+E Transcription factors KO
#
Transcription Factors - Bacillus methanolicus
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D BMMGA3_07880 ydeE; putative HTH-type transcriptional regulator YdeE K13653 K13653; AraC family transcriptional regulator
D BMMGA3_08540 hypothetical protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D BMMGA3_07910 hypothetical protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D BMMGA3_01935 gltC; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BMMGA3_07380 cysL; HTH-type transcriptional regulator CysL K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D BMMGA3_09685 fruR; putative HTH-type transcriptional regulator FruR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D BMMGA3_15865 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D BMMGA3_11915 ccpN; Transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D BMMGA3_13325 ccpA; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D BMMGA3_06420 ymfC; putative HTH-type transcriptional regulator YmfC K03710 K03710; GntR family transcriptional regulator
D BMMGA3_13100 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BMMGA3_02100 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BMMGA3_08670 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D BMMGA3_16510 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D BMMGA3_12875 fadR; Fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D BMMGA3_16160 transcriptional regulator, TetR family protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
C LuxR family
D BMMGA3_12820 hypothetical protein K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D BMMGA3_04055 hpr; HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D BMMGA3_05090 transcriptional regulator, MarR family protein K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BMMGA3_08095 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BMMGA3_12810 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BMMGA3_09665 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BMMGA3_06580 glnR; transcriptional repressor of the glutamine synthetase K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D BMMGA3_03885 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D BMMGA3_02915 tnrA; transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D BMMGA3_07925 HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BMMGA3_11115 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BMMGA3_11825 zur; Zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D BMMGA3_03515 perR; Peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D BMMGA3_11150 nitric oxide sensitive transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BMMGA3_12290 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D BMMGA3_07825 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BMMGA3_14515 cadmium efflux system accessory protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D BMMGA3_08505 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D BMMGA3_04200 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D BMMGA3_10325 mntR; Transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BMMGA3_10625 birA; Bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BMMGA3_00275 purR; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D BMMGA3_02515 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BMMGA3_10135 rocR; transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D BMMGA3_01465 rex; Redox-sensing transcriptional repressor rex K01926 rex; redox-sensing transcriptional repressor
D BMMGA3_06095 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D BMMGA3_09925 hypothetical protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BMMGA3_01295 putative transcriptional regulator, CopG family protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D BMMGA3_01605 glcT; PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
D BMMGA3_01065 mtlR; Transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator
C Others
D BMMGA3_09240 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BMMGA3_09420 hypothetical protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BMMGA3_00225 abrB; transcriptional regulator, AbrB family protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BMMGA3_00320 spoVT; Stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D BMMGA3_16715 spo0J; Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BMMGA3_16725 noc; Nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BMMGA3_11380 ahrC; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BMMGA3_12040 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BMMGA3_07350 Transcriptional activator tenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BMMGA3_01095 transcriptional regulator TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D BMMGA3_00535 ctsR; Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D BMMGA3_14665 cggR; Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D BMMGA3_04480 med; Transcriptional activator protein med K05519 med; transcriptional activator of comK gene
D BMMGA3_10775 hypothetical protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D BMMGA3_05780 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BMMGA3_16255 transcription factor, RsfA family protein K06314 rsfA; prespore-specific regulator
D BMMGA3_05585 putative spore coat protein regulator protein YlbO K06314 rsfA; prespore-specific regulator
D BMMGA3_12995 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D BMMGA3_15250 competence transcription factor K02250 comK; competence protein ComK
D BMMGA3_04225 comK; competence transcription factor K02250 comK; competence protein ComK
D BMMGA3_05620 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
#
Classification taken and modified from TRANSFAC 7.0