+F Chromosome and associated proteins KO
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Chromosome and Associated Proteins - Bradyrhizobium cosmicum
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AEukaryotic type
B Sister chromatid cohesion proteins
C Cohesin complex
C Adherin complex
C CTF18-RFC complex
C Fork protection complex
C Other sister chromatid cohesion factors
B Meiosis-specific proteins
C Cohesin complex and associated proteins
C Synaptonemal complex
C DSB formation-related proteins
C Others
B Nucleosome assembly factors
C Histones
C Histone chaperones
D Nucleoplasmins
D NAPs (Nucleosome assembly proteins)
D CAF-1
D FACT complex
D Other Histone chaperones and regulators
C HMG (high mobility group) proteins
B Histone modification proteins
C HATs (histone acetyltransferases)
C HAT complexes
D PCAF complex
D STAGA complex
D TFTC complex
D TIP60 complex
D HBO1 complex
D MOZ/MORF complex
D SAGA complex
D SLIK complex
D ADA-HAT complex
D HAT-A2 complex
D ATAC complex
D HATB complex
D NSL complex
D MSL complex
D NuA3 complex
D NuA4 complex
D SAS complex
C HDACs (histone deacetylases)
D Class I HDACs
D Class II HDACs
D SIRTs (sirtuins, class III HDACs)
D Class IV HDACs
C HDAC complexes
D Sin3A-HDAC complex
D BRAF-HDAC complex
D REST complex
D SHIP complex
D MiDAC complex
D SMART complex
D Other HDAC associated proteins
C HMTs (histone methyltransferases)
D HKMTs (histone lysine methyltransferases)
D PRMTs (protein arginine metyltransferases)
C HMT complexes
D COMPASS/SET1 complex
D COMPASS/SET1 complex (yeast)
D MLL-HCF complex
D MLL3/MLL4 complex
D Dot1-containing complex
D CHTOP-methylosome complex
C Histone demethylases
C Polycomb repressive complex (PRC) and associated proteins
D Canonical PRC1 (PRC1.2/1.4)
E PRC1.4 specific proteins
D Noncanonical PRC1 (PRC1.1)
D Noncanonical PRC1 (PRC1.3/1.5)
D Noncanonical PRC1 (PRC1.6)
D PRC2.1
D PRC2.2
D PR-DUB complex
D Other PRC associated proteins
C Sir proteins
C Other histone modification proteins
B Chromosome condensation proteins
C Condensin I
C Condensin II
C Other regulators of chromosome condensation
B Centromeric chromatin formation proteins
C Kinetochore proteins
D Centromere proteins
D CPC (chromosomal passenger complex)
D KMN network proteins
E MIS12 complex
E NDC80 complex
D Mis6 complex
D COMA complex
D NMS complex
E NDC80 complex
E MIND kinetochore complex
D MIS16-MIS18 complex
D DASH complex
D CBF3 complex
D Others
C SAC (spindle assembly checkpoint) factors
D Core SAC proteins
D Motor proteins
E RZZ complex
E Dynein complex
D Protein kinases
D Others
C Other centromeric chromatin formation proteins
D Shugoshin
D PP2A (protein phosphatase 2A)
B Heterochromatin formation proteins
C HP1 (heterochromatin protein 1)
C MBPs (metylated DNA binding proteins)
C Other heterochromatin formation proteins
B Gene silencing
C RISC (RNA-induced silencing complex)
C piRNA pathway
C RNA interference (RNAi) pathway
D RITS (RNA-induced transcriptional silencing) complex
D RDRC (RNA-directed RNA polymerase complex)
D Other RNAi proteins
C microRNA pathway
D Microprocessor complex
E S23_31500 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RISC loading complex
D Other miRNA pathway proteins
C Transposable elements
B Centrosome formation proteins
C Centriole proteins
C Pericentriolar materials (PCM)
D Centriolar satellite
D Other PCM proteins
C Cyclins
C Kinases and associated factors
D Kinase associated protein
C Microtubules and associated factors
D gamma-tubulin ring complex
D Other tubulins
D Dynactin complex
D BRISC complex
D Microtubule-associated proteins
C Augmin complex
C Centrosome duplication proteins
D Centriole replication proteins
D Regulators of centriole replication
D Other centrosome duplication proteins
C Nde1-Su48 complex
C LINC complex
C 3M complex
C Gypsy chromatin insulator complex
C Other centrosome associated proteins
D S23_10960 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
C Spindle formation proteins
B Sister chromatid separation proteins
C Securin and associated proteins
C Separase
C APC/C complex
C Aurora kinases
D Regulators of Aurora kinases
C TACC proteins
C Polo kinases
C Early mitotic inhibitors
B Chromatin remodeling factors
C BAF complex
C PBAF complex
C GBAF(ncBAF) complex
C CHRAC complex
C RSF complex
C WICH complex
C B-WICH complex
C NORC complex
C BRF complex
C NuRD complex
C NuRF complex
C NuRF complex (fruit fly)
C CERF complex
C SRCAP complex
C INO80 complex
C INO80 complex (yeast)
C RSC complex
C SWI/SNF complex
C SWR1 complex
C ASTRA complex
C Other chromatin remodeling factors
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AProkaryotic type
B Nucleoid associated proteins
C HNS (histone-like nucleoid structuring protein)
D S23_62560 putative regulator protein K03746 hns; DNA-binding protein H-NS
C HU (heat unstable protein)
D S23_32550 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
C IHF (integration host factor)
D S23_31910 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D S23_00910 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
C Other nucleoid associated proteins
D S23_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D S23_35230 hypothetical protein K11940 hspQ; heat shock protein HspQ
D S23_46350 hemimethylated DNA-binding region K11940 hspQ; heat shock protein HspQ
D S23_20100 putative ferritin-family protein K04047 dps; starvation-inducible DNA-binding protein
D S23_59760 Dps family DNA-binding stress response protein K04047 dps; starvation-inducible DNA-binding protein
D S23_36900 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D S23_05670 transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D S23_51830 transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D S23_58840 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D S23_62070 transcriptional regulatory protein AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
B Chromosome partitioning proteins
C MukBEF complex
C Condensin-like complex
D S23_54910 smc; putative chromosome segregation SMC protein K03529 smc; chromosome segregation protein
D S23_34120 hypothetical protein K05896 scpA; segregation and condensation protein A
D S23_34130 prokaryotic chromosome segregation and condensation protein K06024 scpB; segregation and condensation protein B
C Divisome proteins
D S23_17240 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
D S23_64030 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D S23_17130 penicillin binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D S23_02210 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D S23_17120 hypothetical protein K03586 ftsL; cell division protein FtsL
D S23_17230 putative cell division protein K03589 ftsQ; cell division protein FtsQ
D S23_17180 ftsW; cell division protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D S23_64020 FtsX; cell division protein K09811 ftsX; cell division transport system permease protein
D S23_17250 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D S23_11020 hypothetical protein K09888 zapA; cell division protein ZapA
D S23_03850 hypothetical protein K06916 zapE; cell division protein ZapE
D S23_39770 putative N-acetylmuramoyl-L-alanine amidase precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D S23_68750 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D S23_10900 acrA; RND multidrug efflux membrane permease K03585 acrA; membrane fusion protein, multidrug efflux system
D S23_13270 ragD; RagD protein K03585 acrA; membrane fusion protein, multidrug efflux system
D S23_24710 putative HlyD family secretion efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D S23_39090 acriflavin resistance protein A precursor K03585 acrA; membrane fusion protein, multidrug efflux system
D S23_39630 probable RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D S23_50780 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
C Inhibitors of FtsZ assembly
D S23_40530 minC; probable septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D S23_40520 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D S23_40510 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
C Other chromosome partitioning proteins
D S23_00700 putative ParA family partition protein K03496 parA; chromosome partitioning protein
D S23_02070 parA; chromosome partitioning protein A K03496 parA; chromosome partitioning protein
D S23_30490 hypothetical protein K03496 parA; chromosome partitioning protein
D S23_59880 putative partition protein K03496 parA; chromosome partitioning protein
D S23_02080 parB; chromosome partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D S23_27680 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D S23_31550 gyrA; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D S23_39290 gyrB; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D S23_02050 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D S23_02060 ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D S23_34330 tRNA (uracil-5-)-methyltransferase Gid K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D S23_03970 xerC; probable site-specific integrase/recombinase K03733 xerC; integrase/recombinase XerC
D S23_06110 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D S23_45070 mrp; multidrug-resistance related protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D S23_66280 probable GTP-binding protein EngB K03978 engB; GTP-binding protein
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 24, 2025