+E Transcription factors KO
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Transcription Factors - Burkholderia mallei BMQ
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D DM76_1095 helix-turn-helix domain protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D DM76_2392 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D DM76_1498 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DM76_3322 helix-turn-helix domain protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D DM76_4769 helix-turn-helix domain protein K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D DM76_1939 argR; transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D DM76_4750 helix-turn-helix domain protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D DM76_520 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DM76_4940 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DM76_765 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DM76_4058 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DM76_4069 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DM76_4655 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DM76_3483 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D DM76_1774 bacterial regulatory helix-turn-helix , lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D DM76_1374 bacterial regulatory helix-turn-helix , lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DM76_4645 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DM76_4364 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DM76_639 cynR; HTH-type transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D DM76_1999 bacterial regulatory helix-turn-helix , lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D DM76_90 bacterial regulatory helix-turn-helix , lysR family protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D DM76_4548 bacterial regulatory helix-turn-helix , lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D DM76_4383 dmlR; HTH-type transcriptional regulator DmlR K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D DM76_2686 bacterial regulatory helix-turn-helix , lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D DM76_616 bacterial regulatory helix-turn-helix , lysR family protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D DM76_3399 bacterial regulatory helix-turn-helix , lysR family protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D DM76_4213 bacterial regulatory helix-turn-helix , lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D DM76_4226 benM; HTH-type transcriptional regulator BenM K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D DM76_1622 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DM76_3622 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D DM76_4748 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DM76_2823 periplasmic binding s and sugar binding domain of LacI family protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
C GntR family
D DM76_1365 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D DM76_1987 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D DM76_1484 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DM76_1004 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DM76_3452 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D DM76_4023 gntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DM76_638 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DM76_2770 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DM76_3386 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DM76_4703 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DM76_2680 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D DM76_3421 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D DM76_1685 ttgR; HTH-type transcriptional regulator ttgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DM76_430 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator
D DM76_3378 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DM76_240 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DM76_2931 putative transcriptional regulator domain protein K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
C Lrp/AsnC family
D DM76_1828 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_1342 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_3851 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_921 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_939 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_4009 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_1725 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_2681 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_3721 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_4903 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DM76_2637 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D DM76_4877 sigma-70, region 4 family protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D DM76_3856 bacterial regulatory s, luxR family protein K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
D DM76_4465 bacterial regulatory s, luxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D DM76_4127 ohrR; transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D DM76_3193 merR regulatory family protein K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D DM76_633 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DM76_1700 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D DM76_2631 iclR helix-turn-helix domain protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
C CRP/FNR family
D DM76_1492 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DM76_4245 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DM76_4363 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DM76_1967 cyclic nucleotide-binding domain protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D DM76_326 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D DM76_1955 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D DM76_3204 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
C XRE family
C PadR family
D DM76_1157 transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator
C Other families
D DM76_623 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DM76_752 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DM76_1404 bacterial regulatory , Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DM76_4609 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D DM76_3873 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D DM76_4135 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D DM76_974 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D DM76_2844 4Fe-4S binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D DM76_59 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DM76_957 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DM76_4397 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DM76_1430 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D DM76_1154 paaX-like family protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D DM76_4870 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D DM76_2433 phosphoribosyl transferase domain protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D DM76_2679 putative FMN-binding domain protein K07734 paiB; transcriptional regulator
D DM76_2431 hypothetical protein K07735 algH; putative transcriptional regulator
D DM76_438 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DM76_2366 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D DM76_734 mraZ family protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0