+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus sonorensis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D S101395_03406 mgmT; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E S101395_00374 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E S101395_00297 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E S101395_01082 mutY; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E S101395_02236 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D S101395_04092 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_04391 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_04944 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_00675 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_01296 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_03960 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D S101395_02656 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D S101395_02739 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D S101395_03406 mgmT; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D S101395_01660 adaA; Bifunctional transcriptional activator/DNA repair enzyme AdaA K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D S101395_01659 adaB; Methylated-DNA--[protein]-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E S101395_00374 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E S101395_01029 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E S101395_00297 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E S101395_01082 mutY; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E S101395_01442 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E S101395_02236 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E S101395_01833 Deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E S101395_01827 Deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E S101395_01603 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E S101395_02772 Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E S101395_01441 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E S101395_00648 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A E S101395_00647 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B E S101395_01502 UvrABC system protein K03703 uvrC; excinuclease ABC subunit C E S101395_03572 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E S101395_04261 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E S101395_00907 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E S101395_01441 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F S101395_00139 rpoB; DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F S101395_00140 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F S101395_00174 rpoA; DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F S101395_00425 putative DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F S101395_03162 rpoZ; DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F S101395_00069 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E S101395_03024 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E S101395_01494 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E S101395_03023 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E S101395_01996 xseA; Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E S101395_01997 xseB; Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E S101395_01427 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E S101395_02769 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E S101395_02771 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E S101395_03073 polC; DNA-directed DNA polymerase K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E S101395_00002 dnaN; DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E S101395_01785 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E S101395_00045 holB; DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E S101395_03971 dnaQ; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E S101395_00028 dnaX; DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E S101395_03572 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E S101395_04261 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E S101395_00907 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E S101395_05061 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E S101395_00520 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E S101395_01619 recD; Exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E S101395_03035 Protein RecA K03553 recA; recombination protein RecA E S101395_01590 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E S101395_01591 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E S101395_01153 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E S101395_03968 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E S101395_03160 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E S101395_03678 Nuclease SbcCD subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E S101395_03679 Nuclease SbcCD subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E S101395_03035 Protein RecA K03553 recA; recombination protein RecA E S101395_00120 DNA repair protein RadA like protein K04485 radA; DNA repair protein RadA/Sms E S101395_00004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E S101395_03145 recG; DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E S101395_01603 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E S101395_02772 Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E S101395_01815 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E S101395_00030 Recombination protein RecR K06187 recR; recombination protein RecR E S101395_02002 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E S101395_02239 Holliday junction resolvase RecU K03700 recU; recombination protein U E S101395_01590 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E S101395_01591 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E S101395_01153 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E S101395_03968 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E S101395_03680 addA; ATP-dependent helicase/nuclease subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E S101395_03681 addB; ATP-dependent helicase/deoxyribonuclease subunit K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E S101395_03678 Nuclease SbcCD subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E S101395_03679 Nuclease SbcCD subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E S101395_03422 Non-like proteinous end joining protein Ku K10979 ku; DNA end-binding protein Ku E S101395_03423 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F S101395_00006 gyrA; DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F S101395_00005 gyrB; DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F S101395_03121 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F S101395_02189 DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F S101395_01890 Protein RecT K07455 recT; recombination protein RecT F S101395_01603 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F S101395_02772 Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F S101395_01815 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F S101395_00030 Recombination protein RecR K06187 recR; recombination protein RecR F S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F S101395_02165 recQ; DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F S101395_02420 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F S101395_00648 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A F S101395_00647 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D S101395_02032 dpo4; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D S101395_02074 Putative UV-damage repair protein UvrX K03502 umuC; DNA polymerase V C Other SOS response factors D S101395_03035 Protein RecA K03553 recA; recombination protein RecA D S101395_04362 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D S101395_00762 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D S101395_02620 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D S101395_02002 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D S101395_05061 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D S101395_00520 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D S101395_01071 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D S101395_01493 DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) C DNA helicases D S101395_02229 dinG; DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D S101395_02256 DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D S101395_04092 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_04391 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_04944 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_00675 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_01296 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D S101395_03960 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D S101395_02656 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D S101395_02739 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D S101395_03962 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D S101395_01159 nrdA; Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D S101395_02746 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D S101395_02747 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D S101395_02933 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D S101395_03961 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D S101395_01160 nrdB; Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D S101395_02744 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D S101395_02932 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D S101395_01423 Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024