+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus velezensis YAU B9601-Y2

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MUS_1434 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MUS_4184 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MUS_4255 yxlJ; DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MUS_0885 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MUS_2478 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MUS_0517 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_3815 yvcI; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_4324 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_3348 ytkD; Nucleoside triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_0425 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_2046 yncF; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MUS_2108 yncF1; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MUS_1434 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MUS_4487 adaA; Methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D MUS_4486 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E MUS_4184 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MUS_0827 yfjP; nucleoside deoxyribosyltransferase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MUS_4255 yxlJ; DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MUS_0885 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MUS_3183 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MUS_2478 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MUS_2808 yqfS; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E MUS_3975 ywqL; deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E MUS_3025 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MUS_2021 yorK; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MUS_0679 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MUS_3184 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MUS_3848 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E MUS_3849 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E MUS_3121 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E MUS_3660 uvrD; ATP-dependent DNA helicase replicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MUS_1228 pcrA1; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MUS_0678 pcrA; DNA helicase II / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MUS_3184 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E MUS_0679 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MUS_0118 rpoB; rRNA (guanine-N2-)-methyltransferase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MUS_0119 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MUS_0148 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MUS_4091 rpoE; DNA-directed RNA polymerase K03048 rpoE; DNA-directed RNA polymerase subunit delta F MUS_1720 rpoZ; DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MUS_0061 mfd; transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MUS_1860 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E MUS_3132 mutSB; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MUS_1861 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MUS_2727 xseA; exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MUS_2726 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MUS_2022 yorL; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MUS_3204 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MUS_1813 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E MUS_0003 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MUS_2851 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MUS_0037 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MUS_0024 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MUS_0679 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MUS_3660 uvrD; ATP-dependent DNA helicase replicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MUS_1228 pcrA1; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MUS_0678 pcrA; DNA helicase II / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MUS_3999 ywpH; single-stranded DNA-binding like protein K03111 ssb; single-strand DNA-binding protein E MUS_4488 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MUS_3007 yrrC; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MUS_1849 recA; recombination protein K03553 recA; recombination protein RecA E MUS_3041 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E MUS_3040 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MUS_1722 priA; Primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E MUS_1114 yirY; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E MUS_1113 sbcD3; exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MUS_1849 recA; recombination protein K03553 recA; recombination protein RecA E MUS_0097 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E MUS_0005 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E MUS_1738 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MUS_3025 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MUS_2021 yorK; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MUS_2823 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E MUS_0026 recR; recombination protein K06187 recR; recombination protein RecR E MUS_2721 recN; DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) E MUS_2475 recU; recombination protein U K03700 recU; recombination protein U E MUS_3041 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E MUS_3040 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E MUS_1112 addA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E MUS_1111 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E MUS_1114 yirY; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E MUS_1113 sbcD3; exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MUS_1418 ykoV; putative ATP-dependent DNA ligase protein K10979 ku; DNA end-binding protein Ku E MUS_1417 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MUS_0008 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MUS_0007 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MUS_1766 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MUS_2528 hbs1; non-specific DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F MUS_1973 hbs; non-specific DNA-binding protein II (HB) (HU) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MUS_3025 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MUS_2021 yorK; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MUS_2823 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F MUS_0026 recR; recombination protein K06187 recR; recombination protein RecR F MUS_0679 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MUS_2553 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MUS_2267 yocI; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MUS_3848 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F MUS_3849 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MUS_2621 yqjW; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MUS_2680 yqjH; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MUS_1930 uvrX; UV-damage repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D MUS_1849 recA; recombination protein K03553 recA; recombination protein RecA D MUS_2114 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D MUS_2721 recN; DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) D MUS_3999 ywpH; single-stranded DNA-binding like protein K03111 ssb; single-strand DNA-binding protein D MUS_4488 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MUS_0871 recX; recombination regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D MUS_3133 yshC; DNA polymerase K02347 polX; DNA polymerase (family X) C DNA helicases D MUS_2459 ypvA; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MUS_2484 dinG; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D MUS_0517 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_3815 yvcI; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_4324 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_3348 ytkD; Nucleoside triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_0425 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MUS_2046 yncF; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MUS_2108 yncF1; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MUS_1909 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MUS_2042 nrdE1; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MUS_2044 nrdF3; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D MUS_1910 nrdF; ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MUS_3208 conserved hypothetical protein YtqI K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024