+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus subtilis BSn5

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BSn5_18810 O6-alkylguanine DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BSn5_09985 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BSn5_10330 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BSn5_16180 A/G-specific adenine glycosylase or DNA-(apurinic or apyrimidinic site) lyase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BSn5_01645 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BSn5_08325 putative triphosphate pyrophosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSn5_06155 nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSn5_13785 putative NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSn5_00135 putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BSn5_18810 O6-alkylguanine DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BSn5_12500 methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BSn5_12505 methylated-DNA--protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BSn5_09985 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BSn5_12495 DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BSn5_15905 putative DNA-modified purine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BSn5_10330 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BSn5_16180 A/G-specific adenine glycosylase or DNA-(apurinic or apyrimidinic site) lyase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BSn5_05370 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BSn5_01645 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BSn5_11460 apurinic/apyrimidinic endonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BSn5_03120 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E BSn5_09005 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E BSn5_04610 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BSn5_15215 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BSn5_05375 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BSn5_08500 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BSn5_08505 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BSn5_05070 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BSn5_17835 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSn5_15210 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSn5_07645 DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSn5_05375 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BSn5_15215 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BSn5_12110 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BSn5_12115 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BSn5_12295 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BSn5_09530 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F BSn5_19955 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BSn5_11845 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BSn5_20630 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BSn5_05115 recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BSn5_20635 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BSn5_02700 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BSn5_02695 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BSn5_05445 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BSn5_20405 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BSn5_11565 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BSn5_03340 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BSn5_11725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BSn5_11655 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BSn5_15215 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BSn5_17835 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSn5_15210 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSn5_07645 DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSn5_09085 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BSn5_11470 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BSn5_11085 putative adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E BSn5_14680 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BSn5_04535 putative exonuclease with DNA/RNA helicase motif protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BSn5_20575 recA; recombinase A K03553 recA; recombination protein RecA E BSn5_04675 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BSn5_04670 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BSn5_19965 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BSn5_17210 DNA ATP-dependent repair enzyme K03546 sbcC; DNA repair protein SbcC/Rad50 E BSn5_17205 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BSn5_20575 recA; recombinase A K03553 recA; recombination protein RecA E BSn5_12005 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BSn5_11575 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E BSn5_20045 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BSn5_04610 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BSn5_03190 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BSn5_11665 recR; recombination protein RecR K06187 recR; recombination protein RecR E BSn5_02670 factor for double strand breaks DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) E BSn5_01630 recU; Holliday junction-specific endonuclease K03700 recU; recombination protein U E BSn5_04675 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BSn5_04670 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E BSn5_17200 ATP-dependent deoxyribonuclease (subunit A) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BSn5_17195 ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BSn5_17210 DNA ATP-dependent repair enzyme K03546 sbcC; DNA repair protein SbcC/Rad50 E BSn5_17205 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BSn5_18740 ATP-dependent DNA ligase subunit K10979 ku; DNA end-binding protein Ku E BSn5_18735 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BSn5_11590 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BSn5_11585 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BSn5_20170 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BSn5_01875 non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BSn5_03790 putative DNA recombination protein; skin element K07455 recT; recombination protein RecT F BSn5_04610 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BSn5_03190 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BSn5_11665 recR; recombination protein RecR K06187 recR; recombination protein RecR F BSn5_15215 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BSn5_00940 putative ATP-dependent nucleic acid helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BSn5_02000 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BSn5_08500 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BSn5_08505 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BSn5_02465 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BSn5_20575 recA; recombinase A K03553 recA; recombination protein RecA D BSn5_00255 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BSn5_02670 factor for double strand breaks DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) D BSn5_09085 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BSn5_11470 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BSn5_16125 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BSn5_05120 hypothetical protein K02347 polX; DNA polymerase (family X) C DNA helicases D BSn5_01545 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BSn5_01675 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BSn5_08325 putative triphosphate pyrophosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSn5_06155 nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSn5_13785 putative NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSn5_00135 putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BSn5_20815 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BSn5_20820 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BSn5_05465 oligoribonuclease (nanoRNAse), 3',5'-bisphosphate nucleotidase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024