+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Bos mutus (wild yak)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 102280289 RNMT; mRNA cap guanine-N(7) methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 102269511 RNGTT; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 102287767 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 102286518 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 102269376 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 102274701 RAMAC; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 102264518 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 102283595 NCBP2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
E 106701171 NCBP2L; nuclear cap-binding protein subunit 2-like K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 102280416 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 102275860 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 102280529 CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 102277848 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 102271523 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X2 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 102272095 CPSF1; LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 102278408 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 102279685 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102276670 CPSF4L; LOW QUALITY PROTEIN: putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102281049 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102265153 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X11 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 102274758 WDR33; LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 102279279 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 102266876 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102270793 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102275429 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102272339 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102272895 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102283854 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102284127 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 102287326 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 138990945 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 102268756 CSTF1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 102279017 CSTF2T; LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 102281556 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 102278035 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 102283378 SYMPK; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 102269358 SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' isoform X1 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 102274497 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 102272937 SNRPE; small nuclear ribonucleoprotein E isoform X1 K11097 SNRPE; small nuclear ribonucleoprotein E
E 106700548 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 106700698 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 106701676 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 138984648 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 102273911 SNRPF; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 102279833 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 102277475 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 102271314 LSM11; U7 snRNA-associated Sm-like protein LSm11 isoform X1 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 102278408 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 102279685 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102279017 CSTF2T; LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 102281556 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 102283378 SYMPK; symplekin K06100 SYMPK; symplekin
E 102265235 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 102265952 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 102286775 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 102288162 SUPT5H; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 102279941 METTL3; N(6)-adenosine-methyltransferase catalytic subunit METTL3 isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 102287913 METTL14; N(6)-adenosine-methyltransferase non-catalytic subunit METTL14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 102270858 METTL4; N(6)-adenine-specific methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 102269245 METTL16; RNA N(6)-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 102276575 WTAP; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 106701342 pre-mRNA-splicing regulator WTAP-like isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 102283952 VIRMA; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 102278690 RBM15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 106701631 LOW QUALITY PROTEIN: putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 138984646 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 102286009 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 102274390 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X3 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 102278640 PAPOLA; poly(A) polymerase alpha isoform X2 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102281489 PAPOLG; poly(A) polymerase gamma isoform X3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102285473 PAPOLB; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102285593 TENT2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 102268737 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 102279141 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 102264994 RBM26; RNA-binding protein 26 isoform X4 K13192 RBM26; RNA-binding protein 26
E 102270453 FTO; alpha-ketoglutarate-dependent dioxygenase FTO isoform X2 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 102273698 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 102280144 TARDBP; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 102268871 DHX40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 102272855 KIN; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 102269688 METTL8; tRNA N(3)-cytidine methyltransferase METTL8, mitochondrial K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 102287644 METTL22; LOW QUALITY PROTEIN: methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 102274859 TENT5B; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 102285383 TENT5A; terminal nucleotidyltransferase 5A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 102276078 TENT5C; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 102278021 TENT5D; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 102280580 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 102281122 SRRT; LOW QUALITY PROTEIN: serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 138984775 RBM8A; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 102281131 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 102281225 MAGOHB; protein mago nashi homolog 2 K12877 MAGOH; protein mago nashi
E 102288412 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 102276014 DDX39B; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 102273569 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 102277125 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 102273907 CASC3; protein CASC3 K14323 CASC3; protein CASC3
E 102272626 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 102284907 PNN; pinin K13114 PNN; pinin
E 102277013 ACIN1; LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 102265181 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 102266714 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 102285787 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 102274386 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
E 102286972 SRRM1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 102284986 THOC1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 102267029 THO complex subunit 2-like K12879 THOC2; THO complex subunit 2
E 102274530 THOC2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 102271550 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 102288412 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 102268579 THOC5; THO complex subunit 5 isoform X4 K13174 THOC5; THO complex subunit 5
E 102285372 THOC6; THO complex subunit 6 isoform X1 K13175 THOC6; THO complex subunit 6
E 102285240 THOC7; THO complex subunit 7 isoform X1 K13176 THOC7; THO complex subunit 7
E 102278592 CHTOP; chromatin target of PRMT1 protein isoform X3 K28424 CHTOP; chromatin target of PRMT1 protein
D TREX-2 complex
E 102273252 PCID2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 102268542 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 102273817 ENY2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 102275946 CETN2; centrin-2 K10840 CETN2; centrin-2
E 102273959 CETN3; centrin-3 K16466 CETN3; centrin-3
E 102276768 MCM3AP; LOW QUALITY PROTEIN: germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 102277952 TPR; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 102270906 RAE1; mRNA export factor RAE1 K14298 RAE1; mRNA export factor
E 102272181 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 102270878 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 102284649 NUP85; nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 102272052 NUP43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 102286759 NUP50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 102268716 NUP54; nucleoporin p54 K14308 NUP54; nuclear pore complex protein Nup54
E 102266278 NUP62CL; nucleoporin-62 C-terminal-like protein isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 102282769 NUP62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 102271293 NUP88; nuclear pore complex protein Nup88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 102281722 NUP93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 102270515 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X2 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 102265101 NUP107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 102272569 NUP133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 102269513 NUP188; nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 102270023 NUP153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 102270481 NUP155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 102279046 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 102269362 NUP35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 102267533 NUP205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 102278996 NUP210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 102282802 NUP210L; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 102288310 NUP214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 102284590 POM121C; nuclear envelope pore membrane protein POM 121C K14316 POM121; nuclear pore complex protein Nup121
E 102280351 NUP58; nucleoporin p58/p45 K14307 NUPL1; nucleoporin p58/p45
E 102265253 NUP42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 102275545 NDC1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 102285050 SEH1L; nucleoporin SEH1 isoform X2 K14299 SEH1; nucleoporin SEH1
E 102285692 LOW QUALITY PROTEIN: E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 102284622 SENP2; sentrin-specific protease 2 isoform X4 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 102283038 AAAS; aladin K14320 AAAS; aladin
E 102273959 CETN3; centrin-3 K16466 CETN3; centrin-3
E 102270823 GLE1; mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 102272586 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 102273945 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 102278972 nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 102279696 NXF3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 102270915 NXT1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 102277343 NXT2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
E 102276960 NPAP1; nuclear pore-associated protein 1 K26564 NPAP1; nuclear pore-associated protein 1
D Ran-mediated transport factors
E 102280145 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 102282248 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 138984184 LOW QUALITY PROTEIN: GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 102286274 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 102265358 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 102268249 TNFSF13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 102276434 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 102271240 ELAVL4; ELAV-like protein 4 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 102279437 ELAVL2; ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 102287680 ELAVL3; ELAV-like protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 102272839 FAF2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 102271636 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 102278050 VCPKMT; protein N-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 102271821 TNPO2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 102271871 XPO1; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 102281904 XPO7; exportin-7 K18460 XPO7; exportin-7
E 102288362 RANBP17; ran-binding protein 17 isoform X1 K24115 RANBP17; Ran-binding protein 17
E 102273577 RANGAP1; ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 102265249 TAF15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
E 102265520 NUTF2; nuclear transport factor 2 K28773 NUTF2; nuclear transport factor 2
D eIF4F and regulatory proteins
E 102266436 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 102275213 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 102282841 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 102269359 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 102271131 EIF4A2; eukaryotic initiation factor 4A-II isoform X2 K03257 EIF4A; translation initiation factor 4A
E 102274059 eukaryotic initiation factor 4A-II-like K03257 EIF4A; translation initiation factor 4A
E 102277050 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 102277554 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 102280587 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 102287925 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 102274754 EIF4H; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 102278368 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 102271743 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 102283882 EIF4EBP3; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 102280925 EIF4ENIF1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 102284368 ANGEL2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 102287874 ANGEL1; protein angel homolog 1 K18729 ANGEL; protein angel
E 102270862 FXR2; RNA-binding protein FXR2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102281326 FXR1; LOW QUALITY PROTEIN: RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 102288036 FMR1; fragile X messenger ribonucleoprotein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102269972 CYFIP2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102273482 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102273408 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 102264956 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 102265612 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102275362 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102276406 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102279661 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102269043 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 138986371 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102267299 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102273401 GIGYF1; LOW QUALITY PROTEIN: GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102269236 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 102276498 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102281304 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102284606 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 102285044 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 102285950 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 102287981 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 102272564 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform X1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 102279303 polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 102273303 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 102278250 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 102268608 SKIC2; LOW QUALITY PROTEIN: superkiller complex protein 2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 102282545 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 102270612 malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 102280756 MCTS1; malignant T-cell-amplified sequence 1 isoform X3 K07575 MCTS; malignant T-cell-amplified sequence
E 102269196 DENR; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 102271536 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 102278551 A1CF; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 102278925 PYM1; partner of Y14 and mago isoform X3 K14294 WIBG; partner of Y14 and mago
E 102267737 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102270984 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102272541 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102276651 heterogeneous nuclear ribonucleoprotein A3-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102280569 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102281991 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102283163 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102284992 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102287117 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 106701625 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102264988 MSI2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 102276060 MSI1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 102282702 DAZAP1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 102280134 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 102281682 PELO; protein pelota homolog K06965 PELO; protein pelota
E 102275859 polyadenylate-binding protein 2 isoform X3 K14396 PABPN1; polyadenylate-binding protein 2
E 102280384 PABPN1L; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 102266740 ATP-dependent RNA helicase DDX19A isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 102270673 DDX19B; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 102280565 DDX25; LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 102283562 XAB2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 102279345 LOW QUALITY PROTEIN: SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 102283339 SARNP; SAP domain-containing ribonucleoprotein isoform X1 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 102284144 RCC1; regulator of chromosome condensation isoform X1 K11493 RCC1; regulator of chromosome condensation
E 102272361 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 102269925 PURA; transcriptional activator protein Pur-alpha isoform X1 K21772 PURA; transcriptional activator protein Pur-alpha
E 106700671 PURB; transcriptional regulator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 102278546 POLDIP3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 102272260 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 102273221 LENG8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 102283162 PATL2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
E 102276776 FYTTD1; UAP56-interacting factor K28772 FYTTD1; UAP56-interacting factor
C Surveillance factors
D Surveillance complex
E 102265306 ETF1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 102267530 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 102278017 LOW QUALITY PROTEIN: eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 102281953 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 102270024 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 102283316 UPF2; LOW QUALITY PROTEIN: regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 102267779 regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 102278751 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 102286064 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 102266065 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102282540 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102278265 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 102278583 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 102285183 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X2 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 102272209 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102287363 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102287455 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102287482 PPP2R2D; LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102270172 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102271235 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102282136 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X3 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102278065 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102279156 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102286395 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102287801 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102288145 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 102279798 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 102282188 SMG5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 102267758 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 102268875 SMG7; nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 102267323 SMG8; nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 102271064 SMG9; nonsense-mediated mRNA decay factor SMG9 isoform X1 K18735 SMG9; protein SMG9
E 102267299 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102273401 GIGYF1; LOW QUALITY PROTEIN: GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102282965 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 102287126 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 102279188 DHX34; probable ATP-dependent RNA helicase DHX34 isoform X1 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 102265152 GTPBP1; GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 102267024 PUM3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 102270427 MYO5B; LOW QUALITY PROTEIN: unconventional myosin-Vb K10357 MYO5; myosin V
E 102285406 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 102285696 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 102270960 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 102279475 BICD2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 102265451 EXD1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 102285564 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 102286048 ACTB; LOW QUALITY PROTEIN: actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 102283557 MBP; myelin basic protein isoform X5 K17269 MBP; myelin basic protein
E 102283001 VIM; vimentin K07606 VIM; vimentin
E 102278728 uncharacterized protein K14739 MT1_2; metallothionein 1/2
E 102279002 metallothionein-1B K14739 MT1_2; metallothionein 1/2
E 102279288 metallothionein-1C K14739 MT1_2; metallothionein 1/2
E 102279580 metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 102274304 MYC; LOW QUALITY PROTEIN: myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 138988495 GDF1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 102271522 TBX6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 138985832 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 102274049 ZBP1; Z-DNA-binding protein 1 isoform X1 K12965 ZBP1; Z-DNA binding protein 1
E 102272344 FUBP3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 102279208 FUBP1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 102279293 KHSRP; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 102282161 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 102283704 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 106701306 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 102268464 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 102269300 heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 102276625 heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 102285365 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 102286292 HAX1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 102287590 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 102267644 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102269750 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102266103 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 102273975 PTBP1; LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 102265612 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102275362 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102276406 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102279661 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 102270862 FXR2; RNA-binding protein FXR2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102281326 FXR1; LOW QUALITY PROTEIN: RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 102288036 FMR1; fragile X messenger ribonucleoprotein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102269972 CYFIP2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102273482 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102279675 PCBP2; LOW QUALITY PROTEIN: poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 102276278 PCBP4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102276423 PCBP3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102287884 CAPRIN1; caprin-1 K18743 CAPRIN1; caprin-1
E 102272613 CAPRIN2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 102282938 YBX1; Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 102268763 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 102274081 protein argonaute-1 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102274366 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102281035 AGO2; protein argonaute-2 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102282722 protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102266436 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 102275213 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 102282841 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 102270024 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 102269043 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 138986371 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102269091 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 102266571 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102270114 MEX3A; LOW QUALITY PROTEIN: RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102276431 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102277925 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102266409 FASTK; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 102267583 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 102280261 LSM14A; protein LSM14 homolog A isoform X2 K18749 LSM14; protein LSM14
E 102278319 PCBP1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 102279675 PCBP2; LOW QUALITY PROTEIN: poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 102282938 YBX1; Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 102273982 LIMD1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 102277730 WTIP; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 102278796 AJUBA; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 102271536 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 102286610 MOV10; helicase MOV-10 isoform X2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 102286398 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 102281669 TNPO1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 102279798 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 102282188 SMG5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 102267758 SMG6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 102268875 SMG7; nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 102271875 ZFP36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 102287358 ZFP36L1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 102288114 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 102270955 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 102281643 LIN28B; protein lin-28 homolog B isoform X2 K18754 LIN28; protein lin-28
E 102283586 HTT; huntingtin isoform X1 K04533 HD; huntingtin
E 102273183 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8
E 102266188 BICC1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 102267737 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102270984 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform X2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102272541 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102276651 heterogeneous nuclear ribonucleoprotein A3-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102280569 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102281991 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102283163 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102284992 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102287117 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 106701625 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102269124 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 102281757 PRKACA; LOW QUALITY PROTEIN: cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 102269325 LARP1B; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 102272849 LARP1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 102276261 ATXN2L; ataxin-2-like protein isoform X2 K23625 ATXN2; ataxin-2
E 102279571 ATXN2; ataxin-2 isoform X1 K23625 ATXN2; ataxin-2
D P-body specific factors
E 102273448 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 102272751 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 102277300 DCP1B; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102277632 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102276281 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 102273335 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 102264920 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 102270235 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102280478 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102279607 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 102265016 LSM8; LSM8 homolog, U6 small nuclear RNA associated isoform X6 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 102270418 KLC1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 102272561 KLC2; kinesin light chain 2 isoform X1 K10407 KLC; kinesin light chain
E 102284057 KLC4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 102288105 KLC3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 102270427 MYO5B; LOW QUALITY PROTEIN: unconventional myosin-Vb K10357 MYO5; myosin V
E 102285406 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 102285696 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 102269928 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 102270684 TUBA1B; tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 102280120 TUBA8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 102280742 tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 102281213 tubulin alpha-1D chain K07374 TUBA; tubulin alpha
E 138987704 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 138987928 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 138991458 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 102265612 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102275362 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102276406 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102279661 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102273408 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 102264956 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 102268549 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102273073 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102275868 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102267797 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X6 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 102287365 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 102286261 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 102266303 CNOT4; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102266193 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102279992 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X2 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102271238 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102283811 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102278848 GARRE1; granule associated Rac and RHOG effector protein 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 102285291 DIS3L2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 102285191 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 102270206 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 102264973 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 102269714 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 102271631 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 102274438 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 102277659 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 106701628 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 102280925 EIF4ENIF1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 102268751 PATL1; protein PAT1 homolog 1 isoform X3 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 138988244 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 102280436 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 102283592 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102283943 NANOS2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 102282875 NANOS3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 102283316 UPF2; LOW QUALITY PROTEIN: regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 102267779 regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 102278751 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 102286064 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 102281601 TRIM21; E3 ubiquitin-protein ligase TRIM21 isoform X1 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 102286289 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 102272606 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 102281444 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 102272574 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 102274266 ZAR1L; protein ZAR1-like K18762 ZAR1; zygote arrest protein 1
E 102272082 YTHDF2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 102273505 YTHDF1; YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 102276356 YTHDF3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 102271738 TIAL1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 102279067 TIA1; cytotoxic granule associated RNA binding protein TIA1 isoform X6 K13201 TIA1; nucleolysin TIA-1/TIAR
E 102269236 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 102276498 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102281304 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102284606 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 102285044 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 102285950 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 102287981 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 102267644 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102269750 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102270862 FXR2; RNA-binding protein FXR2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102281326 FXR1; LOW QUALITY PROTEIN: RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 102288036 FMR1; fragile X messenger ribonucleoprotein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102274049 ZBP1; Z-DNA-binding protein 1 isoform X1 K12965 ZBP1; Z-DNA binding protein 1
E 102276434 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 102264966 G3BP1; ras GTPase-activating protein-binding protein 1 isoform X2 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 102266532 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 102280897 EIF2A; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 102287362 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 102269359 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 102271131 EIF4A2; eukaryotic initiation factor 4A-II isoform X2 K03257 EIF4A; translation initiation factor 4A
E 102274059 eukaryotic initiation factor 4A-II-like K03257 EIF4A; translation initiation factor 4A
E 102273569 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 102287925 EIF4B; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 102277050 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 102277554 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 102280587 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 102264559 RPS6KA6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102271527 RPS6KA1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102278237 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102287576 RPS6KA2; ribosomal protein S6 kinase alpha-2 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102285600 RACK1; small ribosomal subunit protein RACK1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 102275265 TRAF2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 102272586 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 102273945 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 102278972 nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 102279696 NXF3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 102270629 HDAC6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 102269066 TDRD3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 102268272 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 102268962 LARP4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 102272751 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 102277300 DCP1B; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102273448 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 102269091 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 102280436 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 102283592 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102268751 PATL1; protein PAT1 homolog 1 isoform X3 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 138988244 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 102277632 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102276281 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 102273335 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 102264920 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 102270235 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102280478 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102279607 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 102265016 LSM8; LSM8 homolog, U6 small nuclear RNA associated isoform X6 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 102268763 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 102273486 XRN2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 102264435 NUDT16; U8 snoRNA-decapping enzyme isoform X2 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 102278216 DCPS; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 102276753 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 102287061 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 102265068 EXOSC2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 102285568 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 102269917 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 102284202 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 138991855 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 102270956 EXOSC7; exosome complex component RRP42 isoform X2 K12589 RRP42; exosome complex component RRP42
E 102278839 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 102273601 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 102284500 DIS3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 102280109 DIS3L; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 102281165 EXOSC10; exosome complex component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 102270670 C1D; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 102278394 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 102270938 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 102267140 TENT4A; LOW QUALITY PROTEIN: terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 102267247 TENT4B; terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 102266834 ZCCHC7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 102279402 MTREX; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 102268608 SKIC2; LOW QUALITY PROTEIN: superkiller complex protein 2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 102267876 SKIC3; superkiller complex protein 3 K12600 SKI3; superkiller protein 3
E 102280728 SKIC8; superkiller complex protein 8 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 102266193 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102279992 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X2 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102267797 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X6 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 102287365 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 102286261 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 102266303 CNOT4; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102271238 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102283811 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102273204 CNOT9; CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 102284327 CNOT10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 102285191 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 102270206 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 102283407 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 102287848 PARN; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 102287664 DHX36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102264973 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 102269714 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 102271631 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 102274438 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 102277659 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 106701628 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 102275474 CSF2; granulocyte-macrophage colony-stimulating factor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 102279918 NOCT; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 102278847 LOW QUALITY PROTEIN: 3'-5' exoribonuclease 1-like K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 102286609 ERI1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 102270012 ERI2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 102278216 DCPS; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 102265471 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 102281190 IREB2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2
E 102276753 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 102281950 NRDE2; LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 102271001 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 102286727 SAMD4B; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 102279928 FOCAD; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 102266201 RNASE1; ribonuclease pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 102285547 RNASE2; non-secretory ribonuclease K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 102286301 brain ribonuclease K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 102267046 RNASE4; ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 106701083 ribonuclease homolog K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 102266483 RNASE6; ribonuclease K6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 102269285 LOW QUALITY PROTEIN: ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 102272595 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 102282753 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 102273736 RNASE11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 102271231 ZC3H12A; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 102279801 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 102280959 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 102282557 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 102285870 DROSHA; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 102278778 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 102265407 ENO1; alpha-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102267910 ENO3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102283349 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102279702 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 102268656 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102269659 PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102285285 PFKM; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 102275239 HSPA9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 102282173 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 102265068 EXOSC2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 102287061 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 102269917 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 102270956 EXOSC7; exosome complex component RRP42 isoform X2 K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 26, 2026