+E Transcription factors KO
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Transcription Factors - Bordetella sp. H567
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D AKI39_05440 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AKI39_05495 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AKI39_19090 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AKI39_05445 cupin K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AKI39_05500 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AKI39_13580 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AKI39_15000 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
C LysR family
D AKI39_20535 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKI39_18520 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKI39_23875 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKI39_07060 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKI39_22240 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKI39_20950 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKI39_21260 hypothetical protein K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D AKI39_08880 XRE family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D AKI39_13775 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AKI39_23230 LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D AKI39_02160 hypothetical protein K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D AKI39_07820 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D AKI39_16365 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D AKI39_11420 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D AKI39_22780 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D AKI39_06390 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D AKI39_13005 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D AKI39_20115 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D AKI39_19035 hypothetical protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D AKI39_13790 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D AKI39_23285 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D AKI39_11975 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D AKI39_20820 hypothetical protein K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D AKI39_10225 hypothetical protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D AKI39_18145 hypothetical protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D AKI39_21380 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_20520 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_09810 transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_23965 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_13485 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_18015 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_16395 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_13150 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_13415 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_17695 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKI39_12930 hypothetical protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D AKI39_12730 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D AKI39_09960 DeoR faimly transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D AKI39_24595 hypothetical protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D AKI39_12405 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AKI39_00785 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D AKI39_00455 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D AKI39_04440 GntR family transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D AKI39_12645 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D AKI39_14560 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D AKI39_01210 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKI39_06095 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D AKI39_16890 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKI39_18705 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D AKI39_01175 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKI39_01600 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKI39_17550 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKI39_13220 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D AKI39_11865 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKI39_11870 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D AKI39_14890 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKI39_19050 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKI39_15710 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKI39_20455 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKI39_02365 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKI39_11930 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKI39_05415 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AKI39_19135 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AKI39_14950 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AKI39_17735 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AKI39_13615 2-aminoadipate aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AKI39_09235 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D AKI39_22965 dihydroorotate oxidase K05501 slmA; TetR/AcrR family transcriptional regulator
D AKI39_14240 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D AKI39_05450 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AKI39_05455 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AKI39_19085 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AKI39_07810 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AKI39_12790 hypothetical protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AKI39_02525 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D AKI39_00325 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKI39_14160 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKI39_00905 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKI39_19745 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKI39_14360 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKI39_21200 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKI39_19560 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
D AKI39_14740 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D AKI39_22940 hypothetical protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D AKI39_08085 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D AKI39_21310 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D AKI39_10300 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D AKI39_11015 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AKI39_05685 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AKI39_23435 hypothetical protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D AKI39_04945 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_05550 hypothetical protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_00280 hypothetical protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_21640 hypothetical protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_04700 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_13665 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_13670 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_22505 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKI39_11805 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKI39_12885 hypothetical protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKI39_13185 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKI39_13550 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKI39_11445 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D AKI39_21570 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D AKI39_23195 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D AKI39_13720 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D AKI39_21605 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D AKI39_15390 DNA-binding protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D AKI39_18535 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D AKI39_24080 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D AKI39_18810 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D AKI39_22745 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D AKI39_23540 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AKI39_04840 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AKI39_19100 hypothetical protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D AKI39_01880 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D AKI39_05305 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D AKI39_04390 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D AKI39_15220 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D AKI39_11745 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D AKI39_11335 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D AKI39_20735 hypothetical protein K21829 dauR; D-arginine utilization repressor
D AKI39_14510 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D AKI39_15575 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D AKI39_17830 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D AKI39_24605 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKI39_05700 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D AKI39_16990 phenylacetic acid degradation protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D AKI39_12825 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D AKI39_18040 transcriptional regulator K07734 paiB; transcriptional regulator
D AKI39_02760 hypothetical protein K07735 algH; putative transcriptional regulator
D AKI39_23445 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D AKI39_13725 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D AKI39_03020 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D AKI39_19680 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0