+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus subtilis subsp. subtilis BSP1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D A7A1_1498 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E A7A1_0216 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A7A1_2065 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E A7A1_0298 Hypothetical protein YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A7A1_2923 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D A7A1_2698 Hypothetical protein YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A7A1_2171 Nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A7A1_1622 Mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A7A1_3314 Hypothetical protein YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D A7A1_1498 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A7A1_3301 Methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D A7A1_3300 Methylated-DNA--protein-cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E A7A1_0216 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A7A1_0617 Hypothetical protein YfjP K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E A7A1_3302 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E A7A1_2065 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E A7A1_0298 Hypothetical protein YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A7A1_0773 Formidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E A7A1_2923 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E A7A1_1274 Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E A7A1_3528 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E A7A1_1100 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E A7A1_0404 Hypothetical protein YrvE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E A7A1_0772 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E A7A1_1210 Excinuclease ABC, subunit B K03701 uvrA; excinuclease ABC subunit A E A7A1_1209 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E A7A1_2562 Hypothetical protein YvgS K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A7A1_3126 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A7A1_1000 Hypothetical protein YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A7A1_0772 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F A7A1_0099 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F A7A1_0098 RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F A7A1_0063 DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F A7A1_2726 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F A7A1_3516 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F A7A1_1828 Mfd (Mutation frequency decline) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E A7A1_3383 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E A7A1_3189 DNA mismatch repair protein MutSB K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E A7A1_3382 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E A7A1_3612 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E A7A1_3613 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E A7A1_0758 Hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E A7A1_0759 Hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E A7A1_3426 DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E A7A1_1291 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E A7A1_0873 Hypothetical protein YqeN K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E A7A1_1806 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E A7A1_1234 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E A7A1_2562 Hypothetical protein YvgS K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A7A1_3126 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A7A1_1000 Hypothetical protein YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A7A1_1276 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A7A1_1087 Hypothetical protein YwpH K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E A7A1_0390 Putative exodeoxyribonuclease V alpha subunit YrrC K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E A7A1_3393 RecA protein K03553 recA; recombination protein RecA E A7A1_0416 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A7A1_0415 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E A7A1_3514 Primosomal protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E A7A1_0314 Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E A7A1_0313 Exonuclease - like protein SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E A7A1_3393 RecA protein K03553 recA; recombination protein RecA E A7A1_0119 DNA repair - like proteinRadA K04485 radA; DNA repair protein RadA/Sms E A7A1_1293 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E A7A1_3498 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A7A1_0404 Hypothetical protein YrvE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E A7A1_3222 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E A7A1_1236 Recombination protein RecR K06187 recR; recombination protein RecR E A7A1_3618 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E A7A1_2920 Recombination protein U K03700 recU; recombination protein U E A7A1_0416 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A7A1_0415 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E A7A1_0312 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E A7A1_0311 ATP-dependent nuclease subunit B AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E A7A1_0314 Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E A7A1_0313 Exonuclease - like protein SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E A7A1_1485 Hypothetical protein YkoV K10979 ku; DNA end-binding protein Ku E A7A1_1484 Hypothetical protein YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F A7A1_1296 DNA gyrase protein GyrA (subunit A) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F A7A1_1295 DNA gyrase protein GyrA (subunit B) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F A7A1_3473 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F A7A1_2968 Non-specific DNA-binding protein Hbsu K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F A7A1_0404 Hypothetical protein YrvE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F A7A1_3222 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F A7A1_1236 Recombination protein RecR K06187 recR; recombination protein RecR F A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F A7A1_2991 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F A7A1_1210 Excinuclease ABC, subunit B K03701 uvrA; excinuclease ABC subunit A F A7A1_1209 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D A7A1_3656 DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D A7A1_3393 RecA protein K03553 recA; recombination protein RecA D A7A1_0673 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D A7A1_3618 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D A7A1_1276 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A7A1_1087 Hypothetical protein YwpH K03111 ssb; single-strand DNA-binding protein D A7A1_0287 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D A7A1_3188 Hypothetical protein YshC K02347 polX; DNA polymerase (family X) C DNA helicases D A7A1_2901 ATP-dependent helicase YpvA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D A7A1_2929 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D A7A1_2698 Hypothetical protein YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A7A1_2171 Nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A7A1_1622 Mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A7A1_3314 Hypothetical protein YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D A7A1_1297 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A7A1_1298 Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D A7A1_0755 Hypothetical protein YtqI K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024