+E Transcription factors KO
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Transcription Factors - Bacillus pumilus MTCC B6033
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BW16_04175 ABC transporter substrate-binding protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D BW16_19680 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D BW16_03205 transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D BW16_02040 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D BW16_06810 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D BW16_09970 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BW16_06470 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D BW16_03570 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D BW16_19150 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D BW16_17990 LysR family transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D BW16_07495 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D BW16_17540 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D BW16_09825 DNA-binding protein K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D BW16_12215 hypothetical protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D BW16_17400 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BW16_09630 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BW16_14140 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BW16_19155 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BW16_19355 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BW16_17310 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D BW16_01750 NTD biosynthesis operon regulator NtdR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BW16_16100 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D BW16_12625 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D BW16_03885 trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D BW16_19435 GntR family transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D BW16_11505 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D BW16_16820 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BW16_08795 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BW16_16450 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BW16_12490 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BW16_09665 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BW16_02175 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BW16_05615 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BW16_14435 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D BW16_13585 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D BW16_11225 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BW16_06485 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BW16_01195 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BW16_01530 transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D BW16_09255 TetR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
D BW16_14070 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D BW16_18150 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BW16_01935 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BW16_17450 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D BW16_13495 LuxR family transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D BW16_05125 transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D BW16_07095 transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BW16_02920 transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BW16_06965 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BW16_06860 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BW16_16150 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BW16_06350 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BW16_09065 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D BW16_19055 transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D BW16_04905 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D BW16_02760 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D BW16_06950 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D BW16_03675 MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BW16_11325 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BW16_12135 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D BW16_04425 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D BW16_04850 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BW16_12975 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D BW16_09460 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BW16_10110 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D BW16_11880 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D BW16_02945 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D BW16_16565 transcriptional regulator K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D BW16_03795 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D BW16_01480 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D BW16_06790 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D BW16_11835 manganese transport transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BW16_13515 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BW16_10785 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BW16_04250 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D BW16_16330 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BW16_16325 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BW16_14850 transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D BW16_16360 MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D BW16_00305 purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D BW16_02670 acetoin dehydrogenase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BW16_04340 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D BW16_19255 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
D BW16_09840 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D BW16_10375 ATPase AAA K06714 rocR; arginine utilization regulatory protein
D BW16_16445 ATPase AAA K06714 rocR; arginine utilization regulatory protein
D BW16_03065 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D BW16_08440 transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D BW16_19335 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D BW16_01175 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
D BW16_06890 DNA-binding protein K07729 K07729; putative transcriptional regulator
D BW16_05315 DNA-binding protein K07729 K07729; putative transcriptional regulator
D BW16_15075 DNA-binding protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BW16_02585 antitoxin endoai K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D BW16_19290 transcription antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D BW16_09570 transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D BW16_18915 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D BW16_19380 transcription antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D BW16_01380 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D BW16_18320 levansucrase K26932 sacT; sacPA operon transcriptional antiterminator
D BW16_07200 PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
D BW16_02325 PTS sugar transporter subunit IIA K03483 mtlR; mannitol operon transcriptional activator
D BW16_09650 PTS N-acetylgalactosamine transporter subunit IID K03483 mtlR; mannitol operon transcriptional activator
D BW16_18585 PTS fructose transporter subunit IIA K03491 licR; probable licABCH operon transcriptional regulator
D BW16_01420 transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator
C Others
D BW16_16270 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BW16_04790 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BW16_15690 transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BW16_01905 hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D BW16_07550 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BW16_00255 transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BW16_16315 transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BW16_00350 stage VI sporulation protein D K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D BW16_19815 plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BW16_19830 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BW16_08945 hypothetical protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BW16_04800 glycerol-3-phosphate responsive antiterminator GlpP K02443 glpP; glycerol uptake operon antiterminator
D BW16_11700 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BW16_10035 XylR family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BW16_12340 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D BW16_18945 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BW16_06210 thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BW16_06215 transcriptional regulator K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D BW16_00570 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D BW16_16835 membrane protein K03973 pspC; phage shock protein C
D BW16_16430 central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D BW16_19015 RNA polymerase sigma70 K05346 deoR; deoxyribonucleoside regulator
D BW16_06025 transcriptional regulator K05519 med; transcriptional activator of comK gene
D BW16_10950 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D BW16_08090 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BW16_18050 Prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D BW16_07220 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D BW16_03110 protease K07734 paiB; transcriptional regulator
D BW16_13730 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D BW16_05600 competence protein K02250 comK; competence protein ComK
D BW16_07885 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
D BW16_04320 hypothetical protein K26991 yvrL; membrane-bound negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0