+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus amyloliquefaciens LL3

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LL3_01455 ogt; O6-alkylguanine DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LL3_03942 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LL3_04010 aag; putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LL3_00933 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LL3_02415 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LL3_03615 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LL3_03141 mutT; nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LL3_01950 yncF; putative deoxyuridine 5''-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LL3_02239 yncF; putative deoxyuridine 5'-triphosphate nucleotidohydrolase yncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LL3_01455 ogt; O6-alkylguanine DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LL3_04233 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D LL3_04232 adaB; O6-methylguanine-DNA methyltransferase AdaB K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LL3_03942 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LL3_00826 yfjP; putative DNA-modified purine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E LL3_04010 aag; putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LL3_00933 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LL3_02996 mutM; formamidopyrimidine-DNA glycosidase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LL3_02415 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LL3_04231 apurinic/apyrimidinic endonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LL3_02708 nvfO; type IV apurinic/apyrimidinic endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E LL3_02852 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LL3_02269 yorK; Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LL3_00706 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LL3_02997 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LL3_03648 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A E LL3_03649 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B E LL3_02936 uvrC; excinuclease ABC (subunit C) K03703 uvrC; excinuclease ABC subunit C E LL3_03475 helD; DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_01266 yjcD; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_00705 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_02330 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_02997 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LL3_00706 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LL3_00110 rpoB; RNA polymerase (beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LL3_00111 rpoC; RNA polymerase (beta'' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LL3_00141 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LL3_03864 rpoE; RNA polymerase (delta subunit) K03048 rpoE; DNA-directed RNA polymerase subunit delta F LL3_01729 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LL3_00057 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LL3_01863 mutS; DNA mismatch repair recognition factor K03555 mutS; DNA mismatch repair protein MutS E LL3_02947 mutS; putative DNA mismatch repair enzyme K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LL3_01864 mutL; DNA mismatch repair factor K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LL3_02625 xseA; exodeoxyribonuclease VII (large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LL3_02624 xseB; exodeoxyribonuclease VII (small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LL3_02268 yorL; putative DNA polymerase yorL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LL3_03012 dnaE; DNA polymerase III (alpha subunit) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LL3_01818 polC; DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LL3_00002 dnaN; DNA polymerase III (beta subunit) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LL3_02751 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LL3_00033 holB; DNA polymerase III delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LL3_00021 dnaX; DNA polymerase III (gamma and tau subunits) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LL3_00706 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LL3_03475 helD; DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_01266 yjcD; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_00705 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_02330 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LL3_03779 ssbB; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LL3_04235 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LL3_04073 vsr; DNA mismatch endonuclease, patch repair protein Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LL3_02836 yrrC; putative exonuclease with DNA/RNA helicase motif K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LL3_01853 recA; Protein recA K03553 recA; recombination protein RecA E LL3_02865 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E LL3_02864 ruvB; Holliday junction DNA helicase, ATP-dependent component K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LL3_01731 priA; primosomal replication factor Y (primosomal protein N'') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LL3_01151 sbcC; DNA repair exonuclease subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E LL3_01150 sbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LL3_01853 recA; Protein recA K03553 recA; recombination protein RecA E LL3_00089 radA; DNA repair protein; 6-O-methylguanine-DNA methyltransferase K04485 radA; DNA repair protein RadA/Sms E LL3_00004 recF; DNA repair and genetic recombination factor K03629 recF; DNA replication and repair protein RecF E LL3_01747 recG; branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LL3_02852 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LL3_02269 yorK; Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LL3_02722 recO; DNA double strand break repair and recombination factor K03584 recO; DNA repair protein RecO (recombination protein O) E LL3_00023 recR; Recombination protein recR K06187 recR; recombination protein RecR E LL3_02619 recN; factor for double strand breaks DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) E LL3_02412 recU; Holliday junction resolvase K03700 recU; recombination protein U E LL3_02865 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E LL3_02864 ruvB; Holliday junction DNA helicase, ATP-dependent component K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LL3_01149 addA; ATP-dependent deoxyribonuclease (subunit A) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LL3_01148 addB; ATP-dependent deoxyribonuclease (subunit B) K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E LL3_01151 sbcC; DNA repair exonuclease subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E LL3_01150 sbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E LL3_01441 ykoV; ATP-dependent DNA ligase subunit K10979 ku; DNA end-binding protein Ku E LL3_01440 ykoU; ATP-dependent DNA ligase subunit K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LL3_00007 gyrA; DNA gyrase (subunit A) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LL3_00006 gyrB; DNA gyrase (subunit B) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LL3_01771 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LL3_02464 DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta F LL3_02340 yonN; SPBc2 prophage-derived DNA-binding protein HU 2 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LL3_00591 yqaK; putative DNA recombination protein; skin element K07455 recT; recombination protein RecT F LL3_02852 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LL3_02269 yorK; Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LL3_02722 recO; DNA double strand break repair and recombination factor K03584 recO; DNA repair protein RecO (recombination protein O) F LL3_00023 recR; Recombination protein recR K06187 recR; recombination protein RecR F LL3_00706 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LL3_02486 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LL3_02090 yocI; putative ATP-dependent nucleic acid helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LL3_03648 uvrA; excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A F LL3_03649 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LL3_02576 polY; translesion synthesis (TLS-) DNA polymerase Y1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LL3_02383 uvrX; lesion bypass phage DNA polymerase K03502 umuC; DNA polymerase V C Other SOS response factors D LL3_01853 recA; Protein recA K03553 recA; recombination protein RecA D LL3_01957 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LL3_02619 recN; factor for double strand breaks DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) D LL3_03779 ssbB; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LL3_04235 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LL3_00868 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D LL3_02948 polX; DNA polymerase (family X) K02347 polX; DNA polymerase (family X) C DNA helicases D LL3_02395 ypvA; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LL3_02422 dinG; damage inducible ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LL3_03615 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LL3_03141 mutT; nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LL3_01950 yncF; putative deoxyuridine 5''-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LL3_02239 yncF; putative deoxyuridine 5'-triphosphate nucleotidohydrolase yncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LL3_02247 nrdE; Ribonucleoside-diphosphate reductase nrdEB subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LL3_01898 nrdE; ribonucleoside-diphosphate reductase (major subunit) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LL3_02243 nrdF; ribonucleoside-diphosphate reductase (minor subunit) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LL3_01899 nrdF; ribonucleoside-diphosphate reductase (minor subunit) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LL3_03016 nrnA; oligoribonuclease (nanoRNAse), 3',5'-bisphosphate nucleotidase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024