+C Peptidases and inhibitors KO
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Peptidases and Inhibitors - Bacillus amyloliquefaciens LL3
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AAspartic peptidases
B Family A1: pepsin family
B Family A2: retropepsin family
B Family A5: thermopsin family
B Family A8: signal peptidase II family
C LL3_01702 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
B Family A22: presenilin family
B Family A24: type IV prepilin peptidase family
B Family A25: gpr protease family
C LL3_02749 gpr; Germination protease K06012 gpr; spore protease [EC:3.4.24.78]
B Family A26: omptin family
B Family A28
B Family A31: HybD endopeptidase family
B Family A36
C LL3_01686 spoI; protease processing pro-sigma-E K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
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ACysteine peptidases
B Family C1: papain family
B Family C2: calpain family
B Family C3: picornain family
B Family C4: NIa protease family
B Family C5
B Family C9
B Family C10: streptopain family
B Family C11: clostripain family
B Family C12: ubiquitin C-terminal hydrolase family
B Family C13: legumain family
B Family C14: caspase family
B Family C15: pyroglutamyl peptidase I family
C LL3_00250 pcp; Pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
B Family C16
B Family C19: ubiquitin-specific protease family
B Family C25: gingipain family
B Family C26: gamma-glutamyl hydrolase family
C LL3_00674 guaA; GMP synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
C LL3_00527 Putative glutamine amidotransferase-like protein yvdE K07010 K07010; putative glutamine amidotransferase
B Family C27
B Family C30
B Family C37
B Family C39
B Family C40
C LL3_01018 lytF; D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]
C LL3_01024 hypothetical protein K19224 lytE; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]
C LL3_02113 cwlS; D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase cwlS K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]
C LL3_03618 cwlO; secreted cell wall DL-endopeptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
C LL3_01401 ykfC; cell wall endopeptidase K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]
B Family C44
C LL3_00691 purF; glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C LL3_02044 gltA; glutamate synthase (large subunit) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
C LL3_00183 glmS; L-glutamine-D-fructose-6-phosphateamidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
C LL3_01167 asnO; asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
C LL3_03133 asnB; asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
B Family C45
B Family C46: hedgehog family
B Family C47: staphopain family
B Family C48: Ulp1 endopeptidase family
B Family C50: separase family
B Family C54: Aut2 peptidase family
B Family C55: YopJ protease family
B Family C56: PfpI endopeptidase family
C LL3_03185 Intracellular protease 1 K05520 yhbO; deglycase [EC:3.5.1.124]
B Family C57: vaccinia virus I7 peptidase family
B Family C58
B Family C59
C LL3_04025 yxeI; putative hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
B Family C60
C LL3_00779 ywpE; sortase-like protein K07284 srtA; sortase A [EC:3.4.22.70]
C LL3_01001 yhcS; putative secreted enzyme; sortase K07284 srtA; sortase A [EC:3.4.22.70]
B Family C63
B Family C64
B Family C65
B Family C67
B Family C69
B Family C70
B Family C75
B Family C76
B Family C78
B Family C79
B Family C82
B Family C83
B Family C85
B Family C86
B Family C88
B Family C89
B Family C97
B Family C98
B Family C110
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AGlutamic peptidases
B Family G1
B Family G4
B Family G5: prenyl protease 2 family
C LL3_02485 ypbD; putative membrane protease K07052 K07052; CAAX protease family protein
C LL3_04227 yyaK; putative integral inner membrane protein K07052 K07052; CAAX protease family protein
C LL3_00575 ydiL; putative membrane protease K07052 K07052; CAAX protease family protein
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AMetallo peptidases
B Family M1
B Family M2
B Family M3
C LL3_01233 pepF; Oligopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
B Family M4: thermolysin family
C LL3_01578 nprE; extracellular neutral metalloprotease K01400 nprE; bacillolysin [EC:3.4.24.28]
B Family M5: mycolysin family
B Family M6: immune inhibitor A family
B Family M7: snapalysin family
B Family M8: leishmanolysin family
B Family M9
B Family M10
B Family M12: astacin/adamalysin family
B Family M13: neprilysin family
B Family M14: carboxypeptidase A family
C LL3_02681 yqgT; putative gamma-D-glutamyl-L-diamino acid endopeptidase K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]
B Family M15: zinc D-Ala-D-Ala carboxypeptidase family
C LL3_02140 yodJ; D-alanyl-D-alanine carboxypeptidase lipoprotein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C LL3_00263 cwlK; Peptidoglycan L-alanyl-D-glutamate endopeptidase cwlK Flags: Precursor K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
B Family M16: pitrilysin family
B Family M17: leucyl aminopeptidase family
C LL3_03274 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
B Family M18
B Family M19: membrane dipeptidase family
B Family M20
C LL3_03088 ytjP; putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
C LL3_04040 pepT; peptidase T (tripeptidase) K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
C LL3_02579 yqjE; putative deacylase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
C LL3_01097 yhaA; putative amidohydrolase K01436 yhaA; amidohydrolase [EC:3.5.1.-]
C LL3_00349 yxeP; N-acyl-L-amino acid amidohydrolase K21613 scmP; N-acetylcysteine deacetylase [EC:3.5.1.-]
C LL3_00284 amhX; amidohydrolase K14665 amhX; amidohydrolase [EC:3.5.1.-]
C LL3_01523 dapL; N-acetyl-diaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
C LL3_03325 pucF; allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
B Family M23
C LL3_03312 hypothetical protein K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
B Family M24
C LL3_00138 mapA; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
C LL3_00792 mapB; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
C LL3_02642 yqhT; putative aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
B Family M26
B Family M27
B Family M28: aminopeptidase Y family
C LL3_03534 ywaD; double-zinc aminopeptidase K19701 ywaD; aminopeptidase YwaD [EC:3.4.11.6 3.4.11.10]
B Family M29: aminopeptidase T family
C LL3_01549 ampS; aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
B Family M32: carboxypeptidase Taq family
C LL3_02394 ypwA; metal-dependent carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
B Family M34: anthrax lethal factor family
B Family M35: deuterolysin family
B Family M36: fungalysin family
B Family M38: beta-aspartyl dipeptidase family
B Family M41: FtsH endopeptidase family
C LL3_00071 ftsH; cell-division protein and general stress protein (class III heat-shock) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
B Family M42: glutamyl aminopeptidase family
C LL3_01109 yhfE; putative endoglucanase K01269 yhfE; aminopeptidase [EC:3.4.11.-]
B Family M43: cytophagalysin family
B Family M44
B Family M48: Ste24 endopeptidase family
C LL3_01449 htpX; membrane protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
B Family M49: dipeptidyl-peptidase III family
B Family M50: S2P protease family
C LL3_02882 spoI; membrane metalloprotease K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
C LL3_01816 rseP; inner membrane zinc metalloprotease required for the extracytoplasmic stress response mediated by sigma(E) (YaeL) K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
B Family M54
B Family M55: DppA aminopeptidase family
C LL3_01394 dppA; D-alanyl-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
B Family M56
B Family M67
B Family M72
B Family M73
C LL3_02659 tasA; major biofilm matrix component K06336 tasA; spore coat-associated protein N
B Family M74
B Family M80
B Family M82
C LL3_02478 hypothetical protein K24131 prsW; protease PrsW [EC:3.4.-.-]
B Family M85
B Family M88
B Family M90
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AAsparagine peptide lyases
B Family N1
B Family N8
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AMixed peptidases
B Family P1: DmpA aminopeptidase family
B Family P2
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ASerine peptidases
B Family S1: chymotrypsin family
C LL3_00873 mpr; Extracellular metalloprotease K01318 sspA; glutamyl endopeptidase [EC:3.4.21.19]
C LL3_01392 htrA; membrane bound serine protease Do, quality control protease (heat-shock protein) K04771 degP; serine protease Do [EC:3.4.21.107]
C LL3_03420 htrB; putative serine protease YvtA K04771 degP; serine protease Do [EC:3.4.21.107]
B Family S3: togavirin family
B Family S6
B Family S7: flavivirin family
B Family S8: subtilisin family
C LL3_01118 aprE; Subtilisin BPN K01342 aprE; subtilisin [EC:3.4.21.62]
C LL3_01165 wprA; cell wall-associated protease K13274 wprA; cell wall-associated protease [EC:3.4.21.-]
C LL3_01685 bpr; bacillopeptidase F K13276 bpr; bacillopeptidase F [EC:3.4.21.-]
C LL3_01424 ispA; intracellular serine protease K13275 isp; major intracellular serine protease [EC:3.4.21.-]
C LL3_00828 bsaP; subtilisin-type proteinase K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
C LL3_03951 vpr; extracellular serine protease K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]
C LL3_03991 epr; extracellular serine protease K13277 epr; minor extracellular protease Epr [EC:3.4.21.-]
C LL3_01883 aprX; alkaline serine protease K17734 aprX; serine protease AprX [EC:3.4.21.-]
B Family S9: prolyl oligopeptidase family
B Family S10
B Family S11: D-Ala-D-Ala carboxypeptidase A family
C LL3_02532 dacF; D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C LL3_00010 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C LL3_02503 dacB; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
B Family S12: D-Ala-D-Ala carboxypeptidase B family
C LL3_00170 ybbE; putative protein precursor; beta-lactamase-like protein K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
B Family S13: D-Ala-D-Ala peptidase C family
C LL3_02030 dacC; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
B Family S14: ClpP endopeptidase family
C LL3_03598 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
B Family S15
B Family S16: lon protease family
C LL3_02906 lonA; class III heat-shock ATP-dependent LonA protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
C LL3_02907 lonB; LonB ATP-dependent protease K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
C LL3_01662 ylbL; putative degradative enzyme K07177 K07177; Lon-like protease
B Family S21: assemblin family
B Family S24: LexA family
C LL3_01957 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
B Family S26: signal peptidase I family
C LL3_02515 sipS; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C LL3_01138 sipV; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C LL3_01545 sipT; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C LL3_02660 sipW; Signal peptidase type I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
B Family S28
B Family S31
B Family S32
B Family S33
C LL3_00879 hypothetical protein K22369 EPHX4; epoxide hydrolase 4 [EC:3.3.-.-]
B Family S41: C-terminal processing peptidase family
C LL3_03658 ctpB; carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
C LL3_02137 ctpA; carboxy-terminal processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
B Family S45
B Family S49: protease IV family
C LL3_03031 sppA; signal peptide peptidase K04773 sppA; protease IV [EC:3.4.21.-]
B Family S50
B Family S51
C LL3_00949 ygaJ; putative peptidase K05995 pepE; dipeptidase E [EC:3.4.13.21]
B Family S53
B Family S54: Rhomboid family
B Family S55: SpoIVB peptidase family
C LL3_02618 spoI; regulatory membrane-associated serine protease K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
B Family S62
B Family S66
C LL3_01399 ykfA; putative L,D-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
C LL3_02085 yocD; putative carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
B Family S77: phage prohead processing peptidase family
B Family S78
C LL3_03364 prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
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AThreonine peptidases
B Family T1: proteasome family
C LL3_01774 clpQ; two-component ATP-dependent protease (N-terminal serine protease) K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
B Family T2
B Family T3: gamma-glutamyltransferase family
C LL3_02037 ggt; membrane bound gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C LL3_03753 ywrD; putative gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
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APeptidases of unknown catalytic type
B Family U32
C LL3_02820 yrrO; putative hydrolase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C LL3_02821 yrrN; putative hydrolase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
B Family U62
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APeptidase inhibitors
B Family I1: Kazal family
B Family I2: Kunitz - BPTI family
B Family I4: serpin family
B Family I11: ecotin family
B Family I17: WAP-type family
B Family I25: cystatin family
B Family I27: calpastatin family
B Family I32: IAP family
B Family I34: IA3 family
B Family I35: timp family
B Family I39: alpha2M family
B Family I47: latexin family
B Family I49: proSAAS family
B Family I51: IC family
B Family I57: staphostatin B family
B Family I63
B Family I80
C LL3_02034 hypothetical protein K23598 iseA; iseA protein
B Family I87
B Family I93
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 29, 2024
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Classification taken and modified from MEROPS