+F Repair protein KO
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DNA Repair and Recombination Proteins - Burkholderia mallei SAVP1
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BMASAVP1_A0668 ogt; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BMASAVP1_A2376 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BMASAVP1_0649 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BMASAVP1_A0082 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BMASAVP1_A1022 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BMASAVP1_A0459 putative mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMASAVP1_A2661 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BMASAVP1_A0668 ogt; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BMASAVP1_A2836 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BMASAVP1_A2376 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BMASAVP1_0649 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BMASAVP1_A2082 phage SPO1 DNA polymerase domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BMASAVP1_A2835 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BMASAVP1_A2158 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BMASAVP1_A0082 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BMASAVP1_A3446 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BMASAVP1_A0083 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BMASAVP1_A1022 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BMASAVP1_A2247 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BMASAVP1_A2780 xth-1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BMASAVP1_A2205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BMASAVP1_A2062 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BMASAVP1_1500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BMASAVP1_1218 uvrA2; excinuclease ABC, subunit A, form 2 K03701 uvrA; excinuclease ABC subunit A
E BMASAVP1_A0063 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E BMASAVP1_1739 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E BMASAVP1_A2456 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E BMASAVP1_A1461 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BMASAVP1_1500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BMASAVP1_A2062 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BMASAVP1_A3178 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BMASAVP1_A3177 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BMASAVP1_A3143 rpoA; DNA-directed rna polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BMASAVP1_A0816 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BMASAVP1_A1988 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BMASAVP1_A2173 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BMASAVP1_A0514 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BMASAVP1_A0567 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BMASAVP1_1510 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BMASAVP1_A1044 dnaE1; DNA polymerase III, alpha subunit, form 1 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BMASAVP1_A2849 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BMASAVP1_A2338 putative DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BMASAVP1_A0368 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BMASAVP1_A1915 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BMASAVP1_A1272 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BMASAVP1_A1851 putative DNA polymerase III, subunit gamma K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BMASAVP1_A2062 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BMASAVP1_A1461 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BMASAVP1_A0061 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BMASAVP1_A1973 gp27 K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BMASAVP1_A1189 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E BMASAVP1_A1188 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E BMASAVP1_A1190 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BMASAVP1_A2672 recA; recA protein K03553 recA; recombination protein RecA
E BMASAVP1_A0267 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BMASAVP1_A0266 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BMASAVP1_A0268 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BMASAVP1_A3348 priA; primosomal protein n` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BMASAVP1_A1894 priB; primosomal replication protein n K02686 priB; primosomal replication protein N
D RecFOR pathway proteins
E BMASAVP1_A2672 recA; recA protein K03553 recA; recombination protein RecA
E BMASAVP1_A2077 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BMASAVP1_A0306 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BMASAVP1_A2205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BMASAVP1_A2464 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BMASAVP1_A1849 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BMASAVP1_A0492 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BMASAVP1_A0267 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BMASAVP1_A0266 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BMASAVP1_A0268 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BMASAVP1_A2578 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BMASAVP1_A2850 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
F BMASAVP1_A3397 hupB; DNA-binding protein HU, form B K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BMASAVP1_A2205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BMASAVP1_A2464 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BMASAVP1_A1849 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BMASAVP1_A2062 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BMASAVP1_A0271 fis; factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F BMASAVP1_A1533 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F BMASAVP1_A2571 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F BMASAVP1_A3175 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BMASAVP1_1218 uvrA2; excinuclease ABC, subunit A, form 2 K03701 uvrA; excinuclease ABC subunit A
F BMASAVP1_A0063 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F BMASAVP1_1739 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
F BMASAVP1_A1364 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BMASAVP1_A1386 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BMASAVP1_1551 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BMASAVP1_A3404 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BMASAVP1_A3442 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F BMASAVP1_1225 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BMASAVP1_A2236 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BMASAVP1_A2672 recA; recA protein K03553 recA; recombination protein RecA
D BMASAVP1_A1699 lexA; lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BMASAVP1_A0492 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BMASAVP1_A0112 conserved hypothetical protein K14160 imuA; protein ImuA
D BMASAVP1_A0113 conserved hypothetical protein K14161 imuB; protein ImuB
D BMASAVP1_A0114 dnaE2; DNA polymerase III, alpha subunit, form 2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BMASAVP1_A0061 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BMASAVP1_A2673 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BMASAVP1_A3303 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D BMASAVP1_A1815 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BMASAVP1_0375 ATP-dependent helicase, DEAD/DEAH family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BMASAVP1_A0459 putative mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMASAVP1_A2661 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BMASAVP1_1051 conserved hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BMASAVP1_A0431 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BMASAVP1_A0430 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024