+C Peptidases and inhibitors KO
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Peptidases and Inhibitors - Bacillus methanolicus
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AAspartic peptidases
B Family A1: pepsin family
B Family A2: retropepsin family
B Family A5: thermopsin family
B Family A8: signal peptidase II family
C BMMGA3_05770 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
B Family A22: presenilin family
B Family A24: type IV prepilin peptidase family
B Family A25: gpr protease family
C BMMGA3_12065 gpr; Germination protease K06012 gpr; spore protease [EC:3.4.24.78]
B Family A26: omptin family
B Family A28
B Family A31: HybD endopeptidase family
B Family A36
C BMMGA3_05710 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
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ACysteine peptidases
B Family C1: papain family
B Family C2: calpain family
B Family C3: picornain family
B Family C4: NIa protease family
B Family C5
B Family C9
B Family C10: streptopain family
B Family C11: clostripain family
B Family C12: ubiquitin C-terminal hydrolase family
B Family C13: legumain family
B Family C14: caspase family
B Family C15: pyroglutamyl peptidase I family
B Family C16
B Family C19: ubiquitin-specific protease family
B Family C25: gingipain family
B Family C26: gamma-glutamyl hydrolase family
C BMMGA3_01595 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
B Family C27
B Family C30
B Family C37
B Family C39
B Family C40
C BMMGA3_06950 lytF; Peptidoglycan endopeptidase LytF K19224 lytE; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]
C BMMGA3_09105 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
C BMMGA3_08805 ykfC; Gamma-D-glutamyl-L-lysine endopeptidase K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]
B Family C44
C BMMGA3_01670 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C BMMGA3_01940 gltA; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
C BMMGA3_03480 gltA2; glutamate synthase, NADPH, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
C BMMGA3_01020 glmS; Glutamine-fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
C BMMGA3_04335 asnO; Asparagine synthetase [glutamine-hydrolyzing] 3 K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
C BMMGA3_13560 asnB; Asparagine synthetase [glutamine-hydrolyzing] 1 K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
B Family C45
B Family C46: hedgehog family
B Family C47: staphopain family
B Family C48: Ulp1 endopeptidase family
B Family C50: separase family
B Family C54: Aut2 peptidase family
B Family C55: YopJ protease family
B Family C56: PfpI endopeptidase family
C BMMGA3_04810 PfpI family intracellular protease K05520 yhbO; deglycase [EC:3.5.1.124]
C BMMGA3_08050 PfpI family intracellular protease K05520 yhbO; deglycase [EC:3.5.1.124]
B Family C57: vaccinia virus I7 peptidase family
B Family C58
B Family C59
B Family C60
C BMMGA3_01965 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
C BMMGA3_14500 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
B Family C63
B Family C64
B Family C65
B Family C67
B Family C69
B Family C70
B Family C75
B Family C76
B Family C78
B Family C79
B Family C82
B Family C83
B Family C85
B Family C86
B Family C88
B Family C89
B Family C97
B Family C98
B Family C110
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AGlutamic peptidases
B Family G1
B Family G4
B Family G5: prenyl protease 2 family
C BMMGA3_01475 ydiL; Putative membrane peptidase YdiL K07052 K07052; CAAX protease family protein
C BMMGA3_05125 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
C BMMGA3_09115 putative membrane protein K07052 K07052; CAAX protease family protein
C BMMGA3_10920 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
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AMetallo peptidases
B Family M1
B Family M2
B Family M3
C BMMGA3_04565 yjbG; Oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
B Family M4: thermolysin family
B Family M5: mycolysin family
B Family M6: immune inhibitor A family
B Family M7: snapalysin family
B Family M8: leishmanolysin family
B Family M9
B Family M10
B Family M12: astacin/adamalysin family
B Family M13: neprilysin family
B Family M14: carboxypeptidase A family
C BMMGA3_11660 Gamma-D-glutamyl-L-diamino acid endopeptidase 1 K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]
B Family M15: zinc D-Ala-D-Ala carboxypeptidase family
C BMMGA3_10075 yodJ; Putative carboxypeptidase YodJ K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
B Family M16: pitrilysin family
B Family M17: leucyl aminopeptidase family
C BMMGA3_14130 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
B Family M18
B Family M19: membrane dipeptidase family
C BMMGA3_08905 dipeptidase Bdp K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
B Family M20
C BMMGA3_13435 ytjP; Putative dipeptidase YtjP K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
C BMMGA3_11260 yqjE; putative protein YqjE K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
C BMMGA3_16400 pepT; Peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
C BMMGA3_04110 yhaA; Putative amidohydrolase YhaA K01436 yhaA; amidohydrolase [EC:3.5.1.-]
C BMMGA3_08990 amhX; Amidohydrolase AmhX K14665 amhX; amidohydrolase [EC:3.5.1.-]
C BMMGA3_05255 dapL; N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
B Family M23
C BMMGA3_14280 lytH; L-Ala-D-Glu endopeptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
B Family M24
C BMMGA3_00805 map1; Methionine aminopeptidase 1 K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
C BMMGA3_01870 map2; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
C BMMGA3_03255 map; Methionine aminopeptidase 1 K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
C BMMGA3_11485 yqhT; putative peptidase YqhT K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
B Family M26
B Family M27
B Family M28: aminopeptidase Y family
B Family M29: aminopeptidase T family
C BMMGA3_03110 ampS; Aminopeptidase AmpS K19689 ampS; aminopeptidase [EC:3.4.11.-]
B Family M32: carboxypeptidase Taq family
C BMMGA3_10470 ypwA; Putative metalloprotease YpwA K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
B Family M34: anthrax lethal factor family
C BMMGA3_10250 hypothetical protein K20109 zmp1; Pro-Pro endopeptidase [EC:3.4.24.89]
C BMMGA3_15165 hypothetical protein K20109 zmp1; Pro-Pro endopeptidase [EC:3.4.24.89]
B Family M35: deuterolysin family
B Family M36: fungalysin family
B Family M38: beta-aspartyl dipeptidase family
C BMMGA3_03930 iadA; Isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
B Family M41: FtsH endopeptidase family
C BMMGA3_00390 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
C BMMGA3_08620 cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
B Family M42: glutamyl aminopeptidase family
B Family M43: cytophagalysin family
B Family M44
B Family M48: Ste24 endopeptidase family
B Family M49: dipeptidyl-peptidase III family
B Family M50: S2P protease family
C BMMGA3_12515 spoIVFB; Stage IV sporulation protein FB K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
C BMMGA3_06290 rasP; Zinc metalloprotease RasP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
B Family M54
B Family M55: DppA aminopeptidase family
C BMMGA3_08840 dppA; D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
B Family M56
B Family M67
B Family M72
B Family M73
C BMMGA3_08515 camelysin K06336 tasA; spore coat-associated protein N
B Family M74
B Family M80
B Family M82
C BMMGA3_10880 prsW; Protease PrsW K24131 prsW; protease PrsW [EC:3.4.-.-]
B Family M85
B Family M88
B Family M90
B Family M98
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AAsparagine peptide lyases
B Family N1
B Family N8
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AMixed peptidases
B Family P1: DmpA aminopeptidase family
B Family P2
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ASerine peptidases
B Family S1: chymotrypsin family
C BMMGA3_03860 serine protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
B Family S3: togavirin family
B Family S6
B Family S7: flavivirin family
B Family S8: subtilisin family
C BMMGA3_15195 peptidase S8 and S53 subtilisin kexin sedolisin K13274 wprA; cell wall-associated protease [EC:3.4.21.-]
C BMMGA3_01825 isp; Intracellular serine protease K13275 isp; major intracellular serine protease [EC:3.4.21.-]
C BMMGA3_16025 minor extracellular serine protease K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]
B Family S9: prolyl oligopeptidase family
B Family S10
B Family S11: D-Ala-D-Ala carboxypeptidase A family
C BMMGA3_00075 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C BMMGA3_11010 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C BMMGA3_11085 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
B Family S12: D-Ala-D-Ala carboxypeptidase B family
B Family S13: D-Ala-D-Ala peptidase C family
B Family S14: ClpP endopeptidase family
C BMMGA3_14685 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
B Family S15
B Family S16: lon protease family
C BMMGA3_12710 lon1; Lon protease 1 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
C BMMGA3_12715 lon2; Lon protease 2 K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
C BMMGA3_05560 ylbL; putative protein YlbL K07177 K07177; Lon-like protease
B Family S21: assemblin family
B Family S24: LexA family
C BMMGA3_06700 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
B Family S26: signal peptidase I family
C BMMGA3_04245 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C BMMGA3_06030 signal peptidase I S K03100 lepB; signal peptidase I [EC:3.4.21.89]
C BMMGA3_08520 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
B Family S28
B Family S31
B Family S32
B Family S33
B Family S41: C-terminal processing peptidase family
C BMMGA3_10070 ctpA; Carboxy-terminal processing protease CtpA K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
C BMMGA3_14880 ctpB; Carboxy-terminal processing protease CtpB K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
C BMMGA3_15750 carboxyl-terminal processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
B Family S45
B Family S49: protease IV family
C BMMGA3_13220 sppA; Putative signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
B Family S50
B Family S51
C BMMGA3_04925 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
B Family S53
B Family S54: Rhomboid family
C BMMGA3_11685 serine protease of Rhomboid family K19225 gluP; rhomboid protease GluP [EC:3.4.21.105]
C BMMGA3_01275 ydcA; Putative rhomboid protease YdcA K28166 ydcA; rhomboid protease YdcA [EC:3.4.21.-]
B Family S55: SpoIVB peptidase family
C BMMGA3_11370 spoIVB; SpoIVB peptidase K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
B Family S62
B Family S66
C BMMGA3_08815 ykfA; putative murein peptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
B Family S77: phage prohead processing peptidase family
B Family S78
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AThreonine peptidases
B Family T1: proteasome family
C BMMGA3_06085 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
B Family T2
B Family T3: gamma-glutamyltransferase family
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APeptidases of unknown catalytic type
B Family U32
C BMMGA3_12215 yrrO; putative protease YrrO K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C BMMGA3_12220 yrrN; putative protease YrrN K08303 prtC; U32 family peptidase [EC:3.4.-.-]
B Family U62
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APeptidase inhibitors
B Family I1: Kazal family
B Family I2: Kunitz - BPTI family
B Family I4: serpin family
B Family I11: ecotin family
B Family I17: WAP-type family
B Family I25: cystatin family
B Family I27: calpastatin family
B Family I32: IAP family
B Family I34: IA3 family
B Family I35: timp family
B Family I39: alpha2M family
B Family I47: latexin family
B Family I49: proSAAS family
B Family I51: IC family
B Family I57: staphostatin B family
B Family I63
B Family I80
C BMMGA3_14200 YoeB K23598 iseA; iseA protein
B Family I87
C BMMGA3_13030 membrane protease subunit, stomatin/prohibitin K04087 hflC; modulator of FtsH protease HflC
C BMMGA3_13035 membrane protease subunit, stomatin/prohibitin K04088 hflK; modulator of FtsH protease HflK
B Family I93
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 20, 2025
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Classification taken and modified from MEROPS