+D Transcription factors KO
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Transcription Factors - Bordetella parapertussis Bpp5
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C NAC
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BN117_4526 AraC-family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D BN117_4451 AraC family regulatory protein K07506 K07506; AraC family transcriptional regulator
D BN117_3634 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D BN117_0627 LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN117_1828 putative LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN117_1942 LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN117_3747 LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN117_3777 phnR; LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN117_4328 LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN117_1957 metR; transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D BN117_2673 probable LysR-family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BN117_0231 probable LysR-family transcriptional regulator K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D BN117_3244 putative LysR-family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D BN117_0699 LysR-family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D BN117_4139 LysR family regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D BN117_2960 probable LysR-family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D BN117_4283 LysR family regulatory protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D BN117_0433 LysR family regulatory protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN117_0459 probable LysR-family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN117_3659 probable LysR-family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN117_0345 LysR family regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN117_0578 LysR family regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN117_3761 LysR-family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN117_4425 putative LysR-family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN117_4165 putative LysR-family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D BN117_2794 glpR; glycerol-3-phosphate regulon repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BN117_4168 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN117_2280 putative LacI-family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D BN117_0348 GntR family regulatory protein K03710 K03710; GntR family transcriptional regulator
D BN117_1028 putative GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN117_1062 putative transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN117_2287 probable GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN117_3195 putative GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN117_3919 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN117_0096 glcC; GntR-family transcriptional regulator K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D BN117_1511 probable GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN117_1762 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN117_2271 putative GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN117_2342 GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN117_2520 Putative regulatory protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D BN117_4123 putative TetR-family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D BN117_3528 putative TetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BN117_0474 putative TetR-family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D BN117_0587 conserved hypothetical protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D BN117_0240 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_0918 oppI; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_1277 Putative AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_2048 putative AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_2785 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_4349 AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_4515 AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN117_0947 grp; glutamate uptake regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BN117_3707 putative AsnC-family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
D BN117_2815 putative MarR-family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BN117_1474 MarR-family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
C MerR family
D BN117_2748 MerR-family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BN117_0976 putative MerR-family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D BN117_0210 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BN117_1171 fur; ferric ion uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BN117_0179 putative regulatory protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D BN117_0683 putative transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN117_3817 probable transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN117_0410 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN117_0650 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN117_1460 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN117_2501 Putative transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN117_4531 transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN117_0643 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BN117_2796 putative IclR-family regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BN117_4176 putative IclR-family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D BN117_0229 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BN117_0608 probable regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D BN117_2153 putative DNA-binding protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D BN117_2825 putative conserved DNA-binding protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D BN117_2560 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BN117_3683 arsR; probable ArsR-family transcription regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BN117_0219 ArsR family regulatory protein K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
C Other families
D BN117_0159 baf; putative biotin protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BN117_1100 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BN117_2861 prpR; propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D BN117_2894 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BN117_3119 putative transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D BN117_2302 putative sigma-54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BN117_2537 putative DNA-binding protein K07726 K07726; putative transcriptional regulator
D BN117_2699 putative DNA-binding protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D BN117_1904 putA; bifunctional proline oxidoreductase/transcriptional repressor K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D BN117_0023 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D BN117_3315 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BN117_0005 parB; probable chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BN117_1175 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D BN117_1689 paaX; phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D BN117_0988 putative enzyme-regulator fusion protein K06140 rnk; regulator of nucleoside diphosphate kinase
D BN117_2230 Hypothetical protein K07733 alpA; prophage regulatory protein
D BN117_0419 putative regulatory protein K07734 paiB; transcriptional regulator
D BN117_2272 conserved hypothetical protein K07734 paiB; transcriptional regulator
D BN117_4006 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D BN117_0177 dksA; putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D BN117_3948 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D BN117_0924 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 7, 2026
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Classification taken and modified from TRANSFAC 7.0