+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bifidobacterium animalis subsp. lactis CNCM I-2494

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BALAC2494_01011 Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BALAC2494_00477 Glycosylase hydrolyzing N-glycosyl compounds K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BALAC2494_01385 Glycosylase hydrolyzing N-glycosyl compounds K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BALAC2494_01279 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BALAC2494_00555 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BALAC2494_01926 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BALAC2494_00153 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BALAC2494_01011 Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BALAC2494_00477 Glycosylase hydrolyzing N-glycosyl compounds K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BALAC2494_01385 Glycosylase hydrolyzing N-glycosyl compounds K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BALAC2494_01279 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BALAC2494_00102 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E BALAC2494_00274 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BALAC2494_01089 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BALAC2494_00315 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BALAC2494_00275 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BALAC2494_01395 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALAC2494_02056 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALAC2494_00965 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BALAC2494_01387 DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BALAC2494_01388 DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BALAC2494_00724 DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BALAC2494_00499 DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BALAC2494_00229 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E BALAC2494_01411 Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BALAC2494_01410 Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BALAC2494_01487 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BALAC2494_01106 DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BALAC2494_00371 DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BALAC2494_00899 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BALAC2494_01439 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BALAC2494_00911 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BALAC2494_01395 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALAC2494_02056 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALAC2494_00965 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALAC2494_00591 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E BALAC2494_01249 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E BALAC2494_01406 Hydrolase acting on ester bonds K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] E BALAC2494_01420 Hydrolase acting on ester bonds K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BALAC2494_00133 RecA K03553 recA; recombination protein RecA E BALAC2494_00301 RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BALAC2494_00302 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BALAC2494_00300 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BALAC2494_00496 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E BALAC2494_00133 RecA K03553 recA; recombination protein RecA E BALAC2494_00715 RadA K04485 radA; DNA repair protein RadA/Sms E BALAC2494_01105 RecF K03629 recF; DNA replication and repair protein RecF E BALAC2494_01090 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BALAC2494_00864 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BALAC2494_01466 RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BALAC2494_00910 RecR K06187 recR; recombination protein RecR E BALAC2494_00390 RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BALAC2494_00301 RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BALAC2494_00302 RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BALAC2494_00300 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E BALAC2494_01821 Hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BALAC2494_01102 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BALAC2494_00149 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BALAC2494_01103 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BALAC2494_00143 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BALAC2494_00901 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BALAC2494_00488 DNA-binding protein HB1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BALAC2494_01466 RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BALAC2494_00910 RecR K06187 recR; recombination protein RecR F BALAC2494_00436 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BALAC2494_00562 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BALAC2494_00274 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BALAC2494_01089 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BALAC2494_00315 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BALAC2494_00763 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BALAC2494_00534 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V C Other SOS response factors D BALAC2494_00133 RecA K03553 recA; recombination protein RecA D BALAC2494_00031 Repressor lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BALAC2494_00390 RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BALAC2494_00591 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D BALAC2494_01249 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D BALAC2494_00134 RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BALAC2494_00147 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BALAC2494_00555 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BALAC2494_01926 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BALAC2494_00920 Hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D BALAC2494_00432 ADP-ribose diphosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D BALAC2494_00153 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BALAC2494_00803 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BALAC2494_00804 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024