+F Repair protein KO
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DNA Repair and Recombination Proteins - Bifidobacterium animalis subsp. lactis CNCM I-2494
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BALAC2494_01011 Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BALAC2494_00477 Glycosylase hydrolyzing N-glycosyl compounds K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BALAC2494_01385 Glycosylase hydrolyzing N-glycosyl compounds K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BALAC2494_01279 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BALAC2494_00555 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BALAC2494_01926 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BALAC2494_00153 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BALAC2494_01011 Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BALAC2494_00477 Glycosylase hydrolyzing N-glycosyl compounds K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BALAC2494_01385 Glycosylase hydrolyzing N-glycosyl compounds K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BALAC2494_01279 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BALAC2494_00102 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
E BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BALAC2494_00274 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BALAC2494_01089 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BALAC2494_00315 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BALAC2494_00275 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BALAC2494_01395 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BALAC2494_02056 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BALAC2494_00965 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BALAC2494_01387 DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BALAC2494_01388 DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BALAC2494_00724 DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BALAC2494_00499 DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BALAC2494_00229 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E BALAC2494_01411 Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BALAC2494_01410 Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BALAC2494_01487 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BALAC2494_01106 DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BALAC2494_00371 DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BALAC2494_00899 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BALAC2494_01439 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BALAC2494_00911 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BALAC2494_01395 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BALAC2494_02056 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BALAC2494_00965 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BALAC2494_00591 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E BALAC2494_01249 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E BALAC2494_01406 Hydrolase acting on ester bonds K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
E BALAC2494_01420 Hydrolase acting on ester bonds K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BALAC2494_00133 RecA K03553 recA; recombination protein RecA
E BALAC2494_00301 RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BALAC2494_00302 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BALAC2494_00300 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BALAC2494_00496 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E BALAC2494_00133 RecA K03553 recA; recombination protein RecA
E BALAC2494_00715 RadA K04485 radA; DNA repair protein RadA/Sms
E BALAC2494_01105 RecF K03629 recF; DNA replication and repair protein RecF
E BALAC2494_01090 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BALAC2494_00864 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BALAC2494_01466 RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BALAC2494_00910 RecR K06187 recR; recombination protein RecR
E BALAC2494_00390 RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BALAC2494_00301 RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BALAC2494_00302 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BALAC2494_00300 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E BALAC2494_01821 Hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BALAC2494_01102 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BALAC2494_00149 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BALAC2494_01103 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BALAC2494_00143 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BALAC2494_00901 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BALAC2494_00488 DNA-binding protein HB1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BALAC2494_01466 RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BALAC2494_00910 RecR K06187 recR; recombination protein RecR
F BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F BALAC2494_00562 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BALAC2494_00274 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BALAC2494_01089 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BALAC2494_00315 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BALAC2494_00763 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BALAC2494_00534 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V
C Other SOS response factors
D BALAC2494_00133 RecA K03553 recA; recombination protein RecA
D BALAC2494_00031 Repressor lexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BALAC2494_00390 RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BALAC2494_00591 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BALAC2494_01249 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BALAC2494_00134 RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BALAC2494_00147 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BALAC2494_00555 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BALAC2494_01926 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BALAC2494_00920 Hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D BALAC2494_00432 ADP-ribose diphosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D BALAC2494_00153 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BALAC2494_00803 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BALAC2494_00804 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024