+E Transcription factors KO
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Transcription Factors - Bordetella petrii
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D Bpet1302 putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bpet1455 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bpet1042 putative DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bpet1038 putative DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bpet1306 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Bpet1449 putative DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Bpet4641 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D Bpet0019 AraC-family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D Bpet0937 possible AraC-family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D Bpet0109 Putative HTH-type transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D Bpet4985 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D Bpet0471 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet0780 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet0312 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet2198 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet3336 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet1279 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet3203 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet2728 transcriptional regulator, LysR-family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Bpet0256 pcaQ; transcriptional regulator of pca Genes, LysR-family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D Bpet2058 metR; transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D Bpet2291 transcriptional regulator, LysR-family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Bpet4734 transcriptional regulator, LysR-family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Bpet1776 transcriptional regulator, LysR-family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Bpet0774 transcriptional regulator, LysR-family K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D Bpet4480 transcriptional regulator, LysR-family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D Bpet4776 transcriptional regulator, LysR-family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D Bpet4153 transcriptional regulator, LysR-family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D Bpet2911 transcriptional regulator, LysR-family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D Bpet2288 transcriptional regulator, LysR-family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D Bpet4507 transcriptional regulator, LysR-family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Bpet3659 transcriptional regulator, LysR-family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Bpet2257 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet3900 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet4163 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet0727 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet2432 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet1190 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet1256 transcriptional regulator, LysR-family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Bpet4484 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Bpet3918 transcriptional regulator, LysR-family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Bpet0714 transcriptional regulator, LysR-family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Bpet1402 catR1; transcriptional regulator catR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D Bpet3348 catR2; transcriptional regulator catR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D Bpet3747 catR3; transcriptional regulator catR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D Bpet3047 transcriptional regulator, LysR-family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D Bpet2588 glpR; glpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D Bpet4897 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Bpet0162 transcriptional regulator, LacI-family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D Bpet1664 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Bpet0416 transcriptional regulator, GntR-family K03710 K03710; GntR family transcriptional regulator
D Bpet0867 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Bpet1819 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Bpet2904 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Bpet0853 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Bpet2681 transcriptional regulator, GntR-family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Bpet3877 transcriptional regulator, GntR-family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Bpet4197 transcriptional regulator, GntR-family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Bpet4687 transcriptional regulator, GntR-family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Bpet4865 glcC; glc operon transcriptional activator K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D Bpet2244 transcriptional regulator, GntR-family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D Bpet0243 transcriptional regulator, GntR-family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bpet3402 transcriptional regulator, GntR-family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bpet2921 transcriptional regulator, GntR-family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bpet3002 transcriptional regulator, GntR-family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Bpet3078 transcriptional regulator, GntR-family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D Bpet4184 Putative HTH-type transcriptional regulator, AcrR-family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D Bpet0432 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D Bpet3814 transcriptional regulator, TetR-family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bpet1592 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bpet3810 transcriptional regulator, TetR-family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bpet2991 transcriptional regulator, TetR-family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bpet3001 transcriptional regulator, TetR-family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bpet1435 transcriptional regulator, TetR-family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Bpet4191 transcriptional regulator, TetR-family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D Bpet0365 transcriptional regulator, TetR-family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D Bpet2579 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet0682 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet2486 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet0026 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet0185 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet2818 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet0585 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet1830 transcriptional regulator, AsnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Bpet0710 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D Bpet4173 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
D Bpet2973 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Bpet2605 slyA; putative MarR-family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Bpet3188 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Bpet0248 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Bpet3387 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Bpet2542 cueR; transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D Bpet1549 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Bpet4793 putative regulatory protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D Bpet3204 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Bpet4527 pcaR2; transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Bpet3592 pcaR1; transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Bpet3674 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D Bpet1161 transcriptional regulator, IclR family K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
D Bpet4676 transcriptional regulator, IclR family K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
C CRP/FNR family
D Bpet4744 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Bpet3175 btr; transcriptional regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Bpet4047 probable transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D Bpet2778 unnamed protein product K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Bpet2615 putative conserved DNA-binding protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D Bpet1026 putative transcriptional regulator, ArsR-family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Bpet4553 arsR; putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D Bpet3571 aroK1; aroK1 K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D Bpet2181 predicted transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D Bpet1433 putative transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D Bpet1579 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D Bpet4809 birA; putative biotin protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Bpet0907 fis; DNA-binding protein fis. K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Bpet3503 prpR; Propionate catabolism operon regulator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D Bpet4385 ner; Mu-like prophage FluMu DNA-binding protein Ner. K07724 ner; Ner family transcriptional regulator
D Bpet2264 norR; Nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D Bpet3267 modE; Molybdenum transport protein modE. K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D Bpet2655 putA; 1-pyrroline-5-carboxylate dehydrogenase / proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D Bpet4338 nosR; regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D Bpet1708 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Bpet4974 parB; probable chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Bpet2176 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Bpet4557 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Bpet1552 hrcA; heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor
D Bpet1923 paaX; phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D Bpet1028 alpA1; putative transcriptional regulator (phage-related) K07733 alpA; prophage regulatory protein
D Bpet4314 alpA2; alpA2 K07733 alpA; prophage regulatory protein
D Bpet1439 alpA3; predicted transcriptional regulator (phage-related) K07733 alpA; prophage regulatory protein
D Bpet1289 putative transcriptional regulator (phage-related) K07733 alpA; prophage regulatory protein
D Bpet2882 unnamed protein product K07733 alpA; prophage regulatory protein
D Bpet4545 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D Bpet0244 negative transcriptional regulator K07734 paiB; transcriptional regulator
D Bpet0561 unnamed protein product K07735 algH; putative transcriptional regulator
D Bpet4795 dksA; putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D Bpet0615 predicted transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D Bpet0689 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0