+E Transcription factors KO
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Transcription Factors - Bacillus subtilis subsp. subtilis BSP1
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D A7A1_1563 Putative HTH-type transcriptional regulator YbbB K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D A7A1_1316 Hypothetical protein YdeE K13653 K13653; AraC family transcriptional regulator
D A7A1_3301 Methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D A7A1_2428 HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D A7A1_3784 HTH-type transcriptional regulator CitR K19242 citR; LysR family transcriptional regulator, repressor for citA
D A7A1_2132 Regulatory protein Ycl K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D A7A1_0184 Putative HTH-type transcriptional regulator YwfK K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D A7A1_2424 HTH-type transcriptional regulator YofA K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D A7A1_0804 LysR family transcription regulator YrdQ K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D A7A1_0740 HTH-type transcriptional regulator YtlI K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D A7A1_2372 Transcriptional regulator FruR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D A7A1_1073 Stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D A7A1_1965 DNA-binding protein IolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D A7A1_1088 Transcriptional regulator YwpI K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D A7A1_3225 Hypothetical protein YqzB K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D A7A1_3082 Hypothetical protein YcnK K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D A7A1_1126 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A7A1_2636 Hypothetical protein YvfJ K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A7A1_1700 Catabolite control protein A CcpA K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A7A1_1650 LacI-family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A7A1_2762 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A7A1_2898 HTH-type transcriptional regulator KdgR (Kdg operon repressor) K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D A7A1_0246 LacI repressor-like protein K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D A7A1_2616 Transcriptional repressor of the ara regulon K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D A7A1_0635 Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D A7A1_1389 Hypothetical protein YdhQ K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D A7A1_2472 putative transcriptional regulator YurK K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D A7A1_3245 hypothetical protein YbgA K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D A7A1_2724 Hypothetical protein YvoA K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D A7A1_3403 putative transcriptional regulator YmfC K03710 K03710; GntR family transcriptional regulator
D A7A1_2637 Hypothetical protein YvfI K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D A7A1_3089 Transcriptiona regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D A7A1_1326 Hypothetical protein YdeL K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D A7A1_3779 Hypothetical protein YhdI K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D A7A1_1339 Hypothetical protein YdfD K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D A7A1_2188 Transcription regulator YtrA K07979 ytrA; GntR family transcriptional regulator
D A7A1_2399 Gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D A7A1_3192 Hypothetical protein YsiA K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D A7A1_1730 HTH-type transcriptional regulator YezE K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D A7A1_2405 HTH-type transcriptional regulator YxaF K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D A7A1_1930 Lincomycin operon transcriptional repressor LmrA K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D A7A1_0358 Regulatory protein YrhI K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D A7A1_1630 AsnC / Lrp family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D A7A1_1106 Hypothetical protein YwrC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D A7A1_3119 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D A7A1_0795 Transcriptional regulator AzlB K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D A7A1_1580 Regulatory protein, LuxR K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D A7A1_0004 Transcription activator GutR K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator
C MarR family
D A7A1_1071 Hypothetical protein YwoH K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D A7A1_3729 Protease production regulatory protein Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D A7A1_1478 Hypothetical protein YkoM K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D A7A1_1511 Hypothetical protein YkvE K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D A7A1_1459 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D A7A1_3336 HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D A7A1_3771 HTH-type transcriptional regulator CueR K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D A7A1_3641 Multidrug-efflux transporter 1 regulator K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
D A7A1_1053 Transcriptional activator K21743 mta; MerR family transcriptional regulator, multidrug-efflux activator
D A7A1_0341 Mercuric resistance operon regulatory protein YraB K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D A7A1_1475 HTH-type transcriptional regulator TnrA K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D A7A1_1782 HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D A7A1_3046 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D A7A1_3531 Zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D A7A1_0308 Peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D A7A1_3789 HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D A7A1_0394 HTH-type transcriptional regulator YrzC K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D A7A1_1335 Hypothetical protein YdeT K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D A7A1_2782 Hypothetical protein YozA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D A7A1_2598 Hypothetical protein YvbA K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D A7A1_3580 HTH-type transcriptional regulator SinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D A7A1_2657 Transcriptional regulator YveJ K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D A7A1_0588 Transcriptional regulator YfiO K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D A7A1_0220 Strong similarity to putative transcriptional regulator of the PadR family K10947 K10947; PadR family transcriptional regulator
D A7A1_0923 Transcriptional regulator PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D A7A1_3590 Transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D A7A1_0599 HTH-type transcriptional regulator glvR (Glv operon regulator protein) K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D A7A1_2933 Bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D A7A1_3676 Hypothetical protein YhjP K11925 sgrR; SgrR family transcriptional regulator
D A7A1_2586 Hypothetical protein YvaO K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D A7A1_2585 Transcriptional repressor RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D A7A1_2217 Hypothetical protein YuaC K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D A7A1_2593 Hypothetical protein YvaV K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D A7A1_2603 Hypothetical protein K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D A7A1_0352 Hypothetical protein YrhO K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D A7A1_1822 Pur operon repressor PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D A7A1_0607 Transcriptional activator of acetoin operon AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D A7A1_3180 Hypothetical protein YsfB K02647 cdaR; carbohydrate diacid regulator
D A7A1_1842 Redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D A7A1_3468 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D A7A1_2744 Hypothetical protein YozG K07727 K07727; putative transcriptional regulator
D A7A1_1307 Transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D A7A1_1398 Antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D A7A1_2022 Transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D A7A1_2089 Levansucrase and sucrase synthesis operon antiterminator K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator
D A7A1_0226 SacPA operon antiterminator K26932 sacT; sacPA operon transcriptional antiterminator
D A7A1_1534 Transcription antiterminator K03480 glcT; transcriptional antiterminator
D A7A1_1639 Transcriptional regulator YdaA K03483 mtlR; mannitol operon transcriptional activator
D A7A1_0032 Transcriptional regulator K02538 manR; mannose operon transcriptional activator
D A7A1_2067 Transcriptional regulator of the licABCH operon K03491 licR; probable licABCH operon transcriptional regulator
C Others
D A7A1_2570 Hypothetical protein YvgZ K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D A7A1_2456 Purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D A7A1_1875 Hypothetical protein YcgP K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D A7A1_0580 Putative transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D A7A1_1812 Transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D A7A1_1829 Stage V sporulation protein SpoVT K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D A7A1_1282 Hypothetical protein yyaA K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D A7A1_1279 Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D A7A1_1312 Hypothetical protein YdeB K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D A7A1_3800 Glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D A7A1_3617 Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D A7A1_3201 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D A7A1_0982 Thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D A7A1_0983 Regulatory protein TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D A7A1_0123 Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D A7A1_2614 Central glycolytic gene regulator K05311 cggR; central glycolytic genes regulator
D A7A1_1999 Deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator
D A7A1_0947 Transcriptional activator protein Med K05519 med; transcriptional activator of comK gene
D A7A1_0478 PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D A7A1_0181 Prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D A7A1_1538 Transcriptional regulator SplA K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D A7A1_2326 Negative regulator of protease synthase and sporulation K07734 paiB; transcriptional regulator
D A7A1_3147 Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D A7A1_3692 Competence transcription factor ComK K02250 comK; competence protein ComK
D A7A1_0513 Hypothetical protein MraZ K03925 mraZ; transcriptional regulator MraZ
D A7A1_2542 Hypothetical protein YvrL K26991 yvrL; membrane-bound negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0