+F Repair protein KO
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DNA Repair and Recombination Proteins - Bacillus subtilis subsp. subtilis BSP1
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D A7A1_1498 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E A7A1_0216 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E A7A1_2065 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E A7A1_0298 Hypothetical protein YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E A7A1_2923 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D A7A1_2698 Hypothetical protein YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A7A1_2171 Nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A7A1_1622 Mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A7A1_3314 Hypothetical protein YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D A7A1_1498 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D A7A1_3301 Methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D A7A1_3300 Methylated-DNA--protein-cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E A7A1_0216 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E A7A1_0617 Hypothetical protein YfjP K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E A7A1_3302 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E A7A1_2065 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E A7A1_0298 Hypothetical protein YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E A7A1_0773 Formidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E A7A1_2923 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E A7A1_1274 Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E A7A1_3528 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E A7A1_1100 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E A7A1_0404 Hypothetical protein YrvE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E A7A1_0772 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E A7A1_1210 Excinuclease ABC, subunit B K03701 uvrA; excinuclease ABC subunit A
E A7A1_1209 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E A7A1_2562 Hypothetical protein YvgS K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A7A1_3126 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A7A1_1000 Hypothetical protein YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A7A1_0772 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F A7A1_0099 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F A7A1_0098 RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F A7A1_0063 DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F A7A1_2726 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
F A7A1_3516 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F A7A1_1828 Mfd (Mutation frequency decline) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E A7A1_3383 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E A7A1_3189 DNA mismatch repair protein MutSB K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E A7A1_3382 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E A7A1_3612 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E A7A1_3613 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E A7A1_0758 Hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E A7A1_0759 Hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E A7A1_3426 DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E A7A1_1291 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E A7A1_0873 Hypothetical protein YqeN K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E A7A1_1806 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E A7A1_1234 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E A7A1_2562 Hypothetical protein YvgS K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A7A1_3126 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A7A1_1000 Hypothetical protein YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A7A1_1276 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E A7A1_1087 Hypothetical protein YwpH K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E A7A1_0390 Putative exodeoxyribonuclease V alpha subunit YrrC K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E A7A1_3393 RecA protein K03553 recA; recombination protein RecA
E A7A1_0416 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E A7A1_0415 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E A7A1_3514 Primosomal protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E A7A1_0314 Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E A7A1_0313 Exonuclease - like protein SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E A7A1_3393 RecA protein K03553 recA; recombination protein RecA
E A7A1_0119 DNA repair - like proteinRadA K04485 radA; DNA repair protein RadA/Sms
E A7A1_1293 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E A7A1_3498 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E A7A1_0404 Hypothetical protein YrvE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E A7A1_3222 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E A7A1_1236 Recombination protein RecR K06187 recR; recombination protein RecR
E A7A1_3618 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E A7A1_2920 Recombination protein U K03700 recU; recombination protein U
E A7A1_0416 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E A7A1_0415 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E A7A1_0312 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E A7A1_0311 ATP-dependent nuclease subunit B AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E A7A1_0314 Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E A7A1_0313 Exonuclease - like protein SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E A7A1_1485 Hypothetical protein YkoV K10979 ku; DNA end-binding protein Ku
E A7A1_1484 Hypothetical protein YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F A7A1_1296 DNA gyrase protein GyrA (subunit A) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F A7A1_1295 DNA gyrase protein GyrA (subunit B) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F A7A1_3473 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F A7A1_2968 Non-specific DNA-binding protein Hbsu K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F A7A1_0404 Hypothetical protein YrvE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F A7A1_3222 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F A7A1_1236 Recombination protein RecR K06187 recR; recombination protein RecR
F A7A1_3127 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F A7A1_2991 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F A7A1_1210 Excinuclease ABC, subunit B K03701 uvrA; excinuclease ABC subunit A
F A7A1_1209 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D A7A1_3656 DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D A7A1_3393 RecA protein K03553 recA; recombination protein RecA
D A7A1_0673 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D A7A1_3618 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D A7A1_1276 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D A7A1_1087 Hypothetical protein YwpH K03111 ssb; single-strand DNA-binding protein
D A7A1_0287 Regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D A7A1_3188 Hypothetical protein YshC K02347 polX; DNA polymerase (family X)
C DNA helicases
D A7A1_2901 ATP-dependent helicase YpvA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D A7A1_2929 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D A7A1_2698 Hypothetical protein YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A7A1_2171 Nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A7A1_1622 Mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A7A1_3314 Hypothetical protein YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D A7A1_1297 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D A7A1_1298 Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D A7A1_0755 Hypothetical protein YtqI K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024