+E Transcription factors KO
#
Transcription Factors - Burkholderia pseudomallei 668
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D BURPS668_3504 BsaWI methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BURPS668_3935 eutR; ethanolamine operon transcriptional activator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D BURPS668_A0876 pchR; regulatory protein PchR K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D BURPS668_3164 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D BURPS668_0116 regulatory protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BURPS668_A0964 transcriptional regulator, AraC family K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D BURPS668_A0848 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D BURPS668_2729 transcriptional regulator, AraC family K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D BURPS668_A2025 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D BURPS668_A0827 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D BURPS668_0441 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A1384 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_0281 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A0274 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A0444 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A0906 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A2979 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A2989 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BURPS668_A1844 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D BURPS668_2924 metR; transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D BURPS668_A2907 lysR; transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D BURPS668_3324 oxyR; oxidative stress regulatory protein OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BURPS668_A0050 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BURPS668_A0429 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BURPS668_3425 cynR; cyn operon transcriptional activator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D BURPS668_1005 cysB; cys regulon transcriptional activator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D BURPS668_1851 cbl; cys regulon transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D BURPS668_A0296 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D BURPS668_A0475 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D BURPS668_0753 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D BURPS668_A0511 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BURPS668_1430 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BURPS668_0781 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BURPS668_3399 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BURPS668_A1095 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D BURPS668_A2709 catR; cat operon transcriptional activator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D BURPS668_A2724 benM; ben operon transcriptional regulator BenM K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D BURPS668_0729 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D BURPS668_A2090 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BURPS668_A0824 transcriptional regulator, RafR family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BURPS668_1857 rbsR; ribose operon repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BURPS668_2093 transcriptional regulator, lacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
C GntR family
D BURPS668_3313 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D BURPS668_2666 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BURPS668_0534 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BURPS668_0946 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BURPS668_A1885 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D BURPS668_A2473 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D BURPS668_3424 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BURPS668_A0554 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BURPS668_A2012 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BURPS668_A2503 transcriptional regulator, GntR family/aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BURPS668_1533 transcriptional regulator, GntR family/aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BURPS668_1424 transcriptional regulator, GntR family/aminotransferase, classes I and II K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BURPS668_A0495 transcriptional regulator, GntR family/aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BURPS668_A1071 transcriptional regulator, GntR family/aminotransferase, classes I and II K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BURPS668_A0773 transcriptional regulator, GntR family/aminotransferase, classes I and II K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BURPS668_A1682 transcriptional regulator, GntR family/aminotransferase, classes I and II K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D BURPS668_A1923 HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BURPS668_0852 bpeR; multidrug efflux pump repressor protein BpeR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D BURPS668_0183 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D BURPS668_A0479 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D BURPS668_A1058 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BURPS668_2503 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BURPS668_1888 amrR; multidrug efflux operon transcriptional regulator AmrR K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D BURPS668_A2924 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D BURPS668_0348 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_2863 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_3783 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_0896 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_1425 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_4000 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_3824 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_A1325 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_A2204 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_A1184 Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_A2461 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_A3095 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BURPS668_1375 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BURPS668_0361 lrp; leucine-responsive regulatory protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D BURPS668_A1295 bpsR; autoinducer-binding transcriptional regulator BpsR K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D BURPS668_A2215 bmpR; autoinducer-binding transcriptional regulator BmpR K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
C MarR family
D BURPS668_A2559 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BURPS668_A0596 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BURPS668_2211 transcriptional regulator, MerR family K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BURPS668_3420 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BURPS668_0867 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D BURPS668_A0480 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BURPS668_1366 transcriptional regulator, IclR family K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
C CRP/FNR family
D BURPS668_0934 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BURPS668_A0051 fnr; fumarate/nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BURPS668_A2747 transcription regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BURPS668_A1636 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BURPS668_2695 cyclic nucleotide-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D BURPS668_2600 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D BURPS668_2225 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BURPS668_2710 putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D BURPS668_A2035 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
D BURPS668_0063 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D BURPS668_3409 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D BURPS668_0428 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BURPS668_3361 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BURPS668_A0381 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D BURPS668_2958 transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D BURPS668_A2236 putative transcriptional regulator HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D BURPS668_A0033 helix-turn-helix domain protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BURPS668_A0890 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BURPS668_A0265 putative carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D BURPS668_A2569 modE; transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D BURPS668_3958 putA; bifunctional putA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D BURPS668_2068 nosR; regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D BURPS668_A2846 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D BURPS668_2300 BolA/YrbA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BURPS668_A3290 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BURPS668_3979 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BURPS668_3284 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BURPS668_0069 conserved domain protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D BURPS668_A1288 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D BURPS668_3110 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BURPS668_0103 conserved hypothetical protein K07733 alpA; prophage regulatory protein
D BURPS668_A2390 prophage CP4-57 regulatory protein (AlpA) K07733 alpA; prophage regulatory protein
D BURPS668_1423 putative FMN-binding domain protein K07734 paiB; transcriptional regulator
D BURPS668_3112 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D BURPS668_0192 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BURPS668_3195 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D BURPS668_3534 mraZ; protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0