+F Repair protein KO #

  DNA Repair and Recombination Proteins - Brucella abortus 2308

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BAB1_0185 Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BAB1_0518 HhH-GPD:Iron-sulfur cluster loop:Endonuclease III, FCL:A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BAB1_0165 Helix-hairpin-helix motif:HhH-GPD:Helix-hairpin-helix DNA-binding, class 1:Endonuclease III, HhH:Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BAB1_1940 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BAB1_1687 dut; DeoxyUTP pyrophosphatase:DeoxyUTP pyrophosphatase, subfamily 1:DeoxyUTP pyrophosphatase, subfamily 2 K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BAB1_0185 Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BAB2_0347 Helix-turn-helix, AraC type:Methylated-DNA-[protein]-cysteine S-methyltransferase:Metal binding domain of Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BAB1_0398 Helix-turn-helix, AraC type:Methylated-DNA-[protein]-cysteine S-methyltransferase:Metal binding domain of Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BAB2_0704 alkB; 2OG-Fe(II) oxygenase superfamily K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E BAB1_0668 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BAB1_0644 ATP/GTP-binding site motif A (P-loop):Uracil-DNA glycosylase superfamily:Phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BAB1_1661 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BAB1_0518 HhH-GPD:Iron-sulfur cluster loop:Endonuclease III, FCL:A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BAB2_0179 tag; Methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BAB1_2184 Formamidopyrimidine-DNA glycolase:Formamidopyrimidine-DNA glycolase, zinc binding domain:Sugar transporter superfamily K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BAB1_0165 Helix-hairpin-helix motif:HhH-GPD:Helix-hairpin-helix DNA-binding, class 1:Endonuclease III, HhH:Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BAB1_2004 AP endonuclease, family 1:Exodeoxyribonuclease III xth:Endonuclease/exonuclease/phosphatase family K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BAB1_0892 xth-1; AP endonuclease, family 1:Exodeoxyribonuclease III xth:Endonuclease/exonuclease/phosphatase family K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BAB1_1290 recJ; Phosphoesterase, RecJ-like:Phosphoesterase, DHHA1:Bacterial RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BAB1_1439 ligA; BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD... K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BAB1_0120 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel... K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BAB1_1128 Cytochrome c heme-binding site:ATP/GTP-binding site motif A (P-loop):ABC transporter:Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BAB1_1530 uvrB; DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E BAB1_0720 Excinuclease ABC, C subunit, N-terminal:Helix-hairpin-helix motif:Excinuclease ABC, C subunit, C-terminal:UvrB/UvrC protein:H... K03703 uvrC; excinuclease ABC subunit C E BAB1_1432 UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BAB1_0120 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel... K02335 polA; DNA polymerase I [EC:2.7.7.7] E BAB1_1439 ligA; BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD... K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BAB1_1264 RNA polymerase Rpb2, domain 6:RNA polymerase, beta subunit:RNA polymerase Rpb2, domain 7:RNA polymerase Rpb2, domain 2:RNA po... K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BAB1_1263 rpoC; RNA polymerase, alpha subunit:RNA polymerase I subunit A, N-terminal:RNA polymerase Rpb1, domain 1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BAB1_1231 rpoA; RNA polymerase, alpha chain, bacterial and organelle K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BAB1_0671 RNA polymerase, omega subunit:RNA polymerase Rpb6 K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BAB2_0661 mfd; DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):Haem peroxidase:Transcription-repair coupli... K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BAB1_0146 DNA mismatch repair protein MutS, C-terminal:Aldo/keto reductase:ATP/GTP-binding site motif A (P-loop):MutS 1 protein:DNA mis... K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BAB2_0212 mutL; DNA mismatch repair protein:ATP-binding region, ATPase-like K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BAB2_0475 Exonuclease VII, large subunit:OB-fold nucleic acid binding domain K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BAB1_0457 xseB; Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BAB1_0845 Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold nucleic acid binding domain:DNA polymerase III alpha sub... K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BAB1_0002 dnaN; DNA polymerase III, beta chain:Inorganic pyrophosphatase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BAB1_0711 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BAB1_2058 putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BAB1_1012 Replication factor C conserved domain K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BAB1_2072 dnaQ; Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA polymerase 3, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BAB2_0617 DNA polymerase III, epsilon subunit:Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BAB2_0967 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BAB1_0031 Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BAB1_1439 ligA; BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD... K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BAB1_1432 UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BAB1_1126 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BAB1_1224 recA; RecA bacterial DNA recombination protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase K03553 recA; recombination protein RecA E BAB1_1715 ruvA; Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix DNA-binding, class 1 K03550 ruvA; holliday junction DNA helicase RuvA E BAB1_1714 ruvB; CbxX/CfqX superfamily:Disease resistance protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region:... K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BAB1_1716 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BAB1_1812 priA; DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):Primosomal protein n K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E BAB1_1224 recA; RecA bacterial DNA recombination protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase K03553 recA; recombination protein RecA E BAB1_0474 radA; RecA bacterial DNA recombination protein:ATP/GTP-binding site motif A (P-loop):Peptidase family S16:AAA ATPase:DNA repair pro... K04485 radA; DNA repair protein RadA/Sms E BAB1_0003 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase K03629 recF; DNA replication and repair protein RecF E BAB2_0659 recG; DEAD/DEAH box helicase:RecA bacterial DNA recombination protein:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):Ha... K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BAB1_1290 recJ; Phosphoesterase, RecJ-like:Phosphoesterase, DHHA1:Bacterial RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BAB1_0684 Cytochrome P450:Recombination protein O, RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BAB1_0029 recR; RecR protein:Toprim sub-domain:TOPRIM K06187 recR; recombination protein RecR E BAB1_1440 recN; ATP/GTP-binding site motif A (P-loop):ABC transporter:DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BAB1_1715 ruvA; Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix DNA-binding, class 1 K03550 ruvA; holliday junction DNA helicase RuvA E BAB1_1714 ruvB; CbxX/CfqX superfamily:Disease resistance protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region:... K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BAB1_1716 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BAB1_2105 UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BAB1_2104 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BAB1_0588 ATP/GTP-binding site motif A (P-loop) K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BAB1_1121 gyrA; DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA gyrase C-terminal repeat, beta-propeller K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BAB1_0122 Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region. K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BAB2_0636 DNA topoisomerase I:DNA topoisomerase I, ATP-binding:DNA topoisomerase I, DNA-binding:Bacterial DNA topoisomerase I:Toprim su... K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BAB1_1129 Histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BAB1_1290 recJ; Phosphoesterase, RecJ-like:Phosphoesterase, DHHA1:Bacterial RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BAB1_0684 Cytochrome P450:Recombination protein O, RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BAB1_0029 recR; RecR protein:Toprim sub-domain:TOPRIM K06187 recR; recombination protein RecR F BAB1_1439 ligA; BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD... K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BAB1_0799 himA; Histone-like bacterial DNA-binding protein:Integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F BAB1_0152 ihfB; Histone-like bacterial DNA-binding protein:Integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F BAB1_1128 Cytochrome c heme-binding site:ATP/GTP-binding site motif A (P-loop):ABC transporter:Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BAB1_1530 uvrB; DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BAB2_0625 UMUC-like DNA-repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BAB1_1224 recA; RecA bacterial DNA recombination protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase K03553 recA; recombination protein RecA D BAB1_1167 lexA; Peptidase family S24:Peptidase S24, C-terminal:LexA DNA-binding region K01356 lexA; repressor LexA [EC:3.4.21.88] D BAB1_1440 recN; ATP/GTP-binding site motif A (P-loop):ABC transporter:DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BAB1_0068 conserved hypothetical protein K14160 imuA; protein ImuA D BAB1_0067 conserved hypothetical protein K14161 imuB; protein ImuB D BAB1_0066 Immunoglobulin/major histocompatibility complex:Phosphoesterase PHP, N-terminal:DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BAB1_1126 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BAB2_0409 Ribosomal protein S16:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BAB1_1940 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BAB1_1687 dut; DeoxyUTP pyrophosphatase:DeoxyUTP pyrophosphatase, subfamily 1:DeoxyUTP pyrophosphatase, subfamily 2 K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BAB1_1063 Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BAB2_0889 nrdE; Ribonucleotide reductase large subunit:Prenyl group binding site (CAAX box) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BAB2_0888 nrdF; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024