putative transposase D DM55_2469 transposase family protein K07497 K07497; putative transposase D DM55_2490 transposase family protein K07497 K07497; putative transposase D DM55_2594 transposase family protein K07497 K07497; putative transposase D DM55_2668 transposase family protein K07497 K07497; putative transposase D DM55_2692 transposase family protein K07497 K07497; putative transposase D DM55_2824 transposase family protein K07497 K07497; putative transposase D DM55_2901 transposase family protein K07497 K07497; putative transposase D DM55_3102 transposase family protein K07497 K07497; putative transposase D DM55_3316 transposase family protein K07497 K07497; putative transposase D DM55_3334 transposase family protein K07497 K07497; putative transposase D DM55_3456 transposase family protein K07497 K07497; putative transposase D DM55_3603 transposase family protein K07497 K07497; putative transposase D DM55_3661 transposase family protein K07497 K07497; putative transposase D DM55_375 transposase family protein K07497 K07497; putative transposase D DM55_403 transposase family protein K07497 K07497; putative transposase D DM55_4080 transposase family protein K07497 K07497; putative transposase D DM55_4212 transposase family protein K07497 K07497; putative transposase D DM55_4287 transposase family protein K07497 K07497; putative transposase D DM55_4346 transposase family protein K07497 K07497; putative transposase D DM55_4383 transposase family protein K07497 K07497; putative transposase D DM55_4472 transposase family protein K07497 K07497; putative transposase D DM55_4633 transposase family protein K07497 K07497; putative transposase D DM55_4779 transposase family protein K07497 K07497; putative transposase D DM55_4847 transposase family protein K07497 K07497; putative transposase D DM55_723 transposase family protein K07497 K07497; putative transposase D DM55_937 transposase family protein K07497 K07497; putative transposase D DM55_2781 transposase family protein K07497 K07497; putative transposase D DM55_1104 integrase core domain protein K07497 K07497; putative transposase D DM55_1208 integrase core domain protein K07497 K07497; putative transposase D DM55_1501 integrase core domain protein K07497 K07497; putative transposase D DM55_1888 integrase core domain protein K07497 K07497; putative transposase D DM55_2022 integrase core domain protein K07497 K07497; putative transposase D DM55_2080 integrase core domain protein K07497 K07497; putative transposase D DM55_2115 integrase core domain protein K07497 K07497; putative transposase D DM55_2245 integrase core domain protein K07497 K07497; putative transposase D DM55_2266 integrase core domain protein K07497 K07497; putative transposase D DM55_2468 integrase core domain protein K07497 K07497; putative transposase D DM55_2489 integrase core domain protein K07497 K07497; putative transposase D DM55_2595 integrase core domain protein K07497 K07497; putative transposase D DM55_2823 integrase core domain protein K07497 K07497; putative transposase D DM55_2923 integrase core domain protein K07497 K07497; putative transposase D DM55_3143 integrase core domain protein K07497 K07497; putative transposase D DM55_3317 integrase core domain protein K07497 K07497; putative transposase D DM55_3604 integrase core domain protein K07497 K07497; putative transposase D DM55_3662 integrase core domain protein K07497 K07497; putative transposase D DM55_376 integrase core domain protein K07497 K07497; putative transposase D DM55_3994 integrase core domain protein K07497 K07497; putative transposase D DM55_4081 integrase core domain protein K07497 K07497; putative transposase D DM55_4131 integrase core domain protein K07497 K07497; putative transposase D DM55_4211 integrase core domain protein K07497 K07497; putative transposase D DM55_4286 integrase core domain protein K07497 K07497; putative transposase D DM55_4382 integrase core domain protein K07497 K07497; putative transposase D DM55_4424 integrase core domain protein K07497 K07497; putative transposase D DM55_4452 integrase core domain protein K07497 K07497; putative transposase D DM55_4717 integrase core domain protein K07497 K07497; putative transposase D DM55_4780 integrase core domain protein K07497 K07497; putative transposase D DM55_49 integrase core domain protein K07497 K07497; putative transposase D DM55_722 integrase core domain protein K07497 K07497; putative transposase D DM55_47 transposase family protein K07497 K07497; putative transposase D DM55_48 integrase core domain protein K07497 K07497; putative transposase D DM55_50 transposase family protein K07497 K07497; putative transposase D DM55_3455 integrase core domain protein K07497 K07497; putative transposase D DM55_108 integrase core domain protein K07497 K07497; putative transposase D DM55_109 transposase family protein K07497 K07497; putative transposase D DM55_131 integrase core domain protein K07497 K07497; putative transposase D DM55_1779 transposase family protein K07497 K07497; putative transposase D DM55_1780 integrase core domain protein K07497 K07497; putative transposase D DM55_1783 integrase core domain protein K07497 K07497; putative transposase D DM55_1784 integrase core domain protein K07497 K07497; putative transposase D DM55_1785 integrase core domain protein K07497 K07497; putative transposase D DM55_1786 transposase family protein K07497 K07497; putative transposase D DM55_1821 integrase core domain protein K07497 K07497; putative transposase D DM55_2669 integrase core domain protein K07497 K07497; putative transposase D DM55_4344 integrase core domain protein K07497 K07497; putative transposase D DM55_188 integrase core domain protein K07497 K07497; putative transposase D DM55_189 transposase family protein K07497 K07497; putative transposase D DM55_2691 HTH-like domain protein K07497 K07497; putative transposase D DM55_3541 transposase family protein K07497 K07497; putative transposase D DM55_3542 integrase core domain protein K07497 K07497; putative transposase D DM55_234 transposase family protein K07497 K07497; putative transposase D DM55_235 integrase core domain protein K07497 K07497; putative transposase D DM55_1889 transposase family protein K07497 K07497; putative transposase D DM55_2731 transposase family protein K07497 K07497; putative transposase D DM55_3619 integrase core domain protein K07497 K07497; putative transposase D DM55_3620 transposase family protein K07497 K07497; putative transposase D DM55_4425 transposase family protein K07497 K07497; putative transposase D DM55_4473 integrase core domain protein K07497 K07497; putative transposase D DM55_1103 transposase family protein K07497 K07497; putative transposase D DM55_1961 integrase core domain protein K07497 K07497; putative transposase D DM55_1167 transposase family protein K07497 K07497; putative transposase D DM55_1168 integrase core domain protein K07497 K07497; putative transposase D DM55_4544 transposase family protein K07497 K07497; putative transposase D DM55_4545 integrase core domain protein K07497 K07497; putative transposase D DM55_380 integrase core domain protein K07497 K07497; putative transposase D DM55_381 transposase family protein K07497 K07497; putative transposase D DM55_392 transposase family protein K07497 K07497; putative transposase D DM55_393 integrase core domain protein K07497 K07497; putative transposase D DM55_1209 transposase family protein K07497 K07497; putative transposase D DM55_2081 transposase family protein K07497 K07497; putative transposase D DM55_2899 integrase core domain protein K07497 K07497; putative transposase D DM55_2922 hypothetical protein K07497 K07497; putative transposase D DM55_4603 transposase family protein K07497 K07497; putative transposase D DM55_4604 integrase core domain protein K07497 K07497; putative transposase D DM55_4634 integrase core domain protein K07497 K07497; putative transposase D DM55_404 integrase core domain protein K07497 K07497; putative transposase D DM55_1274 integrase core domain protein K07497 K07497; putative transposase D DM55_1275 transposase family protein K07497 K07497; putative transposase D DM55_1333 integrase core domain protein K07497 K07497; putative transposase D DM55_2166 integrase core domain protein K07497 K07497; putative transposase D DM55_2197 integrase core domain protein K07497 K07497; putative transposase D DM55_3035 transposase family protein K07497 K07497; putative transposase D DM55_3036 integrase core domain protein K07497 K07497; putative transposase D DM55_3845 integrase core domain protein K07497 K07497; putative transposase D DM55_3846 transposase family protein K07497 K07497; putative transposase D DM55_4716 transposase family protein K07497 K07497; putative transposase D DM55_550 integrase core domain protein K07497 K07497; putative transposase D DM55_551 transposase family protein K07497 K07497; putative transposase D DM55_2244 transposase family protein K07497 K07497; putative transposase D DM55_3069 integrase core domain protein K07497 K07497; putative transposase D DM55_3070 transposase family protein K07497 K07497; putative transposase D DM55_590 transposase family protein K07497 K07497; putative transposase D DM55_591 integrase core domain protein K07497 K07497; putative transposase D DM55_3101 integrase core domain protein K07497 K07497; putative transposase D DM55_3105 integrase core domain protein K07497 K07497; putative transposase D DM55_3108 integrase core domain protein K07497 K07497; putative transposase D DM55_3109 transposase family protein K07497 K07497; putative transposase D DM55_3144 transposase family protein K07497 K07497; putative transposase D DM55_3995 transposase family protein K07497 K07497; putative transposase D DM55_4838 integrase core domain protein K07497 K07497; putative transposase D DM55_4839 transposase family protein K07497 K07497; putative transposase D DM55_4848 integrase core domain protein K07497 K07497; putative transposase D DM55_1500 transposase family protein K07497 K07497; putative transposase D DM55_1516 integrase core domain protein K07497 K07497; putative transposase D DM55_1534 integrase core domain protein K07497 K07497; putative transposase D DM55_1535 transposase family protein K07497 K07497; putative transposase D DM55_1545 transposase family protein K07497 K07497; putative transposase D DM55_1546 integrase core domain protein K07497 K07497; putative transposase D DM55_2369 integrase core domain protein K07497 K07497; putative transposase D DM55_3226 integrase core domain protein K07497 K07497; putative transposase D DM55_3227 transposase family protein K07497 K07497; putative transposase D DM55_721 integrase core domain protein K07497 K07497; putative transposase D DM55_4132 transposase family protein K07497 K07497; putative transposase D DM55_4142 integrase core domain protein K07497 K07497; putative transposase D DM55_4145 integrase core domain protein K07497 K07497; putative transposase D DM55_4146 transposase family protein K07497 K07497; putative transposase D DM55_791 transposase family protein K07497 K07497; putative transposase D DM55_1660 transposase family protein K07497 K07497; putative transposase D DM55_3335 integrase core domain protein K07497 K07497; putative transposase D DM55_874 integrase core domain protein K07497 K07497; putative transposase D DM55_875 transposase family protein K07497 K07497; putative transposase D DM55_1678 integrase core domain protein K07497 K07497; putative transposase D DM55_1679 transposase family protein K07497 K07497; putative transposase D DM55_1712 integrase core domain protein K07497 K07497; putative transposase D DM55_1714 integrase core domain protein K07497 K07497; putative transposase D DM55_1661 integrase core domain protein K07497 K07497; putative transposase D DM55_3397 integrase core domain protein K07497 K07497; putative transposase D DM55_3993 integrase core domain protein K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D DM55_150 pspA/IM30 family protein K03969 pspA; phage shock protein A D DM55_2 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D DM55_4826 gram-negative porin family protein K03285 TC.GBP; general bacterial porin, GBP family D DM55_4723 amino acid permease family protein K03293 TC.AAT; amino acid transporter, AAT family D DM55_1105 amino acid permease family protein K03293 TC.AAT; amino acid transporter, AAT family D DM55_492 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D DM55_287 MMPL family protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D DM55_3392 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D DM55_36 phosphate transporter family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D DM55_4899 phosphate transporter family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D DM55_2500 putative membrane protein K03307 TC.SSS; solute:Na+ symporter, SSS family D DM55_1250 agcS; amino acid carrier family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D DM55_162 permease for cytosine/purine, uracil, thiamine, allantoin family protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D DM55_3599 nucleoside transporter, NupC family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D DM55_2272 polysaccharide biosynthesis family protein K03328 TC.PST; polysaccharide transporter, PST family D DM55_421 polysaccharide biosynthesis family protein K03328 TC.PST; polysaccharide transporter, PST family C 99978 Cell growth D DM55_79 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein D DM55_2926 spoVR like family protein K06415 spoVR; stage V sporulation protein R C 99993 Cell motility D DM55_4375 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D DM55_3091 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D DM55_4318 CBS domain protein K07168 K07168; CBS domain-containing membrane protein D DM55_3354 FHA domain protein K07169 K07169; FHA domain-containing protein D DM55_1625 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D DM55_34 phoH-like family protein K07175 phoH2; PhoH-like ATPase D DM55_2924 hypothetical protein K07180 prkA; serine protein kinase D DM55_1767 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D DM55_2337 lolA; outer membrane lipocarrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D DM55_1078 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D DM55_1240 vacJ like lipofamily protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D DM55_3722 vacJ like lipofamily protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D DM55_699 glycine zipper 2TM domain protein K06077 slyB; outer membrane lipoprotein SlyB D DM55_196 outer membrane family protein K06142 hlpA; outer membrane protein D DM55_3200 lysM domain protein K06194 nlpD; lipoprotein NlpD D DM55_4238 lysM domain protein K06194 nlpD; lipoprotein NlpD D DM55_2779 lysM domain protein K12943 ygeR; lipoprotein YgeR D DM55_1492 capsule polysaccharide biosynthesis family protein K07265 kpsS; capsular polysaccharide export protein D DM55_1474 capsule polysaccharide biosynthesis family protein K07266 kpsC; capsular polysaccharide export protein D DM55_1336 ompW family protein K07275 ompW; outer membrane protein D DM55_1254 ompW family protein K07275 ompW; outer membrane protein D DM55_3152 ompW family protein K07275 ompW; outer membrane protein D DM55_2435 ompW family protein K07275 ompW; outer membrane protein D DM55_3157 asmA family protein K07290 yhjG; AsmA family protein D DM55_3564 hlyD secretion family protein K02005 ABC.CD.TX; HlyD family secretion protein D DM55_2109 glycine zipper 2TM domain protein K04062 osmB; osmotically inducible lipoprotein OsmB D DM55_2667 glycine zipper 2TM domain protein K04062 osmB; osmotically inducible lipoprotein OsmB D DM55_4434 smpA / OmlA family protein K04064 osmE; osmotically inducible lipoprotein OsmE D DM55_3192 helix-turn-helix domain protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D DM55_2757 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D DM55_3982 BFD-like [2Fe-2S] binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin D DM55_1325 cutA1 divalent ion tolerance family protein K03926 cutA; periplasmic divalent cation tolerance protein D DM55_597 cutC family protein K06201 cutC; copper homeostasis protein D DM55_1383 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D DM55_4117 apaG; protein ApaG K06195 apaG; ApaG protein D DM55_1269 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D DM55_2867 nosD; nitrous oxide reductase maturation NosD family protein K07218 nosD; nitrous oxidase accessory protein D DM55_3956 hemin-degrading HemS.ChuX domain protein K07225 hmuS; putative hemin transport protein D DM55_1988 nnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D DM55_2864 nosL family protein K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D DM55_3292 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production D DM55_1410 mce related family protein K06192 pqiB; paraquat-inducible protein B D DM55_1948 acetyltransferase family protein K02348 elaA; ElaA protein D DM55_2422 BON domain protein K04065 osmY; hyperosmotically inducible periplasmic protein D DM55_2571 bacterial-like globin family protein K06886 glbN; hemoglobin D DM55_18 bacterial-like globin family protein K06886 glbN; hemoglobin D DM55_4352 surface antigen variable number repeat family protein K07001 K07001; NTE family protein D DM55_3683 patatin-like phospholipase family protein K07001 K07001; NTE family protein D DM55_250 patatin-like phospholipase family protein K07001 K07001; NTE family protein D DM55_765 patatin-like phospholipase family protein K07001 K07001; NTE family protein D DM55_1441 iron-sulfur cluster assembly accessory family protein K15724 erpA; iron-sulfur cluster insertion protein D DM55_1987 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D DM55_1985 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D DM55_2159 yihY; YihY family inner membrane domain protein K07058 K07058; membrane protein D DM55_3274 yihY; YihY family inner membrane domain protein K07058 K07058; membrane protein D DM55_2525 rhodanese-like domain protein K07146 K07146; UPF0176 protein D DM55_4361 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K04750 phnB; PhnB protein D DM55_2501 3-demethylubiquinone-9 3-methyltransferase family protein K04750 phnB; PhnB protein D DM55_4133 hypothetical protein K11477 glcG; glc operon protein GlcG D DM55_2974 fhuF; siderophore-iron reductase FhuF K13255 fhuF; ferric iron reductase protein FhuF D DM55_1949 cytochrome c oxidase caa3 assembly factor family protein K02351 K02351; putative membrane protein D DM55_566 lemA family protein K03744 lemA; LemA protein D DM55_1894 creA family protein K05805 creA; CreA protein D DM55_3293 sporulation related domain protein K03749 dedD; DedD protein D DM55_1470 hypothetical protein K03975 dedA; membrane-associated protein D DM55_1408 paraquat-inducible A family protein K03808 pqiA; paraquat-inducible protein A D DM55_1409 paraquat-inducible A family protein K03808 pqiA; paraquat-inducible protein A D DM55_880 hypothetical protein K08972 K08972; putative membrane protein D DM55_1957 hypothetical protein K08983 K08983; putative membrane protein D DM55_3823 hypothetical protein K08995 K08995; putative membrane protein D DM55_3638 hypothetical protein K08995 K08995; putative membrane protein D DM55_603 putative protein YchJ K09858 K09858; SEC-C motif domain protein D DM55_543 phnA Zinc-Ribbon family protein K06193 phnA; protein PhnA C 99997 Function unknown D DM55_59 ankyrin repeat family protein K06867 K06867; uncharacterized protein D DM55_567 TLP18.3, Psb32 and MOLO-1 founding s of phosphatase family protein K06872 K06872; uncharacterized protein D DM55_3343 hypothetical protein K06887 K06887; uncharacterized protein D DM55_1185 hypothetical protein K06893 K06893; uncharacterized protein D DM55_733 ATPase associated with various cellular activities family protein K06923 K06923; uncharacterized protein D DM55_994 coA binding domain protein K06929 K06929; uncharacterized protein D DM55_3151 hypothetical protein K06938 K06938; uncharacterized protein D DM55_2294 putative zinc-/iron-chelating domain protein K06940 K06940; uncharacterized protein D DM55_705 hypothetical protein K06950 K06950; uncharacterized protein D DM55_3272 succinylglutamate desuccinylase / Aspartoacylase family protein K06987 K06987; uncharacterized protein D DM55_4803 cupin domain protein K06995 K06995; uncharacterized protein D DM55_1415 glyoxalase-like domain protein K06996 K06996; uncharacterized protein D DM55_688 alpha/beta hydrolase family protein K07000 K07000; uncharacterized protein D DM55_3723 MMPL family protein K07003 K07003; uncharacterized protein D DM55_3469 endonuclease/Exonuclease/phosphatase family protein K07004 K07004; uncharacterized protein D DM55_4437 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D DM55_780 prolyl oligopeptidase family protein K07018 K07018; uncharacterized protein D DM55_1683 alpha/beta hydrolase fold family protein K07019 K07019; uncharacterized protein D DM55_3776 zeta toxin family protein K07028 K07028; uncharacterized protein D DM55_4718 putative metal-dependent hydrolase family protein K07044 K07044; uncharacterized protein D DM55_3546 putative metal-dependent hydrolase family protein K07044 K07044; uncharacterized protein D DM55_4597 putative metal-dependent hydrolase family protein K07044 K07044; uncharacterized protein D DM55_4215 putative metal-dependent hydrolase family protein K07044 K07044; uncharacterized protein D DM55_123 putative permease family protein K07089 K07089; uncharacterized protein D DM55_2425 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D DM55_2647 hypothetical protein K07093 K07093; uncharacterized protein D DM55_4179 calcineurin-like phosphoesterase family protein K07098 K07098; uncharacterized protein D DM55_3179 phosphoribosyl transferase domain protein K07101 K07101; uncharacterized protein D DM55_4492 sulfur transport family protein K07112 K07112; uncharacterized protein D DM55_4493 sulfur transport family protein K07112 K07112; uncharacterized protein D DM55_958 SET domain protein K07117 K07117; uncharacterized protein D DM55_2650 NAD dependent epimerase/dehydratase family protein K07118 K07118; uncharacterized protein D DM55_4423 MOSC domain protein K07140 K07140; MOSC domain-containing protein D DM55_1082 ATP-dependent protease La domain protein K07157 K07157; uncharacterized protein D DM55_397 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D DM55_1502 hypothetical protein K09005 K09005; uncharacterized protein D DM55_3403 yqey-like family protein K09117 K09117; uncharacterized protein D DM55_4623 hypothetical protein K09129 K09129; uncharacterized protein D DM55_783 hypothetical protein K09158 K09158; uncharacterized protein D DM55_2566 hypothetical protein K09712 K09712; uncharacterized protein D DM55_2855 YCII-related domain protein K09780 K09780; uncharacterized protein D DM55_2925 hypothetical protein K09786 K09786; uncharacterized protein D DM55_387 hypothetical protein K09791 K09791; uncharacterized protein D DM55_179 rnfH Ubiquitin family protein K09801 K09801; uncharacterized protein D DM55_1411 hypothetical protein K09857 K09857; uncharacterized protein D DM55_2637 hypothetical protein K09861 K09861; uncharacterized protein D DM55_2181 acetyltransferase domain protein K09919 K09919; uncharacterized protein D DM55_461 hypothetical protein K09921 K09921; uncharacterized protein D DM55_1827 hypothetical protein K09924 K09924; uncharacterized protein D DM55_4385 winged helix DNA-binding domain protein K09927 K09927; uncharacterized protein D DM55_3673 xylose isomerase-like TIM barrel family protein K09930 K09930; uncharacterized protein D DM55_3182 hypothetical protein K09937 K09937; uncharacterized protein D DM55_490 pepSY-associated TM helix family protein K09939 K09939; uncharacterized protein D DM55_852 hypothetical protein K09941 K09941; uncharacterized protein D DM55_4208 glycolipid-binding family protein K09957 K09957; uncharacterized protein D DM55_3690 hypothetical protein K09958 K09958; uncharacterized protein D DM55_2701 hypothetical protein K09965 K09965; uncharacterized protein D DM55_509 traB family protein K09973 K09973; uncharacterized protein D DM55_2014 hutD family protein K09975 K09975; uncharacterized protein D DM55_227 hypothetical protein K09977 K09977; uncharacterized protein D DM55_168 hypothetical protein K09983 K09983; uncharacterized protein D DM55_2976 hypothetical protein K09983 K09983; uncharacterized protein D DM55_2504 VWA domain containing CoxE-like family protein K09989 K09989; uncharacterized protein D DM55_4900 2OG-Fe(II) oxygenase superfamily protein K09990 K09990; uncharacterized protein D DM55_37 hypothetical protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 29, 2024