+D GENES KO
#
KEGG Orthology (KO) - Brevundimonas mediterranea
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:bmed00010]
D GYM46_05165 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D GYM46_07685 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM46_12800 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM46_03945 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM46_14905 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM46_03930 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM46_03940 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GYM46_04695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GYM46_16345 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM46_12645 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM46_12425 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D GYM46_16335 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM46_16330 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM46_16325 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D GYM46_00700 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM46_11285 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM46_00705 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM46_16590 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:bmed00020]
D GYM46_05890 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GYM46_14855 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GYM46_09485 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D GYM46_08460 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM46_06450 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D GYM46_06445 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_06455 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM46_06475 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM46_15165 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D GYM46_08405 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM46_08400 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM46_08415 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM46_08410 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GYM46_16250 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM46_16335 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM46_16330 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM46_16325 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:bmed00030]
D GYM46_07685 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM46_05150 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GYM46_05155 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D GYM46_07155 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GYM46_03625 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM46_08275 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D GYM46_15880 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D GYM46_05375 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_02945 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D GYM46_05160 phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D GYM46_04535 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D GYM46_04400 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D GYM46_16595 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_00585 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_03945 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM46_12800 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:bmed00040]
D GYM46_12365 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM46_09980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GYM46_07155 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GYM46_01970 SDR family oxidoreductase K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175]
D GYM46_01945 SMP-30/gluconolactonase/LRE family protein K14274 xylC; xylono-1,5-lactonase [EC:3.1.1.110]
D GYM46_01975 dihydroxy-acid dehydratase family protein K22186 xylD; xylonate dehydratase [EC:4.2.1.82]
C 00051 Fructose and mannose metabolism [PATH:bmed00051]
D GYM46_02630 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_07750 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D GYM46_12800 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM46_03945 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM46_14905 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM46_07795 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GYM46_08665 HAD-IA family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:bmed00052]
D GYM46_16590 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D GYM46_09980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_05165 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D GYM46_01980 DUF4982 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D GYM46_01955 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D GYM46_01950 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D GYM46_03850 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D GYM46_03860 glycoside hydrolase family 97 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:bmed00053]
D GYM46_12365 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM46_16595 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_00585 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_07750 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D GYM46_12360 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:bmed00500]
D GYM46_03850 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D GYM46_03860 glycoside hydrolase family 97 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D GYM46_09980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GYM46_01325 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_04380 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_11985 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_12250 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_04920 glycoside hydrolase family 5 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D GYM46_05340 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D GYM46_08575 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D GYM46_03870 glucan 1,4-alpha-glucosidase K01178 SGA1; glucoamylase [EC:3.2.1.3]
D GYM46_08180 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D GYM46_08170 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_05165 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D GYM46_07685 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM46_02630 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bmed00520]
D GYM46_12725 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D GYM46_02630 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GYM46_08500 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GYM46_08495 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D GYM46_15885 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D GYM46_05805 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D GYM46_05810 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D GYM46_00780 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GYM46_11690 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GYM46_05165 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_09980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GYM46_12365 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM46_05590 NAD-dependent epimerase/dehydratase family protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D GYM46_12360 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D GYM46_07795 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GYM46_07685 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM46_08575 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D GYM46_08560 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
C 00620 Pyruvate metabolism [PATH:bmed00620]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM46_16335 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM46_16330 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM46_16325 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_00700 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D GYM46_11285 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM46_12645 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM46_13690 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM46_01805 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM46_01810 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM46_05840 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM46_00705 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D GYM46_15165 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D GYM46_00910 poxB; ubiquinone-dependent pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D GYM46_01815 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D GYM46_07035 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D GYM46_11270 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D GYM46_14535 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D GYM46_07305 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM46_16250 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GYM46_09730 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM46_12425 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D GYM46_10390 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_03900 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bmed00630]
D GYM46_02960 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM46_10390 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM46_05890 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GYM46_14855 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GYM46_09485 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_11280 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D GYM46_12005 MaoC family dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D GYM46_03200 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM46_03215 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D GYM46_03225 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D GYM46_03205 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_03210 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_08100 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D GYM46_15890 HAD-IA family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D GYM46_15410 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM46_16180 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM46_12785 aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D GYM46_12780 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D GYM46_12795 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_12790 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D GYM46_04535 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D GYM46_03705 alpha/beta fold hydrolase K01432 AFMID; arylformamidase [EC:3.5.1.9]
D GYM46_03455 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GYM46_15840 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:bmed00640]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM46_07205 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D GYM46_07200 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D GYM46_07195 pyruvate dehydrogenase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_13690 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM46_01805 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM46_01810 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM46_05840 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM46_03215 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D GYM46_03225 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D GYM46_03200 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM46_03205 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_03210 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_06475 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM46_06455 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM46_10860 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00650 Butanoate metabolism [PATH:bmed00650]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_08205 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_12005 MaoC family dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D GYM46_15525 phaC; class I poly(R)-hydroxyalkanoic acid synthase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D GYM46_10160 polyhydroxyalkanoate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D GYM46_11280 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D GYM46_08405 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM46_08400 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM46_08415 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM46_08410 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GYM46_06730 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_09850 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_15165 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D GYM46_07645 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GYM46_02400 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D GYM46_02405 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D GYM46_15295 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D GYM46_03910 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM46_03905 acetolactate synthase 3 regulatory subunit domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:bmed00660]
D GYM46_03910 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM46_03905 acetolactate synthase 3 regulatory subunit domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D GYM46_06700 acetyl-CoA hydrolase/transferase family protein K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-]
D GYM46_06475 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM46_06455 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM46_03895 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D GYM46_03890 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D GYM46_03885 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:bmed00562]
D GYM46_12915 3'(2'),5'-bisphosphate nucleotidase CysQ K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GYM46_13295 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GYM46_07785 phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D GYM46_03275 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_15470 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_10860 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GYM46_14905 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:bmed00190]
D GYM46_14615 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D GYM46_14620 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D GYM46_14625 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D GYM46_14630 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D GYM46_14635 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D GYM46_14645 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D GYM46_14660 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D GYM46_14665 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D GYM46_14680 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D GYM46_14685 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D GYM46_14690 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D GYM46_14695 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D GYM46_14700 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D GYM46_14705 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D GYM46_13870 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D GYM46_08405 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM46_08400 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM46_08415 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM46_08410 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GYM46_01730 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D GYM46_01720 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D GYM46_11155 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GYM46_16565 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D GYM46_11170 cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D GYM46_11150 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D GYM46_00400 ctaD; cytochrome c oxidase subunit I K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9]
D GYM46_11145 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D GYM46_00395 cytochrome B K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D GYM46_11160 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D GYM46_15490 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM46_16570 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D GYM46_16575 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D GYM46_16580 cyoA; ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D GYM46_02020 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GYM46_12610 cytochrome bd-I ubiquinol oxidase subunit CydA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GYM46_02025 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GYM46_12615 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GYM46_12620 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D GYM46_01530 cytochrome c family protein K08738 CYC; cytochrome c
D GYM46_10265 cytochrome c family protein K08738 CYC; cytochrome c
D GYM46_09530 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D GYM46_09540 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D GYM46_09535 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GYM46_09525 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D GYM46_09550 ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GYM46_12750 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GYM46_12760 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GYM46_12765 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GYM46_12755 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D GYM46_05505 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D GYM46_01235 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GYM46_10475 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:bmed00710]
D GYM46_03940 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GYM46_03930 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM46_03945 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM46_12800 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM46_03625 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM46_15880 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D GYM46_14905 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM46_07155 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GYM46_08275 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D GYM46_09730 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM46_12425 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D GYM46_07305 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:bmed00720]
D GYM46_12425 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D GYM46_09730 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM46_16250 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GYM46_08405 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM46_08400 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM46_08415 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM46_08410 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GYM46_06455 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM46_06475 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_08460 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM46_09485 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D GYM46_13690 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM46_01805 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM46_01810 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM46_05840 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM46_03200 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM46_03205 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_03210 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_15815 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D GYM46_13645 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:bmed00680]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D GYM46_10980 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D GYM46_16180 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM46_16345 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM46_09730 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM46_03945 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM46_12800 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM46_04695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GYM46_01610 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM46_03980 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:bmed00910]
D GYM46_14370 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GYM46_14375 NarK/NasA family nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GYM46_14275 ABC transporter substrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D GYM46_14280 ABC transporter permease K15577 nrtB; nitrate/nitrite transport system permease protein
D GYM46_14285 ATP-binding cassette domain-containing protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D GYM46_14365 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14360 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14350 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14315 molybdopterin-dependent oxidoreductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D GYM46_14305 NAD(P)/FAD-dependent oxidoreductase K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D GYM46_14310 nirD; nitrite reductase small subunit NirD K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D GYM46_14215 nirK; nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D GYM46_01375 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GYM46_07500 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D GYM46_15410 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM46_04410 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GYM46_04405 NAD(P)-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D GYM46_00425 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D GYM46_03720 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D GYM46_14330 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:bmed00920]
D GYM46_12355 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GYM46_12350 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM46_10185 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D GYM46_03410 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D GYM46_05045 oxidoreductase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D GYM46_03415 nitrite/sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D GYM46_01855 NAD(P)/FAD-dependent oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D GYM46_15335 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D GYM46_01345 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GYM46_03405 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GYM46_04165 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GYM46_16305 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GYM46_04340 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D GYM46_04345 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D GYM46_13605 long-chain-fatty-acid--CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D GYM46_15275 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D GYM46_11370 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:bmed00061]
D GYM46_13690 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM46_01805 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM46_01810 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM46_05840 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM46_15670 acyl carrier protein K02078 acpP; acyl carrier protein
D GYM46_15655 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM46_16110 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GYM46_08115 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D GYM46_15675 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GYM46_08255 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_09595 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_12670 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_15665 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_08110 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D GYM46_14835 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D GYM46_09975 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:bmed00071]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_14505 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GYM46_11365 acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D GYM46_16385 AMP-binding protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D GYM46_05105 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D GYM46_00700 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:bmed00561]
D GYM46_11285 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM46_07270 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D GYM46_16115 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D GYM46_01155 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D GYM46_05990 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM46_13940 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM46_08530 glycosyltransferase family 1 protein K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
D GYM46_05590 NAD-dependent epimerase/dehydratase family protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
C 00564 Glycerophospholipid metabolism [PATH:bmed00564]
D GYM46_04630 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D GYM46_01155 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D GYM46_05990 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM46_13940 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM46_03275 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_15470 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_09760 alpha/beta hydrolase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D GYM46_12290 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D GYM46_13290 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D GYM46_01150 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D GYM46_16385 AMP-binding protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D GYM46_14805 CDP-archaeol synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D GYM46_03735 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D GYM46_14555 HAD-IB family hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
C 00565 Ether lipid metabolism
D GYM46_03275 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_15470 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:bmed00600]
D GYM46_12240 glycosyl hydrolase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM46_01980 DUF4982 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00590 Arachidonic acid metabolism
D GYM46_06325 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D GYM46_08145 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:bmed00230]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_02945 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D GYM46_00270 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D GYM46_12860 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D GYM46_01260 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D GYM46_03630 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D GYM46_03550 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D GYM46_03475 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D GYM46_03500 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D GYM46_01250 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D GYM46_01590 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D GYM46_01595 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D GYM46_03470 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D GYM46_03435 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D GYM46_07140 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GYM46_10790 bifunctional metallophosphatase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D GYM46_00040 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GYM46_11725 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D GYM46_05965 phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D GYM46_02350 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D GYM46_01285 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GYM46_08025 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D GYM46_02330 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GYM46_15690 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D GYM46_01205 TSCPD domain-containing protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_06690 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_14410 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_06780 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GYM46_14165 ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D GYM46_12715 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D GYM46_00890 HD family hydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D GYM46_15125 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D GYM46_01240 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D GYM46_02690 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D GYM46_03975 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D GYM46_06315 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D GYM46_12815 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D GYM46_03590 YmdB family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D GYM46_13540 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D GYM46_16415 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D GYM46_12355 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GYM46_12350 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM46_00425 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:bmed00240]
D GYM46_11635 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GYM46_04375 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GYM46_01135 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GYM46_11325 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D GYM46_01140 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D GYM46_11250 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D GYM46_15130 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D GYM46_07600 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D GYM46_14790 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D GYM46_01285 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GYM46_16415 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D GYM46_07460 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D GYM46_00760 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D GYM46_14915 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D GYM46_10425 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D GYM46_13600 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D GYM46_10790 bifunctional metallophosphatase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D GYM46_00040 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GYM46_03590 YmdB family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D GYM46_14165 ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D GYM46_06285 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D GYM46_01205 TSCPD domain-containing protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_06690 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_14410 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_06780 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GYM46_00890 HD family hydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D GYM46_16530 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D GYM46_07870 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D GYM46_16200 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GYM46_10270 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:bmed00250]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_11530 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D GYM46_05735 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GYM46_08770 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GYM46_03310 N-acetylglutaminylglutamine amidotransferase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM46_09835 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GYM46_06720 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GYM46_09680 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GYM46_03975 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D GYM46_03435 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D GYM46_01135 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GYM46_06730 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_09850 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_04410 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GYM46_04405 NAD(P)-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D GYM46_07500 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D GYM46_08545 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GYM46_15410 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM46_11635 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GYM46_04375 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GYM46_03500 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D GYM46_08500 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GYM46_00270 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:bmed00260]
D GYM46_06385 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM46_08120 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_09570 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_04335 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D GYM46_04330 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D GYM46_04310 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D GYM46_13670 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D GYM46_16180 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM46_04695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GYM46_01610 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM46_03980 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GYM46_03190 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GYM46_03185 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D GYM46_16195 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D GYM46_10110 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM46_12785 aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D GYM46_12780 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D GYM46_12795 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_12790 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D GYM46_01405 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D GYM46_01400 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D GYM46_07265 threonine/serine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GYM46_05925 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GYM46_11515 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GYM46_05845 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D GYM46_05855 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:bmed00270]
D GYM46_01345 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GYM46_03405 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GYM46_04165 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GYM46_16305 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GYM46_01400 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D GYM46_15320 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GYM46_01405 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D GYM46_13630 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_13640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_13420 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D GYM46_04680 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GYM46_02335 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D GYM46_11725 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D GYM46_12060 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D GYM46_06510 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM46_07830 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GYM46_06385 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM46_08120 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_09570 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_04335 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D GYM46_04340 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D GYM46_04345 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D GYM46_11770 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM46_11355 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D GYM46_08355 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_15335 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D GYM46_09580 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM46_01610 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM46_03980 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:bmed00280]
D GYM46_11770 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM46_07205 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D GYM46_07200 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D GYM46_07195 pyruvate dehydrogenase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_14505 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GYM46_00845 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_03215 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D GYM46_03225 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D GYM46_03200 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM46_03205 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_03210 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_15260 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D GYM46_10885 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D GYM46_10860 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GYM46_13130 ATP-grasp domain-containing protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D GYM46_00205 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D GYM46_00200 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D GYM46_07645 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GYM46_02400 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D GYM46_02405 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bmed00290]
D GYM46_07265 threonine/serine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GYM46_05925 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GYM46_11515 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GYM46_03895 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D GYM46_03890 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D GYM46_03885 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D GYM46_03910 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM46_03905 acetolactate synthase 3 regulatory subunit domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D GYM46_03915 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GYM46_14955 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GYM46_03920 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GYM46_11770 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM46_03900 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:bmed00300]
D GYM46_04335 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D GYM46_06385 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM46_08120 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_09570 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_04775 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GYM46_15090 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GYM46_07885 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D GYM46_08635 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D GYM46_06155 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GYM46_06270 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D GYM46_07300 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D GYM46_09690 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D GYM46_12150 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GYM46_12155 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:bmed00310]
D GYM46_06445 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_06730 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_09850 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_12220 VOC family protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D GYM46_16440 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:bmed00220]
D GYM46_06150 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D GYM46_06720 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GYM46_09680 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GYM46_03500 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D GYM46_15410 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM46_11635 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GYM46_04375 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GYM46_00425 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D GYM46_07500 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_08005 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D GYM46_08625 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D GYM46_15510 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D GYM46_06155 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:bmed00330]
D GYM46_10090 creatininase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D GYM46_05675 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D GYM46_00420 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D GYM46_05670 aguB; N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D GYM46_10010 type III PLP-dependent enzyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D GYM46_10110 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM46_14490 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM46_02665 arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D GYM46_02675 astB; N-succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D GYM46_02670 astD; succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D GYM46_11750 NAD(P)-binding domain-containing protein K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D GYM46_08545 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GYM46_04390 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D GYM46_04395 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D GYM46_15760 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_16440 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:bmed00340]
D GYM46_05115 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D GYM46_05145 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D GYM46_05135 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D GYM46_05130 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D GYM46_05140 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D GYM46_05125 hisB; imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D GYM46_06000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM46_05120 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D GYM46_15830 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D GYM46_15835 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D GYM46_15855 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D GYM46_15845 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D GYM46_15840 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D GYM46_10110 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:bmed00350]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_06000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM46_05725 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GYM46_04520 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D GYM46_07745 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D GYM46_05750 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D GYM46_10110 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D GYM46_00700 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM46_14735 isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D GYM46_06730 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_09850 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_07740 fumarylacetoacetate hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:bmed00360]
D GYM46_02680 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GYM46_10110 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM46_03750 crotonase/enoyl-CoA hydratase family protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D GYM46_08205 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_06000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM46_05725 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GYM46_16440 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GYM46_09505 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D GYM46_14490 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM46_05105 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:bmed00380]
D GYM46_08310 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D GYM46_03705 alpha/beta fold hydrolase K01432 AFMID; arylformamidase [EC:3.5.1.9]
D GYM46_06445 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10110 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM46_14490 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM46_09505 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bmed00400]
D GYM46_15920 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GYM46_13710 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D GYM46_01800 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D GYM46_07465 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D GYM46_13705 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D GYM46_10410 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D GYM46_13365 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D GYM46_14895 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GYM46_14885 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM46_14880 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D GYM46_05860 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D GYM46_14875 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D GYM46_05845 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D GYM46_05855 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D GYM46_15935 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D GYM46_15930 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_06000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM46_02680 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:bmed00410]
D GYM46_12100 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D GYM46_13105 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_10860 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:bmed00430]
D GYM46_06680 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_12980 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_09835 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GYM46_07500 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism [PATH:bmed00440]
D GYM46_03285 phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1]
D GYM46_16515 MBL fold metallo-hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:bmed00450]
D GYM46_04345 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D GYM46_15320 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GYM46_13630 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_13640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_13420 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D GYM46_01400 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D GYM46_13920 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D GYM46_08480 NAD(P)/FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D GYM46_11580 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D GYM46_12355 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GYM46_12350 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM46_14115 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GYM46_13150 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:bmed00460]
D GYM46_01325 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_04380 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_11985 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_12250 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_06680 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_12980 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_05735 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GYM46_08770 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GYM46_16180 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:bmed00470]
D GYM46_00250 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GYM46_16440 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GYM46_11700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM46_03500 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D GYM46_09705 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D GYM46_12165 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GYM46_07300 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D GYM46_09690 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D GYM46_14220 FAD-binding oxidoreductase K19746 dauA; D-arginine dehydrogenase [EC:1.4.99.6]
C 00480 Glutathione metabolism [PATH:bmed00480]
D GYM46_06680 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_12980 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_00010 hypothetical protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D GYM46_11355 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D GYM46_08355 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D GYM46_08675 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GYM46_15730 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GYM46_05900 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_06440 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_10075 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_11610 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_12370 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_00080 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_15875 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D GYM46_08460 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM46_05150 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GYM46_16320 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D GYM46_11235 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D GYM46_10010 type III PLP-dependent enzyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:bmed00511]
D GYM46_01980 DUF4982 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D GYM46_12240 glycosyl hydrolase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis [PATH:bmed00540]
D GYM46_14840 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GYM46_11720 UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D GYM46_14830 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D GYM46_14845 lpxI; UDP-2,3-diacylglucosamine diphosphatase LpxI K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D GYM46_14850 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D GYM46_12875 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D GYM46_08165 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D GYM46_15350 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D GYM46_10260 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D GYM46_12880 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D GYM46_12025 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D GYM46_15355 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D GYM46_07055 HAD family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D GYM46_15360 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D GYM46_11330 glycosyltransferase family 9 protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bmed00541]
D GYM46_09980 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GYM46_12365 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM46_12360 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D GYM46_08575 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D GYM46_08560 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D GYM46_15885 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:bmed00550]
D GYM46_00780 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GYM46_11690 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GYM46_05035 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GYM46_11680 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GYM46_12165 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GYM46_12150 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GYM46_11700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM46_12155 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GYM46_14800 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GYM46_05885 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM46_06695 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM46_12160 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GYM46_03680 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GYM46_07225 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D GYM46_10150 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_13805 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_16605 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GYM46_12145 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GYM46_16405 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:bmed00552]
D GYM46_05885 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM46_06695 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM46_04470 WecB/TagA/CpsF family glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:bmed00543]
D GYM46_02375 MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D GYM46_01040 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase K20997 pslA; polysaccharide biosynthesis protein PslA
D GYM46_01345 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:bmed00730]
D GYM46_05385 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D GYM46_05190 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D GYM46_13885 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM46_01585 FAD-dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D GYM46_11945 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D GYM46_01790 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D GYM46_07370 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D GYM46_13340 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D GYM46_16145 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D GYM46_16090 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D GYM46_06955 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GYM46_13540 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:bmed00740]
D GYM46_16160 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GYM46_04690 cytidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GYM46_16170 RibD family protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GYM46_16155 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D GYM46_16165 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D GYM46_12000 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D GYM46_09625 PA-phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D GYM46_00605 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D GYM46_13240 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:bmed00750]
D GYM46_13385 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D GYM46_03980 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GYM46_15705 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D GYM46_15135 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D GYM46_04310 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:bmed00760]
D GYM46_11530 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D GYM46_11520 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D GYM46_11535 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D GYM46_01450 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D GYM46_10790 bifunctional metallophosphatase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D GYM46_00040 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GYM46_09910 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D GYM46_16415 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D GYM46_10255 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D GYM46_02245 NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D GYM46_10035 NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D GYM46_16470 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D GYM46_12805 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D GYM46_10960 NAD-dependent deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D GYM46_01560 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D GYM46_03015 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D GYM46_03020 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D GYM46_03005 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D GYM46_06730 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM46_09850 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:bmed00770]
D GYM46_03910 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM46_03905 acetolactate synthase 3 regulatory subunit domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D GYM46_03915 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GYM46_14955 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GYM46_03920 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GYM46_00320 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D GYM46_13105 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D GYM46_14715 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D GYM46_07865 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D GYM46_16415 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D GYM46_02705 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D GYM46_07470 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D GYM46_15140 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D GYM46_11770 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM46_12100 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:bmed00780]
D GYM46_08115 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D GYM46_15675 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GYM46_08255 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_09595 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_12670 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_15665 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_14835 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D GYM46_09975 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D GYM46_06350 alpha/beta hydrolase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D GYM46_11115 alpha/beta hydrolase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D GYM46_14710 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:bmed00785]
D GYM46_00820 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D GYM46_16380 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16335 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM46_16330 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM46_16325 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GYM46_06450 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D GYM46_06445 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM46_07205 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D GYM46_07200 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D GYM46_07195 pyruvate dehydrogenase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D GYM46_12785 aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D GYM46_12780 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D GYM46_12795 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM46_12790 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:bmed00790]
D GYM46_10235 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D GYM46_12990 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D GYM46_06955 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GYM46_03575 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_09235 hypothetical protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_11955 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_00600 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_03685 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D GYM46_15115 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D GYM46_05205 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D GYM46_16210 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GYM46_05835 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D GYM46_16160 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GYM46_06170 anthranilate synthase component I family protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D GYM46_02540 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM46_14225 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM46_06940 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D GYM46_02680 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GYM46_02545 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GYM46_02550 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D GYM46_01370 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D GYM46_14385 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D GYM46_14425 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D GYM46_14435 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D GYM46_14430 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D GYM46_14420 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D GYM46_14325 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:bmed00670]
D GYM46_16210 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GYM46_15815 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D GYM46_16180 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM46_01260 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D GYM46_07140 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GYM46_08130 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GYM46_12795 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM46_13630 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_13640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_16200 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GYM46_03455 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GYM46_13645 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D GYM46_03605 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:bmed00860]
D GYM46_16195 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D GYM46_13085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14860 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14935 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D GYM46_04640 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D GYM46_04645 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D GYM46_07450 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D GYM46_13030 hemF; oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D GYM46_12625 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D GYM46_14210 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D GYM46_07440 CopD family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D GYM46_00385 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D GYM46_07445 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D GYM46_03425 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D GYM46_14290 siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D GYM46_14320 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D GYM46_11155 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GYM46_15490 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM46_13795 cobS; cobaltochelatase subunit CobS K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D GYM46_08190 cobT; cobaltochelatase subunit CobT K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2]
D GYM46_06990 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GYM46_14985 biliverdin-producing heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D GYM46_13330 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bmed00130]
D GYM46_11125 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D GYM46_12945 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D GYM46_13240 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D GYM46_06380 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D GYM46_07325 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D GYM46_06930 class I SAM-dependent methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D GYM46_05700 demethoxyubiquinone hydroxylase family protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D GYM46_00445 NAD(P)H-dependent oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GYM46_16395 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GYM46_05725 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:bmed00900]
D GYM46_11945 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D GYM46_14810 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D GYM46_16460 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D GYM46_12410 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D GYM46_06400 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D GYM46_12740 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_13240 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D GYM46_15825 type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D GYM46_11940 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D GYM46_01780 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D GYM46_14800 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:bmed00906]
D GYM46_01775 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:bmed00903]
D GYM46_02280 nuclear transport factor 2 family protein K10533 E3.3.2.8; limonene-1,2-epoxide hydrolase [EC:3.3.2.8]
C 00907 Pinene, camphor and geraniol degradation [PATH:bmed00907]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_07645 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D GYM46_03625 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D GYM46_14245 chorismate mutase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
D GYM46_14475 chorismate mutase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:bmed00946]
D GYM46_01325 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_04380 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_11985 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_12250 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D GYM46_11865 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:bmed00332]
D GYM46_04390 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D GYM46_04395 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:bmed00261]
D GYM46_12355 cysN; sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GYM46_12350 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM46_06385 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM46_08120 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_09570 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM46_04775 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GYM46_15090 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GYM46_07885 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:bmed00521]
D GYM46_05165 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D GYM46_11080 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM46_08525 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GYM46_12915 3'(2'),5'-bisphosphate nucleotidase CysQ K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GYM46_13295 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D GYM46_05165 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis [PATH:bmed00401]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_06000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
D GYM46_04900 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
D GYM46_11970 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
D GYM46_11975 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
D GYM46_12255 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
C 00405 Phenazine biosynthesis
D GYM46_14895 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GYM46_14885 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D GYM46_15655 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM46_08255 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_09595 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_12670 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_15665 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_09975 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D GYM46_15670 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:bmed00999]
D GYM46_04680 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GYM46_07465 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D GYM46_01325 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_04380 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_11985 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM46_12250 glycoside hydrolase family 3 protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:bmed00362]
D GYM46_05105 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D GYM46_08375 2Fe-2S iron-sulfur cluster binding domain-containing protein K04755 fdx; ferredoxin, 2Fe-2S
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D GYM46_08205 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:bmed00627]
D GYM46_14490 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM46_13240 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:bmed00364]
D GYM46_07130 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:bmed00625]
D GYM46_00700 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:bmed00361]
D GYM46_07130 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:bmed00623]
D GYM46_07130 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:bmed00643]
D GYM46_04520 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D GYM46_07745 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D GYM46_05750 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D GYM46_14490 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:bmed00930]
D GYM46_16595 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_00585 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_09645 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:bmed00626]
D GYM46_00700 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM46_10970 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:bmed03020]
D GYM46_14010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GYM46_14015 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GYM46_13560 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GYM46_15120 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:bmed03010]
D GYM46_10430 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D GYM46_14780 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D GYM46_13465 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D GYM46_11015 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D GYM46_13520 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D GYM46_00210 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D GYM46_14035 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D GYM46_13505 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D GYM46_15505 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D GYM46_13430 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D GYM46_13555 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D GYM46_14030 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D GYM46_13550 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D GYM46_13500 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D GYM46_07095 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D GYM46_09945 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D GYM46_13480 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D GYM46_00215 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D GYM46_13455 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D GYM46_04735 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D GYM46_13200 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GYM46_00105 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D GYM46_13450 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D GYM46_13435 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D GYM46_13440 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D GYM46_13495 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D GYM46_13510 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D GYM46_00070 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D GYM46_00220 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D GYM46_00075 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D GYM46_00110 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D GYM46_15500 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D GYM46_13485 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D GYM46_13530 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D GYM46_13470 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D GYM46_13565 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D GYM46_13515 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D GYM46_08320 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D GYM46_05635 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D GYM46_05955 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D GYM46_13460 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D GYM46_13445 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D GYM46_13490 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D GYM46_01660 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D GYM46_05950 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D GYM46_10520 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D GYM46_13475 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D GYM46_13525 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D GYM46_13280 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D GYM46_16355 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D GYM46_01430 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D GYM46_06755 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D GYM46_05640 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D GYM46_03170 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D GYM46_12500 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM46_04830 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM46_04815 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM46_12515 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM46_12520 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM46_04810 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:bmed00970]
D GYM46_10400 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_04820 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_08215 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_12510 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_10640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_06675 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_06950 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_15565 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_15575 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GYM46_14600 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GYM46_14605 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GYM46_15595 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D GYM46_14965 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D GYM46_04350 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM46_15540 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM46_13185 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM46_08790 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM46_10320 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM46_00725 tRNA-His K14226 tRNA-His; tRNA His
D GYM46_04825 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GYM46_12505 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GYM46_15030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_05760 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_04465 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_03330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_00830 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_14455 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM46_02635 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM46_12525 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM46_04805 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM46_09665 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM46_12090 tRNA-Ile K14230 tRNA-Met; tRNA Met
D GYM46_00745 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D GYM46_15555 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM46_14960 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM46_16095 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM46_01035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_16540 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_00900 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_12230 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_04650 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM46_00790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM46_00375 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM46_00125 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D GYM46_13180 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D GYM46_14585 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM46_15900 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM46_05485 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM46_13085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14860 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_01110 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GYM46_01100 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D GYM46_01115 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D GYM46_08445 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GYM46_01220 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM46_12415 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GYM46_12420 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GYM46_08645 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GYM46_00045 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GYM46_12995 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GYM46_13150 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GYM46_08130 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GYM46_15615 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GYM46_07385 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM46_12455 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GYM46_02595 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D GYM46_12835 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM46_14745 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GYM46_08060 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GYM46_05620 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GYM46_05605 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GYM46_13830 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM46_07940 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:bmed03060]
D GYM46_13535 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM46_00120 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM46_14910 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM46_00020 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D GYM46_00015 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D GYM46_00025 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM46_06745 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM46_08015 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM46_07480 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D GYM46_09940 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM46_10250 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D GYM46_10055 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM46_15390 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D GYM46_15395 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D GYM46_15400 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D GYM46_01825 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GYM46_15145 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GYM46_02215 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GYM46_08830 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GYM46_12850 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:bmed04122]
D GYM46_13885 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM46_15335 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D GYM46_16475 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D GYM46_02465 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GYM46_14435 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D GYM46_14385 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D GYM46_14440 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D GYM46_08085 moeB; molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D GYM46_14425 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D GYM46_14430 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D GYM46_01795 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:bmed03018]
D GYM46_09740 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D GYM46_14060 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D GYM46_16345 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM46_07100 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GYM46_11075 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GYM46_01410 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GYM46_04945 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D GYM46_06340 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM46_07435 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D GYM46_14720 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D GYM46_07895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM46_07660 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM46_16435 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D GYM46_01235 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GYM46_10475 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D GYM46_02845 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:bmed03030]
D GYM46_07475 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM46_14765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM46_10245 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM46_16525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM46_07395 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM46_15735 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GYM46_04745 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM46_00240 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D GYM46_05025 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D GYM46_02750 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09155 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_15385 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D GYM46_12660 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D GYM46_07025 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM46_00685 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:bmed03410]
D GYM46_10115 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D GYM46_03640 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D GYM46_06365 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D GYM46_06095 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GYM46_11500 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GYM46_12665 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D GYM46_12385 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D GYM46_15105 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D GYM46_02880 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GYM46_07345 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GYM46_07025 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM46_15535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM46_00685 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:bmed03420]
D GYM46_16490 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D GYM46_01750 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D GYM46_11450 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D GYM46_03715 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D GYM46_16300 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GYM46_07025 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM46_00685 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:bmed03430]
D GYM46_07760 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D GYM46_13770 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D GYM46_16300 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GYM46_10645 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D GYM46_12855 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D GYM46_11930 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D GYM46_15535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM46_02750 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09155 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_14765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM46_04745 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM46_10245 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM46_07395 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM46_16525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM46_07475 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM46_15735 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GYM46_00685 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:bmed03440]
D GYM46_15535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM46_02750 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09155 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_04750 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D GYM46_15175 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D GYM46_10280 recR; recombination protein RecR K06187 recR; recombination protein RecR
D GYM46_09640 recA; recombinase RecA K03553 recA; recombination protein RecA
D GYM46_07025 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM46_05305 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D GYM46_05300 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D GYM46_05310 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D GYM46_16500 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GYM46_14765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM46_04745 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM46_10245 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM46_07395 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM46_16525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM46_07475 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM46_15735 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GYM46_08280 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:bmed03450]
D GYM46_10815 Ku protein K10979 ku; DNA end-binding protein Ku
D GYM46_10810 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:bmed02010]
D GYM46_14275 ABC transporter substrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D GYM46_14280 ABC transporter permease K15577 nrtB; nitrate/nitrite transport system permease protein
D GYM46_14285 ATP-binding cassette domain-containing protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D GYM46_14390 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D GYM46_14395 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D GYM46_14400 modC; molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D GYM46_00360 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D GYM46_02420 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GYM46_02430 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GYM46_02425 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GYM46_09985 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GYM46_01645 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D GYM46_01640 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D GYM46_01635 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D GYM46_09995 phnD; phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D GYM46_09990 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D GYM46_10000 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D GYM46_15325 amino acid ABC transporter substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D GYM46_08610 chain-length determining protein K10107 kpsE; capsular polysaccharide transport system permease protein
D GYM46_08615 ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein
D GYM46_08605 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D GYM46_13325 ABC transporter permease subunit K20461 nukG; lantibiotic transport system permease protein
D GYM46_13320 ABC transporter ATP-binding protein K20459 nukF; lantibiotic transport system ATP-binding protein
D GYM46_14750 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D GYM46_14755 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GYM46_09465 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D GYM46_09470 ccsA; cytochrome c biogenesis protein CcsA K02195 ccmC; heme exporter protein C
D GYM46_09475 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D GYM46_09480 ccmA; heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D GYM46_15725 LptF/LptG family permease K07091 lptF; lipopolysaccharide export system permease protein
D GYM46_15720 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D GYM46_04445 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D GYM46_05980 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D GYM46_05975 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D GYM46_12890 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D GYM46_13675 ATP-binding cassette domain-containing protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D GYM46_12600 ATP-binding cassette domain-containing protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D GYM46_12605 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:bmed02060]
D GYM46_07790 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D GYM46_07795 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GYM46_06390 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D GYM46_04430 ptsN; PTS IIA-like nitrogen regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:bmed03070]
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_00655 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D GYM46_00660 general secretion pathway protein K02452 gspC; general secretion pathway protein C
D GYM46_00645 gspF; type II secretion system inner membrane protein GspF K02455 gspF; general secretion pathway protein F
D GYM46_00640 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G
D GYM46_00635 type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
D GYM46_00630 gspI; type II secretion system minor pseudopilin GspI K02458 gspI; general secretion pathway protein I
D GYM46_00625 gspJ; type II secretion system minor pseudopilin GspJ K02459 gspJ; general secretion pathway protein J
D GYM46_00620 gspK; type II secretion system minor pseudopilin GspK K02460 gspK; general secretion pathway protein K
D GYM46_00615 hypothetical protein K02461 gspL; general secretion pathway protein L
D GYM46_00610 type II secretion system protein M K02462 gspM; general secretion pathway protein M
D GYM46_00650 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D GYM46_00020 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D GYM46_00015 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D GYM46_00120 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM46_14910 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM46_13535 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM46_00025 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM46_06745 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM46_08015 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM46_10055 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM46_07480 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D GYM46_09940 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM46_15390 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D GYM46_15395 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D GYM46_15400 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D GYM46_03090 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:bmed02020]
D GYM46_01650 PAS domain-containing protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM46_01625 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D GYM46_06955 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GYM46_03575 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_09235 hypothetical protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_11955 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_00600 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D GYM46_09985 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GYM46_09625 PA-phosphatase K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D GYM46_00605 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D GYM46_11760 HAMP domain-containing protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GYM46_11765 response regulator transcription factor K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GYM46_04580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_08760 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_08930 copper-binding protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D GYM46_08940 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D GYM46_08935 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein
D GYM46_02770 flagellin K02406 fliC; flagellin
D GYM46_02780 flagellin K02406 fliC; flagellin
D GYM46_02785 flagellin K02406 fliC; flagellin
D GYM46_02790 flagellin K02406 fliC; flagellin
D GYM46_02795 flagellin K02406 fliC; flagellin
D GYM46_02800 flagellin K02406 fliC; flagellin
D GYM46_12330 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D GYM46_10685 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GYM46_10680 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GYM46_10700 kdpA; potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D GYM46_10695 kdpB; potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D GYM46_10690 kdpC; potassium-transporting ATPase subunit KdpC K01548 kdpC; potassium-transporting ATPase KdpC subunit
D GYM46_15490 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM46_04740 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GYM46_09805 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D GYM46_06560 HAMP domain-containing histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D GYM46_07805 HAMP domain-containing protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D GYM46_07810 response regulator transcription factor K14981 chvI; two-component system, OmpR family, response regulator ChvI
D GYM46_16405 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D GYM46_14365 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14360 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14350 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14355 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D GYM46_15440 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D GYM46_15445 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GYM46_06190 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D GYM46_07995 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D GYM46_06200 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D GYM46_06205 type II and III secretion system protein family protein K02280 cpaC; pilus assembly protein CpaC
D GYM46_06215 pilus assembly protein CpaE K02282 cpaE; pilus assembly protein CpaE
D GYM46_06220 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GYM46_06225 type II secretion system F family protein K12510 tadB; tight adherence protein B
D GYM46_06230 type II secretion system F family protein K12511 tadC; tight adherence protein C
D GYM46_07950 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D GYM46_15415 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D GYM46_15410 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM46_16450 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D GYM46_16445 sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_04720 sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GYM46_04725 sigma-54-dependent Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D GYM46_04715 dicarboxylate/amino acid:cation symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D GYM46_04440 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D GYM46_06045 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_10200 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_10605 protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_04175 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_04705 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_04960 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06055 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06870 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06875 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_07765 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10125 PAS domain S-box protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10225 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10580 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10845 globin-coupled sensor protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06050 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_06060 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10230 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10600 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_11225 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_06065 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_10595 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_06070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10195 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10590 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10615 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_12030 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_06040 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10610 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10505 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D GYM46_10675 PAS domain S-box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D GYM46_01435 PleD family two-component system response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D GYM46_04275 HAMP domain-containing histidine kinase K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D GYM46_01440 response regulator K11443 divK; two-component system, cell cycle response regulator DivK
D GYM46_10205 response regulator K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D GYM46_10190 histidine phosphotransferase K13588 chpT; histidine phosphotransferase ChpT
D GYM46_04225 response regulator transcription factor K13584 ctrA; two-component system, cell cycle response regulator CtrA
D GYM46_05490 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR
D GYM46_10575 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_10855 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_14190 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_00455 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_10570 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D GYM46_14185 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D GYM46_00460 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D GYM46_14200 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D GYM46_00450 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D GYM46_11860 sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D GYM46_10360 ActS/PrrB/RegB family redox-sensitive histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GYM46_16555 HAMP domain-containing histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GYM46_10355 ActR/PrrA/RegA family redox response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D GYM46_16550 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D GYM46_01730 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D GYM46_01720 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D GYM46_01530 cytochrome c family protein K08738 CYC; cytochrome c
D GYM46_10265 cytochrome c family protein K08738 CYC; cytochrome c
D GYM46_02020 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GYM46_12610 cytochrome bd-I ubiquinol oxidase subunit CydA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GYM46_02025 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GYM46_12615 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GYM46_12620 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_08155 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D GYM46_13760 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D GYM46_04920 glycoside hydrolase family 5 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D GYM46_05340 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D GYM46_02295 DUF4880 domain-containing protein K07165 fecR; transmembrane sensor
D GYM46_09225 DUF4880 domain-containing protein K07165 fecR; transmembrane sensor
D GYM46_10330 DUF4880 domain-containing protein K07165 fecR; transmembrane sensor
D GYM46_10725 anti-sigma factor K07165 fecR; transmembrane sensor
D GYM46_12275 hypothetical protein K07165 fecR; transmembrane sensor
D GYM46_14975 FecR family protein K07165 fecR; transmembrane sensor
D GYM46_15005 DUF4880 domain-containing protein K07165 fecR; transmembrane sensor
D GYM46_00550 DUF4974 domain-containing protein K07165 fecR; transmembrane sensor
D GYM46_00940 hypothetical protein K07165 fecR; transmembrane sensor
D GYM46_02555 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_05630 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_06080 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_06800 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_11350 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_14085 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_00350 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:bmed04148]
D GYM46_10010 type III PLP-dependent enzyme K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D GYM46_01730 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:bmed02024]
D GYM46_16435 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D GYM46_14895 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GYM46_14885 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM46_15920 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GYM46_10680 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GYM46_09185 trbB; P-type conjugative transfer ATPase TrbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D GYM46_09265 conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC
D GYM46_09270 conjugal transfer protein K20529 trbD; type IV secretion system protein TrbD
D GYM46_09275 conjugal transfer protein TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D GYM46_09280 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ
D GYM46_09285 trbL; P-type conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL
D GYM46_09290 conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF
D GYM46_09295 TrbG/VirB9 family P-type conjugative transfer protein K20532 trbG; type IV secretion system protein TrbG
D GYM46_09300 TrbI/VirB10 family protein K20533 trbI; type IV secretion system protein TrbI
D GYM46_02155 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D GYM46_09900 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D GYM46_04690 cytidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GYM46_16170 RibD family protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GYM46_03710 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D GYM46_06745 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM46_00120 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM46_14910 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM46_13535 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM46_00025 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM46_08015 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM46_10055 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM46_07480 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D GYM46_09940 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM46_03275 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_15470 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:bmed02030]
D GYM46_04175 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_04705 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_04960 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06055 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06870 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06875 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_07765 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10125 PAS domain S-box protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10225 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10580 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10845 globin-coupled sensor protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06065 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_10595 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_06050 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_06060 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10230 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10600 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_11225 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_06070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10195 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10590 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10615 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_12030 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10585 STAS domain-containing protein K03409 cheX; chemotaxis protein CheX
D GYM46_06040 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10610 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10485 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GYM46_10620 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GYM46_15015 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GYM46_06045 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_10200 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_10605 protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_11845 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D GYM46_03355 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D GYM46_11855 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_00825 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_12330 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D GYM46_15255 OmpA family protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:bmed02040]
D GYM46_04475 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D GYM46_11840 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D GYM46_11845 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D GYM46_11850 flagellar assembly protein FlbE K02411 fliH; flagellar assembly protein FliH
D GYM46_04195 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D GYM46_04200 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D GYM46_02445 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D GYM46_03360 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D GYM46_03355 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D GYM46_11855 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_00825 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_04490 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D GYM46_04495 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D GYM46_10220 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D GYM46_10215 fliR; flagellar type III secretion system protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D GYM46_11870 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D GYM46_10210 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D GYM46_03375 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D GYM46_04485 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D GYM46_04480 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D GYM46_02450 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D GYM46_02455 flagellar hook-basal body complex protein K02390 flgE; flagellar hook protein FlgE
D GYM46_03365 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D GYM46_03370 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D GYM46_03380 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D GYM46_13060 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D GYM46_13055 rod-binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D GYM46_02440 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D GYM46_02435 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D GYM46_02770 flagellin K02406 fliC; flagellin
D GYM46_02780 flagellin K02406 fliC; flagellin
D GYM46_02785 flagellin K02406 fliC; flagellin
D GYM46_02790 flagellin K02406 fliC; flagellin
D GYM46_02795 flagellin K02406 fliC; flagellin
D GYM46_02800 flagellin K02406 fliC; flagellin
D GYM46_12330 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D GYM46_15255 OmpA family protein K02557 motB; chemotaxis protein MotB
D GYM46_05010 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D GYM46_04440 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D GYM46_11860 sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D GYM46_16345 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:bmed04980]
D GYM46_06990 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GYM46_03205 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_03210 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM46_13630 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM46_13640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:bmed01501]
D GYM46_08340 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D GYM46_12725 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D GYM46_03250 peptidase M56 K02172 blaR1; bla regulator protein blaR1
D GYM46_03245 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM46_11865 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D GYM46_01540 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM46_01535 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_10150 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_13805 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_16605 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GYM46_12145 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:bmed01502]
D GYM46_11700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM46_00250 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GYM46_12155 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GYM46_12160 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GYM46_03680 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GYM46_16405 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bmed01503]
D GYM46_14065 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM46_04580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_08760 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_01540 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM46_01535 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_14840 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GYM46_09805 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:bmed01000]
C 01001 Protein kinases [BR:bmed01001]
D GYM46_09390 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM46_01650 PAS domain-containing protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM46_11760 HAMP domain-containing protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GYM46_10685 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GYM46_06560 HAMP domain-containing histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D GYM46_07805 HAMP domain-containing protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D GYM46_10760 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GYM46_16450 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D GYM46_04720 sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GYM46_06065 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_10595 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_10505 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D GYM46_10675 PAS domain S-box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D GYM46_04275 HAMP domain-containing histidine kinase K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D GYM46_10205 response regulator K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D GYM46_10575 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_10855 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_14190 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_00455 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_10360 ActS/PrrB/RegB family redox-sensitive histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GYM46_16555 HAMP domain-containing histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GYM46_02555 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_05630 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_06080 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_06800 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_11350 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_14085 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_00350 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_04120 DUF4118 domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:bmed01009]
D GYM46_07830 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
C 01002 Peptidases and inhibitors [BR:bmed01002]
D GYM46_02215 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GYM46_08830 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GYM46_12850 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GYM46_01515 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D GYM46_06195 pilus assembly protein CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GYM46_02330 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GYM46_00270 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D GYM46_04410 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GYM46_08500 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GYM46_03310 N-acetylglutaminylglutamine amidotransferase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM46_13275 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB
D GYM46_06325 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D GYM46_07230 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D GYM46_09710 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D GYM46_03030 M3 family oligoendopeptidase K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D GYM46_01275 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D GYM46_08055 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D GYM46_16405 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D GYM46_02815 M15 family metallopeptidase K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D GYM46_06725 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D GYM46_08765 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D GYM46_12465 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D GYM46_08675 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GYM46_15730 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GYM46_13035 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM46_02660 hydrolase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D GYM46_06270 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D GYM46_10045 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D GYM46_11065 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D GYM46_13980 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GYM46_03335 M20/M25/M40 family metallo-hydrolase K01302 CPQ; carboxypeptidase Q [EC:3.4.17.-]
D GYM46_05230 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D GYM46_07615 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D GYM46_14815 RIP metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D GYM46_03250 peptidase M56 K02172 blaR1; bla regulator protein blaR1
D GYM46_04580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_08760 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_08725 PDZ domain-containing protein K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D GYM46_14125 S8 family peptidase K17734 aprX; serine protease AprX [EC:3.4.21.-]
D GYM46_07285 S9 family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D GYM46_07290 S9 family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D GYM46_14485 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D GYM46_15265 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D GYM46_14545 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D GYM46_14575 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D GYM46_14870 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D GYM46_01825 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GYM46_15145 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GYM46_15760 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D GYM46_09605 alpha/beta hydrolase K27108 ephA_B; epoxide hydrolase A/B [EC:3.3.2.-]
D GYM46_09930 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D GYM46_11665 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D GYM46_12105 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D GYM46_05030 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D GYM46_04065 HK97 family phage prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D GYM46_08070 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D GYM46_05735 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GYM46_08770 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GYM46_06680 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_12980 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM46_14240 U32 family peptidase K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D GYM46_14235 U32 family peptidase K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D GYM46_12920 TldD/PmbA family protein K03592 pmbA; PmbA protein
D GYM46_10470 tldD; metalloprotease TldD K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:bmed01003]
D GYM46_14595 glycosyltransferase family 1 protein K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D GYM46_08530 glycosyltransferase family 1 protein K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
D GYM46_07225 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D GYM46_10150 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_13805 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_04470 WecB/TagA/CpsF family glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D GYM46_12200 mdoH; glucans biosynthesis glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D GYM46_08180 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:bmed01005]
D GYM46_14840 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GYM46_14850 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D GYM46_11720 UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D GYM46_14830 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D GYM46_06370 phosphatase PAP2 family protein K12978 lpxF; lipid A 4'-phosphatase [EC:3.1.3.-]
D GYM46_14845 lpxI; UDP-2,3-diacylglucosamine diphosphatase LpxI K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D GYM46_12875 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D GYM46_12025 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D GYM46_12880 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D GYM46_15350 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D GYM46_10260 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D GYM46_08165 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D GYM46_11330 glycosyltransferase family 9 protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D GYM46_07055 HAD family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D GYM46_15355 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D GYM46_15360 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bmed01011]
D GYM46_00780 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GYM46_11690 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GYM46_05035 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GYM46_11680 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GYM46_12165 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GYM46_12150 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GYM46_11700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM46_00250 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GYM46_09705 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D GYM46_05030 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D GYM46_12160 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GYM46_03680 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GYM46_05885 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM46_06695 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM46_07945 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D GYM46_10150 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_13805 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM46_16605 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GYM46_12145 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GYM46_07225 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D GYM46_13275 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB
D GYM46_16405 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D GYM46_02815 M15 family metallopeptidase K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D GYM46_12380 lytic transglycosylase domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D GYM46_15085 lytic transglycosylase domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D GYM46_07490 murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D GYM46_03180 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D GYM46_15680 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D GYM46_16535 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D GYM46_14065 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:bmed01004]
D GYM46_15655 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM46_16110 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GYM46_08115 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D GYM46_15675 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GYM46_08255 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_09595 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_12670 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_15665 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM46_08110 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D GYM46_14835 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D GYM46_09975 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D GYM46_11820 PaaI family thioesterase K17362 ACOT13; acyl-coenzyme A thioesterase 13 [EC:3.1.2.-]
D GYM46_08145 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D GYM46_15945 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM46_12335 long-chain-acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D GYM46_16115 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D GYM46_01155 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D GYM46_05990 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM46_13940 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:bmed01008]
D GYM46_09115 type III polyketide synthase K16167 bpsA; alkylresorcinol/alkylpyrone synthase
C 01006 Prenyltransferases [BR:bmed01006]
D GYM46_11940 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D GYM46_01780 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D GYM46_14800 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GYM46_01775 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D GYM46_16230 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GYM46_11125 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D GYM46_11155 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:bmed01007]
D GYM46_02595 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D GYM46_13085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14860 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_06110 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D GYM46_13830 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM46_07940 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GYM46_12995 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GYM46_12835 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM46_13150 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GYM46_12455 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GYM46_15615 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GYM46_07385 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM46_01220 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM46_08060 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GYM46_12415 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GYM46_12420 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GYM46_00045 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GYM46_14745 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GYM46_08645 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GYM46_08445 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GYM46_05620 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GYM46_05605 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GYM46_00005 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM46_15910 LL-diaminopimelate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D GYM46_06000 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM46_03190 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GYM46_16195 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D GYM46_06155 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GYM46_16440 D-amino-acid transaminase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GYM46_11770 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM46_03980 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450 [BR:bmed00199]
D GYM46_02230 cytochrome P450 K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
D GYM46_08815 cytochrome P450 K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
C 00194 Photosynthesis proteins [BR:bmed00194]
D GYM46_09550 ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GYM46_09540 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D GYM46_09535 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GYM46_09530 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D GYM46_09525 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D GYM46_12760 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GYM46_12765 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GYM46_12755 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D GYM46_12750 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GYM46_12745 F0F1 ATP synthase assembly protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:bmed03000]
D GYM46_06510 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM46_08660 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D GYM46_11500 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GYM46_03430 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GYM46_13575 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GYM46_09500 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D GYM46_01015 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D GYM46_01200 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM46_04780 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM46_04915 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM46_11965 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM46_12235 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM46_15850 UTRA domain-containing protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D GYM46_10095 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D GYM46_04185 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM46_08540 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM46_09840 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM46_10120 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D GYM46_10065 MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D GYM46_12545 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D GYM46_02135 helix-turn-helix domain-containing protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D GYM46_09190 helix-turn-helix domain-containing protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D GYM46_07540 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYM46_02155 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D GYM46_09900 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D GYM46_12595 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D GYM46_14175 cyclic nucleotide-binding domain-containing protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
D GYM46_14380 cyclic nucleotide-binding domain-containing protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
D GYM46_14200 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D GYM46_00450 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D GYM46_14265 Crp/Fnr family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D GYM46_13880 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D GYM46_02270 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM46_04860 helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM46_08750 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM46_09240 helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM46_09590 helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM46_01875 helix-turn-helix transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D GYM46_12690 winged helix-turn-helix transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D GYM46_03235 DUF2083 domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D GYM46_02965 DUF2083 domain-containing protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D GYM46_10555 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GYM46_11140 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GYM46_11465 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GYM46_03245 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM46_14710 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D GYM46_09355 ImmA/IrrE family metallo-endopeptidase K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D GYM46_08035 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D GYM46_11385 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D GYM46_13310 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D GYM46_10305 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D GYM46_11110 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D GYM46_11495 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D GYM46_08545 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GYM46_02040 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GYM46_09055 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GYM46_10665 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GYM46_14080 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D GYM46_02310 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_07405 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_09135 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_10535 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D GYM46_07115 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D GYM46_05210 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D GYM46_02315 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein
D GYM46_09320 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein
D GYM46_11230 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D GYM46_13070 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D GYM46_16175 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D GYM46_12130 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:bmed03021]
D GYM46_13560 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GYM46_14010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GYM46_14015 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GYM46_15120 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D GYM46_05010 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D GYM46_05440 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM46_09865 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM46_04550 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM46_00330 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM46_13745 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM46_02095 sigma-70 family RNA polymerase sigma factor K24073 cnrH; RNA polymerase sigma factor CnrH
D GYM46_09010 RNA polymerase sigma factor K24073 cnrH; RNA polymerase sigma factor CnrH
D GYM46_03965 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D GYM46_04440 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D GYM46_06845 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D GYM46_16150 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D GYM46_00115 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D GYM46_13070 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D GYM46_11600 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D GYM46_07435 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:bmed03019]
D GYM46_14060 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D GYM46_15150 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GYM46_14720 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D GYM46_01410 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GYM46_11075 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GYM46_04945 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D GYM46_06340 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM46_16345 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM46_07100 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GYM46_07435 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D GYM46_07895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM46_07660 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM46_16435 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D GYM46_01235 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GYM46_10475 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D GYM46_02845 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D GYM46_09740 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D GYM46_15040 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:bmed03011]
D GYM46_10430 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D GYM46_14780 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D GYM46_13465 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D GYM46_11015 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D GYM46_13520 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D GYM46_00210 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D GYM46_14035 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D GYM46_13505 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D GYM46_15505 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D GYM46_13430 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D GYM46_13555 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D GYM46_14030 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D GYM46_13550 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D GYM46_13500 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D GYM46_07095 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D GYM46_09945 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D GYM46_13480 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D GYM46_00215 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D GYM46_13455 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D GYM46_04735 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D GYM46_13200 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GYM46_00105 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D GYM46_13450 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D GYM46_13435 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D GYM46_13440 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D GYM46_13495 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D GYM46_13510 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D GYM46_00220 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D GYM46_00075 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D GYM46_00110 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D GYM46_00070 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D GYM46_15500 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D GYM46_13485 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D GYM46_13530 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D GYM46_13470 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D GYM46_13565 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D GYM46_13515 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D GYM46_08320 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D GYM46_05635 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D GYM46_05955 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D GYM46_13460 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D GYM46_13445 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D GYM46_13490 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D GYM46_05950 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D GYM46_10520 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D GYM46_13475 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D GYM46_13525 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D GYM46_13280 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D GYM46_16355 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D GYM46_01430 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D GYM46_06755 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D GYM46_05640 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D GYM46_03170 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D GYM46_01660 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D GYM46_12520 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM46_04810 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM46_12500 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM46_04830 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM46_04815 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM46_12515 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:bmed03009]
D GYM46_15150 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GYM46_15155 GTPase Era K03595 era; GTPase
D GYM46_09820 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D GYM46_13070 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D GYM46_06845 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D GYM46_16150 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D GYM46_00115 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D GYM46_05875 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D GYM46_15700 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D GYM46_02340 RsmB/NOP family class I SAM-dependent RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GYM46_07165 methyltransferase domain-containing protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GYM46_05880 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D GYM46_13735 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D GYM46_11360 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D GYM46_07415 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GYM46_12135 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D GYM46_07310 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D GYM46_15620 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D GYM46_13175 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D GYM46_02360 RlmE family RNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D GYM46_09920 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D GYM46_15055 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D GYM46_13005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D GYM46_08735 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D GYM46_15630 class I SAM-dependent RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D GYM46_13730 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D GYM46_00160 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D GYM46_00180 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D GYM46_03955 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D GYM46_00150 rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D GYM46_07535 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D GYM46_11210 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D GYM46_09950 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D GYM46_13975 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D GYM46_14060 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D GYM46_01125 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D GYM46_04945 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D GYM46_16090 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D GYM46_00305 ribosome biogenesis GTPase Der K03977 engA; GTPase
D GYM46_16430 hflX; GTPase HflX K03665 hflX; GTPase
D GYM46_15285 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D GYM46_15125 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D GYM46_07085 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D GYM46_06850 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D GYM46_09915 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D GYM46_07555 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D GYM46_04435 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
D GYM46_01690 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:bmed03016]
D GYM46_02500 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D GYM46_13085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14860 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14745 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GYM46_12455 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GYM46_07385 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM46_13150 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GYM46_12835 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM46_01220 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM46_08445 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GYM46_08645 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GYM46_00045 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GYM46_12995 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GYM46_15615 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GYM46_08060 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GYM46_05620 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GYM46_05605 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GYM46_13830 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM46_07940 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GYM46_00370 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GYM46_06880 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D GYM46_08125 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D GYM46_07090 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D GYM46_13885 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM46_15285 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D GYM46_16230 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GYM46_07425 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D GYM46_07420 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GYM46_14115 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GYM46_10185 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D GYM46_06750 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D GYM46_12125 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D GYM46_07110 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D GYM46_01245 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D GYM46_04460 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D GYM46_08705 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D GYM46_02595 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D GYM46_12415 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GYM46_12420 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GYM46_06110 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D GYM46_06015 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D GYM46_07845 prolyl-tRNA synthetase associated domain-containing protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D GYM46_13725 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D GYM46_04925 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D GYM46_16455 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D GYM46_07545 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D GYM46_10945 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D GYM46_01770 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D GYM46_08325 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D GYM46_01735 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D GYM46_15050 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D GYM46_02465 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GYM46_16475 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D GYM46_13930 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D GYM46_12675 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D GYM46_12320 mnmC; FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D GYM46_02605 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D GYM46_02550 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D GYM46_02540 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM46_14225 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM46_02545 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GYM46_01370 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D GYM46_05915 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D GYM46_02615 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D GYM46_05235 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D GYM46_07530 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D GYM46_04635 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D GYM46_05800 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D GYM46_01410 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GYM46_07100 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GYM46_03595 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D GYM46_05015 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:bmed03012]
D GYM46_06835 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D GYM46_05655 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D GYM46_01300 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D GYM46_14785 elongation factor Ts K02357 tsf; elongation factor Ts
D GYM46_13190 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM46_14045 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM46_14040 fusA; elongation factor G K02355 fusA; elongation factor G
D GYM46_06430 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D GYM46_14795 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D GYM46_05545 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D GYM46_01665 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D GYM46_00765 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D GYM46_13300 efp; elongation factor P K02356 efp; elongation factor P
D GYM46_13810 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D GYM46_10370 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D GYM46_06915 arfB; aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:bmed03110]
D GYM46_01490 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D GYM46_05555 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D GYM46_14560 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D GYM46_05530 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D GYM46_07895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM46_12075 Hsp70 family protein K04046 yegD; hypothetical chaperone protein
D GYM46_07660 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM46_07890 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D GYM46_13380 J domain-containing protein K05516 cbpA; curved DNA-binding protein
D GYM46_01620 Hsp33 family molecular chaperone K04083 hslO; molecular chaperone Hsp33
D GYM46_07120 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D GYM46_00495 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM46_09745 Hsp20 family protein K04080 ibpA; molecular chaperone IbpA
D GYM46_10550 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D GYM46_07665 co-chaperone GroES K04078 groES; chaperonin GroES
D GYM46_04580 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_08760 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D GYM46_05230 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D GYM46_12750 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GYM46_15440 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D GYM46_07480 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D GYM46_01685 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A
D GYM46_14900 rotamase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D GYM46_14000 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D GYM46_05920 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D GYM46_08010 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D GYM46_14345 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D GYM46_15710 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D GYM46_05825 trxA; thioredoxin K03671 TXN; thioredoxin
D GYM46_08370 co-chaperone YbbN K05838 ybbN; putative thioredoxin
D GYM46_07980 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D GYM46_11040 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D GYM46_09460 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:bmed04131]
D GYM46_01285 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GYM46_06705 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D GYM46_03930 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM46_04695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GYM46_12645 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:bmed03032]
D GYM46_15385 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D GYM46_06510 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM46_04500 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GYM46_14580 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GYM46_16105 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D GYM46_10435 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D GYM46_04740 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GYM46_00240 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D GYM46_05025 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D GYM46_02750 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09155 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_14765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM46_04745 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM46_15735 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GYM46_07395 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM46_16525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM46_07475 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM46_10245 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM46_12660 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D GYM46_07025 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM46_00685 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GYM46_02715 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D GYM46_04755 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D GYM46_15245 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GYM46_15310 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GYM46_01165 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D GYM46_13000 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:bmed03036]
D GYM46_06510 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM46_15150 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GYM46_09140 methylase K26273 SBNO; protein strawberry notch
D GYM46_04500 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GYM46_14580 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GYM46_16105 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D GYM46_10435 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D GYM46_13380 J domain-containing protein K05516 cbpA; curved DNA-binding protein
D GYM46_04740 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GYM46_02685 hspQ; heat shock protein HspQ K11940 hspQ; heat shock protein HspQ
D GYM46_11560 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D GYM46_15020 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D GYM46_16435 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D GYM46_04185 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM46_08540 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM46_09840 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM46_03660 AAA family ATPase K03529 smc; chromosome segregation protein
D GYM46_12730 segregation/condensation protein A K05896 scpA; segregation and condensation protein A
D GYM46_12735 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D GYM46_11710 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D GYM46_05975 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D GYM46_12145 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GYM46_07335 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D GYM46_12140 cell division protein K03586 ftsL; cell division protein FtsL
D GYM46_11705 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D GYM46_12170 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D GYM46_05980 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D GYM46_11715 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GYM46_03615 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA
D GYM46_09575 cell division protein ZapE K06916 zapE; cell division protein ZapE
D GYM46_14065 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM46_01540 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM46_16620 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D GYM46_16615 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D GYM46_16600 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D GYM46_07410 ParA family protein K03496 parA; chromosome partitioning protein
D GYM46_13115 AAA family ATPase K03496 parA; chromosome partitioning protein
D GYM46_02310 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_07405 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_09135 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_15245 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GYM46_15310 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GYM46_07420 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GYM46_07415 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GYM46_01770 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D GYM46_08265 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D GYM46_13700 tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D GYM46_16225 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D GYM46_06740 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:bmed03400]
D GYM46_11505 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D GYM46_15345 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D GYM46_03640 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D GYM46_10115 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D GYM46_08000 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GYM46_11895 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GYM46_07870 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D GYM46_09445 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D GYM46_07900 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D GYM46_12385 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D GYM46_15105 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D GYM46_06095 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GYM46_11500 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GYM46_12665 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D GYM46_06365 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D GYM46_02880 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GYM46_07345 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GYM46_15535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM46_00685 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GYM46_07025 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM46_01750 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D GYM46_11450 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D GYM46_03715 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D GYM46_16300 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GYM46_14010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GYM46_14015 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GYM46_13560 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GYM46_15120 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D GYM46_16490 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D GYM46_07760 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D GYM46_13770 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D GYM46_10645 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D GYM46_12855 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D GYM46_11930 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D GYM46_14765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM46_04745 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM46_15735 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GYM46_07395 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM46_16525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM46_07475 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM46_10245 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM46_02750 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09155 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_11240 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D GYM46_09640 recA; recombinase RecA K03553 recA; recombination protein RecA
D GYM46_05305 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D GYM46_05300 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D GYM46_05310 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D GYM46_08280 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D GYM46_00260 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D GYM46_04750 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D GYM46_16500 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GYM46_15175 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D GYM46_10280 recR; recombination protein RecR K06187 recR; recombination protein RecR
D GYM46_02925 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D GYM46_05820 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D GYM46_05815 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D GYM46_07510 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D GYM46_10815 Ku protein K10979 ku; DNA end-binding protein Ku
D GYM46_10810 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D GYM46_02715 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D GYM46_04755 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D GYM46_01165 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D GYM46_13000 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D GYM46_04500 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GYM46_14580 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GYM46_16105 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D GYM46_10435 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D GYM46_06340 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM46_01445 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D GYM46_12810 type VI secretion protein ImpB K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D GYM46_14870 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D GYM46_06585 hypothetical protein K14160 imuA; protein ImuA
D GYM46_06580 DNA polymerase Y family protein K14161 imuB; protein ImuB
D GYM46_06575 dnaE; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D GYM46_08900 hypothetical protein K03565 recX; regulatory protein
D GYM46_06020 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D GYM46_06025 ligase-associated DNA damage response DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D GYM46_01205 TSCPD domain-containing protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_06690 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_14410 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM46_06780 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:bmed03029]
D GYM46_06835 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D GYM46_05655 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D GYM46_14785 elongation factor Ts K02357 tsf; elongation factor Ts
D GYM46_13190 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM46_14045 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM46_14040 fusA; elongation factor G K02355 fusA; elongation factor G
D GYM46_16125 ubiquinol-cytochrome C chaperone K17662 CBP3; cytochrome b pre-mRNA-processing protein 3
D GYM46_10565 phosphonate-binding protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D GYM46_15155 GTPase Era K03595 era; GTPase
D GYM46_13830 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM46_07385 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM46_01220 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM46_12835 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM46_01110 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GYM46_01100 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D GYM46_01115 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D GYM46_02750 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09155 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D GYM46_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM46_14820 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D GYM46_07895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM46_07120 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D GYM46_07660 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM46_07665 co-chaperone GroES K04078 groES; chaperonin GroES
D GYM46_07890 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D GYM46_13885 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM46_11040 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D GYM46_11730 SAM-dependent methyltransferase K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
D GYM46_16225 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D GYM46_11155 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GYM46_11160 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D GYM46_15490 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM46_06745 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM46_11180 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D GYM46_16560 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D GYM46_10365 SCO family protein K07152 SCO1; protein SCO1
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:bmed02000]
D GYM46_12890 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D GYM46_13675 ATP-binding cassette domain-containing protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D GYM46_13285 ATP-binding cassette domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D GYM46_12600 ATP-binding cassette domain-containing protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D GYM46_12605 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D GYM46_04105 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D GYM46_14390 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D GYM46_14395 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D GYM46_14400 modC; molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D GYM46_14275 ABC transporter substrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D GYM46_14280 ABC transporter permease K15577 nrtB; nitrate/nitrite transport system permease protein
D GYM46_14285 ATP-binding cassette domain-containing protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D GYM46_04130 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D GYM46_04140 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D GYM46_04135 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D GYM46_00360 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D GYM46_02420 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GYM46_02430 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GYM46_02425 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GYM46_02415 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D GYM46_01185 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D GYM46_01180 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D GYM46_01175 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D GYM46_09985 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GYM46_01645 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D GYM46_01640 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D GYM46_01635 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D GYM46_09995 phnD; phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D GYM46_09990 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D GYM46_10000 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D GYM46_15325 amino acid ABC transporter substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D GYM46_15070 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D GYM46_15075 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D GYM46_15080 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D GYM46_08615 ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein
D GYM46_08610 chain-length determining protein K10107 kpsE; capsular polysaccharide transport system permease protein
D GYM46_08605 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D GYM46_15725 LptF/LptG family permease K07091 lptF; lipopolysaccharide export system permease protein
D GYM46_15720 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D GYM46_04445 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D GYM46_13320 ABC transporter ATP-binding protein K20459 nukF; lantibiotic transport system ATP-binding protein
D GYM46_13325 ABC transporter permease subunit K20461 nukG; lantibiotic transport system permease protein
D GYM46_14750 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D GYM46_14755 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GYM46_09465 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D GYM46_09470 ccsA; cytochrome c biogenesis protein CcsA K02195 ccmC; heme exporter protein C
D GYM46_09475 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D GYM46_09480 ccmA; heme ABC exporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D GYM46_05980 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D GYM46_05975 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D GYM46_04615 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D GYM46_06300 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D GYM46_13205 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D GYM46_13580 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein
D GYM46_04610 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GYM46_07045 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GYM46_13210 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GYM46_13585 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GYM46_03765 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM46_00435 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM46_03760 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM46_00440 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM46_13910 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D GYM46_12585 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D GYM46_13145 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D GYM46_03825 sugar MFS transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D GYM46_15770 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D GYM46_14370 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GYM46_14375 NarK/NasA family nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GYM46_08340 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D GYM46_06320 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D GYM46_03490 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GYM46_13955 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GYM46_10100 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GYM46_15380 MFS transporter K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D GYM46_06390 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D GYM46_07790 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D GYM46_07795 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GYM46_04430 ptsN; PTS IIA-like nitrogen regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D GYM46_07295 two pore domain potassium channel family protein K10716 kch; voltage-gated potassium channel
D GYM46_03880 ammonium transporter K03320 amt; ammonium transporter, Amt family
D GYM46_04415 ammonium transporter K03320 amt; ammonium transporter, Amt family
D GYM46_05900 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_06440 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_10075 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_11610 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_12370 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_00080 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GYM46_10910 DUF3520 domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D GYM46_10440 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D GYM46_13665 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel
D GYM46_00835 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D GYM46_12330 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D GYM46_15255 OmpA family protein K02557 motB; chemotaxis protein MotB
D GYM46_00740 flagellar motor protein MotA K03561 exbB; biopolymer transport protein ExbB
D GYM46_12985 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D GYM46_00735 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D GYM46_05280 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D GYM46_05275 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D GYM46_09720 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D GYM46_00165 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D GYM46_02130 MFS transporter permease K08363 merT; mercuric ion transport protein
D GYM46_00130 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GYM46_12430 porin family protein K16079 omp31; outer membrane immunogenic protein
D GYM46_04710 porin K07221 oprO_P; phosphate-selective porin OprO and OprP
D GYM46_05690 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D GYM46_07255 outer membrane beta-barrel protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D GYM46_11070 long-chain fatty acid transporter K06076 fadL; long-chain fatty acid transport protein
D GYM46_15445 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GYM46_01605 autotransporter domain-containing esterase K12686 apeE; outer membrane lipase/esterase
D GYM46_05080 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D GYM46_07755 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D GYM46_01700 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D GYM46_14980 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D GYM46_01675 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_01985 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_04245 TonB-dependent receptor plug domain-containing protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_04895 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_05070 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_05680 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_06485 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_06795 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_09230 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_10335 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_10795 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_11405 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_11455 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_11645 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_11960 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_12245 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_12280 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_12300 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_12695 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_14260 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_15000 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_15475 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_00225 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_00355 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_00595 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_00935 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_00950 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_01010 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM46_02200 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D GYM46_06600 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D GYM46_08850 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D GYM46_08945 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D GYM46_09070 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D GYM46_16040 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_03805 TolC family protein K18300 oprN; outer membrane protein, multidrug efflux system
D GYM46_01075 polysaccharide export protein K20987 pslD; polysaccharide biosynthesis/export protein PslD
D GYM46_08155 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D GYM46_04180 porin K07267 oprB; porin
D GYM46_14820 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D GYM46_00310 PQQ-binding-like beta-propeller repeat protein K17713 bamB; outer membrane protein assembly factor BamB
D GYM46_02940 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D GYM46_02650 outer membrane protein assembly factor K07278 tamA; translocation and assembly module TamA
D GYM46_02655 DUF490 domain-containing protein K09800 tamB; translocation and assembly module TamB
D GYM46_04450 LPS ABC transporter substrate-binding protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D GYM46_04455 LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D GYM46_15715 LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D GYM46_07390 hypothetical protein K03643 lptE; LPS-assembly lipoprotein
D GYM46_13985 CidA/LrgA family protein K06518 cidA; holin-like protein
D GYM46_03865 SLC45 family MFS transporter K16211 malY; maltose/moltooligosaccharide transporter
D GYM46_16410 MFS transporter K16248 gutA; probable glucitol transport protein GutA
D GYM46_00795 amino acid permease K03759 adiC; arginine:agmatine antiporter
D GYM46_02185 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D GYM46_08870 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D GYM46_09700 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D GYM46_05895 cation transporter K13283 fieF; ferrous-iron efflux pump FieF
D GYM46_04385 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family
D GYM46_02190 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D GYM46_06610 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D GYM46_08860 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D GYM46_09080 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D GYM46_08935 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein
D GYM46_01535 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM46_04095 multidrug efflux SMR transporter K03297 emrE; small multidrug resistance pump
D GYM46_05195 multidrug efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D GYM46_02730 DMT family transporter K15268 eamA; O-acetylserine/cysteine efflux transporter
D GYM46_04190 DMT family transporter K11939 rhtA; inner membrane transporter RhtA
D GYM46_09565 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D GYM46_03710 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D GYM46_05565 BCCT family transporter K02168 betT; choline/glycine/proline betaine transport protein
D GYM46_04715 dicarboxylate/amino acid:cation symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D GYM46_11400 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D GYM46_16425 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D GYM46_10920 potassium transporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D GYM46_08050 potassium transporter TrkA K03455 KEA1_2_3; K+:H+ antiporter
D GYM46_09970 benE; benzoate/H(+) symporter BenE family transporter K05782 benE; benzoate membrane transport protein
D GYM46_14445 chrA; chromate efflux transporter K07240 chrA; chromate transporter
D GYM46_13040 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D GYM46_04770 divalent metal cation transporter K03322 mntH; manganese transport protein
D GYM46_02260 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D GYM46_02275 arsenic resistance protein K03325 ACR3; arsenite transporter
D GYM46_04850 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D GYM46_09215 arsenic resistance protein K03325 ACR3; arsenite transporter
D GYM46_09250 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D GYM46_07945 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D GYM46_01130 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D GYM46_07170 potassium transporter Kup K03549 kup; KUP system potassium uptake protein
D GYM46_06815 LysE family translocator K05834 rhtB; homoserine/homoserine lactone efflux protein
D GYM46_10755 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D GYM46_12170 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D GYM46_06705 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D GYM46_02240 c-type cytochrome K07243 FTR; high-affinity iron transporter
D GYM46_08805 c-type cytochrome K07243 FTR; high-affinity iron transporter
D GYM46_09210 c-type cytochrome K07243 FTR; high-affinity iron transporter
D GYM46_09105 rcnA; nickel/cobalt efflux transporter RcnA K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D GYM46_14495 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D GYM46_01580 TonB family protein K03832 tonB; periplasmic protein TonB
D GYM46_02470 energy transducer TonB K03832 tonB; periplasmic protein TonB
D GYM46_09825 hypothetical protein K03832 tonB; periplasmic protein TonB
D GYM46_13545 energy transducer TonB K03832 tonB; periplasmic protein TonB
D GYM46_14990 TonB family protein K03832 tonB; periplasmic protein TonB
D GYM46_00730 energy transducer TonB K03832 tonB; periplasmic protein TonB
D GYM46_05250 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D GYM46_05255 tolB; Tol-Pal system protein TolB K03641 tolB; TolB protein
D GYM46_16135 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D GYM46_14365 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14360 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_14350 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D GYM46_10105 HlyD family secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system
D GYM46_02195 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM46_06605 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM46_08855 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM46_09075 HlyD family efflux transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM46_16035 HlyD family efflux transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM46_08940 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D GYM46_03815 efflux RND transporter periplasmic adaptor subunit K18901 bpeE; membrane fusion protein, multidrug efflux system
D GYM46_01865 efflux RND transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D GYM46_01540 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM46_01525 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D GYM46_01520 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D GYM46_13305 tryptophan-rich sensory protein K05770 TSPO; translocator protein
D GYM46_08335 entericidin A/B family lipoprotein K16348 ecnB; entericidin B
D GYM46_09855 entericidin A/B family lipoprotein K16348 ecnB; entericidin B
D GYM46_04590 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D GYM46_05315 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D GYM46_02060 copD; copper homeostasis membrane protein CopD K07245 pcoD; copper resistance protein D
D GYM46_08960 copD; copper homeostasis membrane protein CopD K07245 pcoD; copper resistance protein D
D GYM46_02055 copC; copper homeostasis periplasmic binding protein CopC K07156 copC; copper resistance protein C
D GYM46_02110 copper resistance protein CopC K07156 copC; copper resistance protein C
D GYM46_08955 copC; copper homeostasis periplasmic binding protein CopC K07156 copC; copper resistance protein C
D GYM46_09020 copper resistance protein CopC K07156 copC; copper resistance protein C
D GYM46_05995 MipA/OmpV family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:bmed02044]
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_00660 general secretion pathway protein K02452 gspC; general secretion pathway protein C
D GYM46_00655 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D GYM46_00650 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D GYM46_00645 gspF; type II secretion system inner membrane protein GspF K02455 gspF; general secretion pathway protein F
D GYM46_00640 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G
D GYM46_00635 type II secretion system protein GspH K02457 gspH; general secretion pathway protein H
D GYM46_00630 gspI; type II secretion system minor pseudopilin GspI K02458 gspI; general secretion pathway protein I
D GYM46_00625 gspJ; type II secretion system minor pseudopilin GspJ K02459 gspJ; general secretion pathway protein J
D GYM46_00620 gspK; type II secretion system minor pseudopilin GspK K02460 gspK; general secretion pathway protein K
D GYM46_00615 hypothetical protein K02461 gspL; general secretion pathway protein L
D GYM46_00610 type II secretion system protein M K02462 gspM; general secretion pathway protein M
D GYM46_01515 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D GYM46_06195 pilus assembly protein CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GYM46_06200 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D GYM46_06205 type II and III secretion system protein family protein K02280 cpaC; pilus assembly protein CpaC
D GYM46_06210 pilus assembly protein CpaD K02281 cpaD; pilus assembly protein CpaD
D GYM46_06215 pilus assembly protein CpaE K02282 cpaE; pilus assembly protein CpaE
D GYM46_06220 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GYM46_06225 type II secretion system F family protein K12510 tadB; tight adherence protein B
D GYM46_06230 type II secretion system F family protein K12511 tadC; tight adherence protein C
D GYM46_06190 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D GYM46_07995 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D GYM46_08210 YggT family protein K02221 yggT; YggT family protein
D GYM46_14865 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC
D GYM46_11870 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D GYM46_10210 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D GYM46_11840 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D GYM46_11850 flagellar assembly protein FlbE K02411 fliH; flagellar assembly protein FliH
D GYM46_04195 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D GYM46_11855 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_00825 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_04490 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D GYM46_04495 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D GYM46_10220 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D GYM46_10215 fliR; flagellar type III secretion system protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D GYM46_03090 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D GYM46_09185 trbB; P-type conjugative transfer ATPase TrbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D GYM46_09265 conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC
D GYM46_09270 conjugal transfer protein K20529 trbD; type IV secretion system protein TrbD
D GYM46_09275 conjugal transfer protein TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D GYM46_09290 conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF
D GYM46_09295 TrbG/VirB9 family P-type conjugative transfer protein K20532 trbG; type IV secretion system protein TrbG
D GYM46_09300 TrbI/VirB10 family protein K20533 trbI; type IV secretion system protein TrbI
D GYM46_09280 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ
D GYM46_09285 trbL; P-type conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL
D GYM46_01605 autotransporter domain-containing esterase K12686 apeE; outer membrane lipase/esterase
D GYM46_15440 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D GYM46_15445 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GYM46_08015 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM46_07480 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D GYM46_00020 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D GYM46_00120 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM46_00015 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D GYM46_14910 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM46_13535 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM46_09940 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM46_10055 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM46_00025 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM46_06745 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM46_15390 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D GYM46_15395 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D GYM46_15400 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:bmed02042]
D GYM46_00130 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GYM46_01940 hemolysin III family protein K11068 hlyIII; hemolysin III
D GYM46_07625 hemolysin III family protein K11068 hlyIII; hemolysin III
D GYM46_03275 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GYM46_15470 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:bmed02022]
D GYM46_01650 PAS domain-containing protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM46_01625 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D GYM46_11760 HAMP domain-containing protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GYM46_11765 response regulator transcription factor K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GYM46_10685 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GYM46_10680 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GYM46_06560 HAMP domain-containing histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D GYM46_07805 HAMP domain-containing protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D GYM46_07810 response regulator transcription factor K14981 chvI; two-component system, OmpR family, response regulator ChvI
D GYM46_10760 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GYM46_04215 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D GYM46_04575 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D GYM46_05420 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D GYM46_05465 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D GYM46_06565 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D GYM46_16450 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D GYM46_16445 sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D GYM46_04720 sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GYM46_04725 sigma-54-dependent Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D GYM46_06065 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_10595 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_06070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10195 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10590 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10615 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_12030 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_06040 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10610 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10505 GAF domain-containing protein K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D GYM46_10675 PAS domain S-box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D GYM46_04275 HAMP domain-containing histidine kinase K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D GYM46_01435 PleD family two-component system response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D GYM46_01440 response regulator K11443 divK; two-component system, cell cycle response regulator DivK
D GYM46_16485 diguanylate cyclase K13591 popA; two-component system, cell cycle response regulator PopA
D GYM46_10205 response regulator K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D GYM46_04225 response regulator transcription factor K13584 ctrA; two-component system, cell cycle response regulator CtrA
D GYM46_05490 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR
D GYM46_10575 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_10855 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_14190 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_00455 PAS domain S-box protein K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D GYM46_10570 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D GYM46_14185 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D GYM46_00460 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D GYM46_11860 sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D GYM46_10360 ActS/PrrB/RegB family redox-sensitive histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GYM46_16555 HAMP domain-containing histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GYM46_10355 ActR/PrrA/RegA family redox response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D GYM46_16550 response regulator transcription factor K15012 regA; two-component system, response regulator RegA
D GYM46_02555 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_05630 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_06080 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_06800 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_11350 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_14085 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_00350 response regulator K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D GYM46_04120 DUF4118 domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D GYM46_03970 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
D GYM46_11575 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
D GYM46_14300 ABC transporter substrate-binding protein K22067 nasS; two-component system, oxyanion-binding sensor
D GYM46_14295 ANTAR domain-containing protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
C 02035 Bacterial motility proteins [BR:bmed02035]
D GYM46_06065 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_10595 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GYM46_06050 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_06060 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10230 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10600 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_11225 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GYM46_10585 STAS domain-containing protein K03409 cheX; chemotaxis protein CheX
D GYM46_10485 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GYM46_10620 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GYM46_15015 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GYM46_06045 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_10200 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_10605 protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GYM46_06040 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_10610 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GYM46_06070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10195 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10590 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_10615 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_12030 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GYM46_04175 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_04705 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_04960 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06055 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06870 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_06875 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_07765 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10125 PAS domain S-box protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10225 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10580 HAMP domain-containing protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_10845 globin-coupled sensor protein K03406 mcp; methyl-accepting chemotaxis protein
D GYM46_11850 flagellar assembly protein FlbE K02411 fliH; flagellar assembly protein FliH
D GYM46_04195 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D GYM46_04200 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D GYM46_04490 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D GYM46_04495 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D GYM46_10220 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D GYM46_10215 fliR; flagellar type III secretion system protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D GYM46_11870 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D GYM46_10210 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D GYM46_11845 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D GYM46_03355 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D GYM46_11855 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_00825 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D GYM46_11840 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D GYM46_13060 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D GYM46_03375 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D GYM46_03380 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D GYM46_03360 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D GYM46_04475 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D GYM46_02445 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D GYM46_04485 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D GYM46_04480 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D GYM46_02450 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D GYM46_03365 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D GYM46_03370 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D GYM46_13055 rod-binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D GYM46_02455 flagellar hook-basal body complex protein K02390 flgE; flagellar hook protein FlgE
D GYM46_02440 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D GYM46_02435 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D GYM46_02770 flagellin K02406 fliC; flagellin
D GYM46_02780 flagellin K02406 fliC; flagellin
D GYM46_02785 flagellin K02406 fliC; flagellin
D GYM46_02790 flagellin K02406 fliC; flagellin
D GYM46_02795 flagellin K02406 fliC; flagellin
D GYM46_02800 flagellin K02406 fliC; flagellin
D GYM46_12330 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D GYM46_15255 OmpA family protein K02557 motB; chemotaxis protein MotB
D GYM46_11860 sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D GYM46_00860 flaF; flagellar biosynthesis regulator FlaF K06602 flaF; flagellar biosynthesis activator protein FlaF
D GYM46_00865 flbT; flagellar biosynthesis repressor FlbT K06601 flbT; flagellar biosynthesis repressor protein FlbT
D GYM46_01515 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D GYM46_06190 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D GYM46_07995 Flp family type IVb pilin K02651 flp; pilus assembly protein Flp/PilA
D GYM46_06195 pilus assembly protein CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GYM46_06200 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D GYM46_06205 type II and III secretion system protein family protein K02280 cpaC; pilus assembly protein CpaC
D GYM46_06210 pilus assembly protein CpaD K02281 cpaD; pilus assembly protein CpaD
D GYM46_06215 pilus assembly protein CpaE K02282 cpaE; pilus assembly protein CpaE
D GYM46_06220 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GYM46_15440 fimbria/pilus periplasmic chaperone K07346 fimC; fimbrial chaperone protein
D GYM46_15445 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:bmed04812]
D GYM46_16620 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D GYM46_05320 hypothetical protein K18642 creS; crescentin
D GYM46_11715 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GYM46_11710 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D GYM46_07410 ParA family protein K03496 parA; chromosome partitioning protein
D GYM46_13115 AAA family ATPase K03496 parA; chromosome partitioning protein
D GYM46_02310 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_07405 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM46_09135 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:bmed04147]
D GYM46_16345 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM46_03930 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM46_03940 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GYM46_12645 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM46_13035 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM46_01885 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D GYM46_02000 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D GYM46_07660 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM46_07895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM46_07685 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM46_14485 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D GYM46_16595 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_00585 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM46_02350 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D GYM46_13190 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM46_14045 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM46_00370 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GYM46_12585 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D GYM46_05695 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_09650 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_10895 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM46_07230 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D GYM46_07830 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GYM46_13540 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D GYM46_09680 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GYM46_06720 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GYM46_01400 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D GYM46_12800 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM46_07270 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D GYM46_15410 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM46_14935 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D GYM46_05725 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GYM46_06940 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D GYM46_06955 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GYM46_01610 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM46_07140 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GYM46_02235 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_07770 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_08810 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_16315 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM46_06975 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D GYM46_05150 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GYM46_14905 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM46_04695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GYM46_08245 lipocalin K03098 APOD; apolipoprotein D and lipocalin family protein
D GYM46_08695 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
D GYM46_12345 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:bmed02048]
D GYM46_03140 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D GYM46_03145 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D GYM46_03150 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM46_08965 type II restriction endonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D GYM46_03635 DNA modification methylase K13581 ccrM; modification methylase [EC:2.1.1.72]
D GYM46_12650 DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D GYM46_06510 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM46_06645 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5]
D GYM46_06640 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D GYM46_12400 transcriptional regulator K19156 prlF; antitoxin PrlF
D GYM46_03445 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D GYM46_03440 antitoxin K18923 stbD; antitoxin StbD
D GYM46_09390 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM46_06105 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D GYM46_11295 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D GYM46_14470 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D GYM46_06100 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
D GYM46_11300 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
D GYM46_12215 plasmid maintenance system killer K07334 higB-1; toxin HigB-1
D GYM46_13780 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D GYM46_09355 ImmA/IrrE family metallo-endopeptidase K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D GYM46_12210 HigA family addiction module antidote protein K21498 higA-1; antitoxin HigA-1
D GYM46_13785 HigA family addiction module antidote protein K21498 higA-1; antitoxin HigA-1
D GYM46_03595 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D GYM46_05015 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D GYM46_03600 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB
D GYM46_05020 hypothetical protein K18829 mvpT; antitoxin VapB
D GYM46_03540 type II toxin-antitoxin system VapC family toxin K19686 vapC; ribonuclease VapC [EC:3.1.-.-]
D GYM46_13075 type II toxin-antitoxin system VapC family toxin K19686 vapC; ribonuclease VapC [EC:3.1.-.-]
D GYM46_03545 type II toxin-antitoxin system VapB family antitoxin K19687 vapB; antitoxin VapB
D GYM46_13080 type II toxin-antitoxin system VapB family antitoxin K19687 vapB; antitoxin VapB
D GYM46_09145 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D GYM46_12825 hypothetical protein K21495 fitA; antitoxin FitA
D GYM46_11715 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GYM46_16620 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D GYM46_15245 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GYM46_15310 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GYM46_13085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_14860 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM46_16495 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
D GYM46_13885 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:bmed04090]
D GYM46_14485 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D GYM46_07230 M2 family metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
C 01504 Antimicrobial resistance genes [BR:bmed01504]
D GYM46_03250 peptidase M56 K02172 blaR1; bla regulator protein blaR1
D GYM46_03245 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM46_11865 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D GYM46_16405 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D GYM46_09805 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D GYM46_01540 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM46_01535 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM46_03805 TolC family protein K18300 oprN; outer membrane protein, multidrug efflux system
D GYM46_10095 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D GYM46_01865 efflux RND transporter periplasmic adaptor subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D GYM46_09190 helix-turn-helix domain-containing protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D GYM46_01845 TolC family protein K12340 tolC; outer membrane protein
D GYM46_15605 TolC family outer membrane protein K12340 tolC; outer membrane protein
D GYM46_03815 efflux RND transporter periplasmic adaptor subunit K18901 bpeE; membrane fusion protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:bmed00537]
D GYM46_06955 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GYM46_13035 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:bmed03100]
D GYM46_10400 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_04820 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_08215 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_12510 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM46_10640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_06675 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_06950 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_15565 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM46_15575 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GYM46_14600 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GYM46_14605 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GYM46_15595 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D GYM46_14965 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D GYM46_04350 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM46_15540 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM46_13185 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM46_08790 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM46_10320 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM46_00725 tRNA-His K14226 tRNA-His; tRNA His
D GYM46_04825 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GYM46_12505 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GYM46_15030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_05760 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_04465 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_03330 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_00830 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM46_14455 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM46_02635 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM46_12525 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM46_04805 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM46_09665 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM46_12090 tRNA-Ile K14230 tRNA-Met; tRNA Met
D GYM46_00745 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D GYM46_15555 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM46_14960 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM46_16095 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM46_01035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_16540 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_00900 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_12230 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM46_04650 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM46_00790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM46_00375 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM46_00125 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D GYM46_13180 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D GYM46_14585 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM46_15900 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM46_05485 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM46_12500 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM46_04830 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM46_04815 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM46_12515 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM46_12520 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM46_04810 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM46_10250 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D GYM46_12125 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D GYM46_16235 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D GYM46_09660 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D GYM46_06895 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D GYM46_10180 NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D GYM46_02900 saccharopine dehydrogenase family protein K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D GYM46_12390 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D GYM46_08775 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GYM46_13260 NAD(P)H-quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GYM46_13860 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D GYM46_12225 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D GYM46_14760 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D GYM46_15515 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D GYM46_00810 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D GYM46_09960 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D GYM46_01085 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D GYM46_10775 oxidase K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D GYM46_14205 oxidase K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D GYM46_02480 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D GYM46_01935 manganese catalase family protein K07217 ydbD; manganese catalase [EC:1.11.1.6]
D GYM46_12535 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D GYM46_13825 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GYM46_13855 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D GYM46_13800 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D GYM46_08420 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GYM46_15755 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GYM46_08295 carotenoid oxygenase K00464 diox1; all-trans-8'-apo-beta-carotenal 15,15'-oxygenase [EC:1.13.11.75]
D GYM46_05075 Fe2+-dependent dioxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D GYM46_08745 acyl-CoA desaturase K23054 desC; sn-1 stearoyl-lipid 9-desaturase [EC:1.14.19.28]
D GYM46_14480 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D GYM46_02265 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D GYM46_04855 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D GYM46_09245 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D GYM46_14155 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D GYM46_04300 SDR family NAD(P)-dependent oxidoreductase K14189 dltE; uncharacterized oxidoreductase [EC:1.-.-.-]
D GYM46_15600 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D GYM46_00035 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D GYM46_02395 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D GYM46_05960 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D GYM46_15340 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D GYM46_00410 putrescine carbamoyltransferase K13252 ptcA; putrescine carbamoyltransferase [EC:2.1.3.6]
D GYM46_11915 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D GYM46_16365 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D GYM46_12445 beta-ketoacyl-ACP synthase III K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D GYM46_07560 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D GYM46_09510 glutaminyl-peptide cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D GYM46_01820 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D GYM46_15250 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D GYM46_10020 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D GYM46_11735 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D GYM46_05050 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D GYM46_07455 kinase/pyrophosphorylase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D GYM46_04560 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D GYM46_11395 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D GYM46_13390 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D GYM46_15870 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D GYM46_05290 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GYM46_05350 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GYM46_11035 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GYM46_06165 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D GYM46_11260 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D GYM46_16520 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D GYM46_04205 1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D GYM46_01990 glycosyl hydrolase family 53 K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D GYM46_01505 serine hydrolase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D GYM46_10480 serine hydrolase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D GYM46_12115 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM46_08140 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D GYM46_05625 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D GYM46_07975 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D GYM46_04885 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D GYM46_02895 carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127]
D GYM46_06735 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D GYM46_15420 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D GYM46_00525 HAD-IC family P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D GYM46_02150 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D GYM46_08895 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D GYM46_10540 ferredoxin family protein K05524 fdxA; ferredoxin
D GYM46_06980 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D GYM46_07365 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D GYM46_13715 GNAT family N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D GYM46_15315 O-antigen ligase family protein K16567 exoQ; exopolysaccharide production protein ExoQ
C 99987 Cofactor metabolism
D GYM46_06925 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D GYM46_14230 hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D GYM46_14610 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein
D GYM46_12575 ubiquinone biosynthesis protein K18586 COQ4; ubiquinone biosynthesis protein COQ4
D GYM46_13195 COQ9 family protein K18587 COQ9; ubiquinone biosynthesis protein COQ9
D GYM46_16375 type II toxin-antitoxin system RatA family toxin K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
D GYM46_00065 prolyl oligopeptidase family serine peptidase K03932 lpqC; polyhydroxybutyrate depolymerase
D GYM46_11190 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D GYM46_11800 DoxX family protein K15977 K15977; putative oxidoreductase
D GYM46_12440 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D GYM46_01385 cold-shock protein K03704 cspA; cold shock protein
D GYM46_10495 cold-shock protein K03704 cspA; cold shock protein
D GYM46_11200 cold-shock protein K03704 cspA; cold shock protein
D GYM46_15545 cold shock domain-containing protein K03704 cspA; cold shock protein
C 99974 Translation
D GYM46_00510 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein
D GYM46_02560 ligase-associated DNA damage response exonuclease K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D GYM46_01495 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D GYM46_14540 trigger factor K03545 tig; trigger factor
D GYM46_15095 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D GYM46_08350 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D GYM46_05085 peptidase K07395 K07395; putative proteasome-type protease
C 99976 Replication and repair
D GYM46_09125 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D GYM46_11060 JAB domain-containing protein K03630 radC; DNA repair protein RadC
D GYM46_10295 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D GYM46_07315 YraN family protein K07460 yraN; putative endonuclease
D GYM46_05550 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D GYM46_01160 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein
D GYM46_00185 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D GYM46_09130 hypothetical protein K06919 K06919; putative DNA primase/helicase
D GYM46_05345 IS110 family transposase K07486 K07486; transposase
D GYM46_05515 IS110 family transposase K07486 K07486; transposase
D GYM46_05540 IS110 family transposase K07486 K07486; transposase
D GYM46_11310 IS110 family transposase K07486 K07486; transposase
D GYM46_14515 IS110 family transposase K07486 K07486; transposase
D GYM46_15585 IS110 family transposase K07486 K07486; transposase
D GYM46_03120 IS3 family transposase K07497 K07497; putative transposase
D GYM46_15980 DDE-type integrase/transposase/recombinase K07497 K07497; putative transposase
D GYM46_15985 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D GYM46_06255 PspA/IM30 family protein K03969 pspA; phage shock protein A
D GYM46_10275 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D GYM46_14460 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D GYM46_15035 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D GYM46_10450 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D GYM46_01960 sodium/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D GYM46_11805 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D GYM46_10060 intracellular septation protein A K06190 ispZ; intracellular septation protein
D GYM46_14415 iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D GYM46_09925 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D GYM46_13935 TfoX/Sxy family protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D GYM46_11675 carbon starvation protein A K06200 cstA; carbon starvation protein
D GYM46_07955 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D GYM46_05435 transcriptional regulator K07167 chrR; putative transcriptional regulator
D GYM46_07550 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D GYM46_11990 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D GYM46_05685 capsular biosynthesis protein K07265 kpsS; capsular polysaccharide export protein
D GYM46_12450 capsular polysaccharide biosynthesis protein K07266 kpsC; capsular polysaccharide export protein
D GYM46_12630 outer membrane beta-barrel protein K07275 ompW; outer membrane protein
D GYM46_05770 AsmA family protein K07290 yhjG; AsmA family protein
D GYM46_15375 NfeD family protein K07340 ybbJ; inner membrane protein
D GYM46_00430 HlyD family efflux transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D GYM46_07505 AI-2E family transporter K11744 tqsA; AI-2 transport protein TqsA
D GYM46_01280 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D GYM46_11545 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D GYM46_04595 ccmE; cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D GYM46_04585 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D GYM46_04600 ccmI; c-type cytochrome biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D GYM46_06395 helix-turn-helix domain-containing protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D GYM46_01630 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D GYM46_13335 ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D GYM46_06290 apaG; Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein
D GYM46_02105 copper resistance protein B K07233 pcoB; copper resistance protein B
D GYM46_09030 autotransporter domain-containing protein K07233 pcoB; copper resistance protein B
D GYM46_14170 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO
D GYM46_14405 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO
D GYM46_02090 periplasmic heavy metal sensor K24078 cnrR; nickel and cobalt resistance protein CnrR
D GYM46_09005 periplasmic heavy metal sensor K24078 cnrR; nickel and cobalt resistance protein CnrR
D GYM46_12685 hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D GYM46_00265 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D GYM46_11935 tRNA-binding protein K06878 K06878; tRNA-binding protein
D GYM46_01745 group III truncated hemoglobin K06886 glbN; hemoglobin
D GYM46_13995 cyclic nucleotide-binding domain-containing protein K07001 K07001; NTE family protein
D GYM46_15290 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D GYM46_08630 pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily
D GYM46_09025 HAD-IA family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D GYM46_11655 HAD hydrolase-like protein K07025 K07025; putative hydrolase of the HAD superfamily
D GYM46_12710 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D GYM46_13890 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D GYM46_13915 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D GYM46_05535 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D GYM46_16480 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D GYM46_04270 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D GYM46_15570 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
D GYM46_02250 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D GYM46_04840 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D GYM46_08795 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D GYM46_09260 arsH; arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D GYM46_00380 cytochrome c oxidase assembly protein K02351 K02351; putative membrane protein
D GYM46_15810 LemA family protein K03744 lemA; LemA protein
D GYM46_00365 phage holin family protein K08972 K08972; putative membrane protein
D GYM46_15800 TPM domain-containing protein K08988 K08988; putative membrane protein
D GYM46_08755 DUF350 domain-containing protein K08989 K08989; putative membrane protein
D GYM46_00960 DUF350 domain-containing protein K08989 K08989; putative membrane protein
D GYM46_14775 DUF4142 domain-containing protein K08995 K08995; putative membrane protein
D GYM46_16280 hypothetical protein K09914 K09914; putative lipoprotein
D GYM46_10030 alkylphosphonate utilization protein K06193 phnA; protein PhnA
C 99997 Function unknown
D GYM46_15805 methanol dehydrogenase K06872 K06872; uncharacterized protein
D GYM46_14520 general stress protein K06884 K06884; uncharacterized protein
D GYM46_01330 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein
D GYM46_12680 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein
D GYM46_14005 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein
D GYM46_08710 Bax inhibitor-1/YccA family protein K06890 K06890; uncharacterized protein
D GYM46_03745 DUF1289 domain-containing protein K06938 K06938; uncharacterized protein
D GYM46_09110 DUF1289 domain-containing protein K06938 K06938; uncharacterized protein
D GYM46_06030 pdeM; ligase-associated DNA damage response endonuclease PdeM K06953 K06953; uncharacterized protein
D GYM46_05445 FAD-dependent oxidoreductase K06954 K06954; uncharacterized protein
D GYM46_03960 N-acetyltransferase K06975 K06975; uncharacterized protein
D GYM46_12185 N-acetyltransferase K06975 K06975; uncharacterized protein
D GYM46_13215 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D GYM46_13355 VOC family protein K06996 K06996; uncharacterized protein
D GYM46_13875 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D GYM46_04970 lactoylglutathione lyase K07032 K07032; uncharacterized protein
D GYM46_11085 flagellar biosynthesis protein FlgM K07054 K07054; uncharacterized protein
D GYM46_05265 VapC toxin family PIN domain ribonuclease K07064 K07064; uncharacterized protein
D GYM46_05865 type II toxin-antitoxin system VapC family toxin K07064 K07064; uncharacterized protein
D GYM46_02305 HEPN domain-containing protein K07076 K07076; uncharacterized protein
D GYM46_12565 FAD-binding dehydrogenase K07077 K07077; uncharacterized protein
D GYM46_02015 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM46_04785 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM46_05335 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM46_06120 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM46_06415 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM46_15495 DUF839 domain-containing protein K07093 K07093; uncharacterized protein
D GYM46_00100 NAD(P)-dependent oxidoreductase K07118 K07118; uncharacterized protein
D GYM46_07180 SDR family oxidoreductase K07124 K07124; uncharacterized protein
D GYM46_12055 sel1 repeat family protein K07126 K07126; uncharacterized protein
D GYM46_01080 sel1 repeat family protein K07126 K07126; uncharacterized protein
D GYM46_12925 glutathione S-transferase K07136 K07136; uncharacterized protein
D GYM46_16505 NAD(P)/FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein
D GYM46_08195 DUF418 domain-containing protein K07148 K07148; uncharacterized protein
D GYM46_08365 peptidase S16 K07157 K07157; uncharacterized protein
D GYM46_08650 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D GYM46_15550 DUF192 domain-containing protein K09005 K09005; uncharacterized protein
D GYM46_06960 DUF167 domain-containing protein K09131 K09131; uncharacterized protein
D GYM46_08865 DUF190 domain-containing protein K09137 K09137; uncharacterized protein
D GYM46_04090 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein
D GYM46_05450 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein
D GYM46_06910 YaiI/YqxD family protein K09768 K09768; uncharacterized protein
D GYM46_12635 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D GYM46_08360 Trm112 family protein K09791 K09791; uncharacterized protein
D GYM46_02385 DUF459 domain-containing protein K09795 K09795; uncharacterized protein
D GYM46_16290 SIMPL domain-containing protein K09797 K09797; uncharacterized protein
D GYM46_09735 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein
D GYM46_02935 BrnT family toxin K09803 K09803; uncharacterized protein
D GYM46_06860 BrnT family toxin K09803 K09803; uncharacterized protein
D GYM46_12095 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D GYM46_15300 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D GYM46_00750 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D GYM46_01470 N-acetyltransferase K09919 K09919; uncharacterized protein
D GYM46_08270 DUF484 family protein K09921 K09921; uncharacterized protein
D GYM46_05200 DMT family protein K09922 K09922; uncharacterized protein
D GYM46_00085 DUF2059 domain-containing protein K09924 K09924; uncharacterized protein
D GYM46_11790 DUF692 domain-containing protein K09930 K09930; uncharacterized protein
D GYM46_05065 hypothetical protein K09939 K09939; uncharacterized protein
D GYM46_09955 YegP family protein K09946 K09946; uncharacterized protein
D GYM46_05180 nucleotidyltransferase family protein K09962 K09962; uncharacterized protein
D GYM46_05910 DUF2239 family protein K09965 K09965; uncharacterized protein
D GYM46_10315 TraB/GumN family protein K09973 K09973; uncharacterized protein
D GYM46_06515 DUF1318 domain-containing protein K09978 K09978; uncharacterized protein
D GYM46_00970 YjfI family protein K09980 K09980; uncharacterized protein
D GYM46_07820 hypothetical protein K09981 K09981; uncharacterized protein
D GYM46_06865 DUF1993 domain-containing protein K09983 K09983; uncharacterized protein
D GYM46_16240 stringent starvation protein B K09985 K09985; uncharacterized protein
D GYM46_02855 DUF1285 domain-containing protein K09986 K09986; uncharacterized protein
D GYM46_13250 DUF1013 domain-containing protein K09987 K09987; uncharacterized protein
D GYM46_11910 VWA domain-containing protein K09989 K09989; uncharacterized protein
D GYM46_15610 DUF2497 domain-containing protein K09991 K09991; uncharacterized protein
D GYM46_09100 metal-sensing transcriptional repressor K07807 K07807; uncharacterized protein
D GYM46_16000 metal-sensing transcriptional repressor K07807 K07807; uncharacterized protein
D GYM46_11590 nucleoside-diphosphate sugar epimerase K07276 K07276; uncharacterized protein
D GYM46_06840 RNA-binding protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 21, 2024