+F Repair protein KO
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DNA Repair and Recombination Proteins - Bacillus sonorensis
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D S101395_03406 mgmT; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E S101395_00374 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E S101395_00297 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E S101395_01082 mutY; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E S101395_02236 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D S101395_04092 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_04391 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_04944 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_00675 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_01296 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_03960 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D S101395_02656 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D S101395_02739 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D S101395_03406 mgmT; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D S101395_01660 adaA; Bifunctional transcriptional activator/DNA repair enzyme AdaA K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D S101395_01659 adaB; Methylated-DNA--[protein]-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E S101395_00374 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E S101395_01029 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E S101395_00297 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E S101395_01082 mutY; putative A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E S101395_01442 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E S101395_02236 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E S101395_01833 Deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E S101395_01827 Deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E S101395_01603 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E S101395_02772 Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E S101395_01441 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E S101395_00648 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A
E S101395_00647 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B
E S101395_01502 UvrABC system protein K03703 uvrC; excinuclease ABC subunit C
E S101395_03572 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E S101395_04261 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E S101395_00907 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E S101395_01441 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
E S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F S101395_00139 rpoB; DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F S101395_00140 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F S101395_00174 rpoA; DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F S101395_00425 putative DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F S101395_03162 rpoZ; DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F S101395_00069 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E S101395_03024 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E S101395_01494 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E S101395_03023 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E S101395_01996 xseA; Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E S101395_01997 xseB; Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E S101395_01427 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E S101395_02769 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E S101395_02771 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E S101395_03073 polC; DNA-directed DNA polymerase K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E S101395_00002 dnaN; DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E S101395_01785 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E S101395_00045 holB; DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E S101395_03971 dnaQ; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E S101395_00028 dnaX; DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E S101395_03572 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E S101395_04261 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E S101395_00907 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E S101395_05061 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E S101395_00520 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E S101395_01619 recD; Exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E S101395_03035 Protein RecA K03553 recA; recombination protein RecA
E S101395_01590 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E S101395_01591 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E S101395_01153 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E S101395_03968 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E S101395_03160 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E S101395_03678 Nuclease SbcCD subunit K03546 sbcC; DNA repair protein SbcC/Rad50
E S101395_03679 Nuclease SbcCD subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E S101395_03035 Protein RecA K03553 recA; recombination protein RecA
E S101395_00120 DNA repair protein RadA like protein K04485 radA; DNA repair protein RadA/Sms
E S101395_00004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E S101395_03145 recG; DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E S101395_01603 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E S101395_02772 Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E S101395_01815 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E S101395_00030 Recombination protein RecR K06187 recR; recombination protein RecR
E S101395_02002 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E S101395_02239 Holliday junction resolvase RecU K03700 recU; recombination protein U
E S101395_01590 ruvA; DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E S101395_01591 ruvB; DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E S101395_01153 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E S101395_03968 Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E S101395_03680 addA; ATP-dependent helicase/nuclease subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E S101395_03681 addB; ATP-dependent helicase/deoxyribonuclease subunit K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E S101395_03678 Nuclease SbcCD subunit K03546 sbcC; DNA repair protein SbcC/Rad50
E S101395_03679 Nuclease SbcCD subunit K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E S101395_03422 Non-like proteinous end joining protein Ku K10979 ku; DNA end-binding protein Ku
E S101395_03423 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F S101395_00006 gyrA; DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F S101395_00005 gyrB; DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F S101395_03121 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F S101395_02189 DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F S101395_01890 Protein RecT K07455 recT; recombination protein RecT
F S101395_01603 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F S101395_02772 Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F S101395_01815 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F S101395_00030 Recombination protein RecR K06187 recR; recombination protein RecR
F S101395_00908 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F S101395_02165 recQ; DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F S101395_02420 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F S101395_00648 UvrABC system protein K03701 uvrA; excinuclease ABC subunit A
F S101395_00647 UvrABC system protein K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D S101395_02032 dpo4; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D S101395_02074 Putative UV-damage repair protein UvrX K03502 umuC; DNA polymerase V
C Other SOS response factors
D S101395_03035 Protein RecA K03553 recA; recombination protein RecA
D S101395_04362 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D S101395_00762 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D S101395_02620 Repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D S101395_02002 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D S101395_05061 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D S101395_00520 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D S101395_01071 Regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D S101395_01493 DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X)
C DNA helicases
D S101395_02229 dinG; DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D S101395_02256 DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D S101395_04092 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_04391 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_04944 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_00675 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_01296 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D S101395_03960 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D S101395_02656 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D S101395_02739 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D S101395_03962 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D S101395_01159 nrdA; Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D S101395_02746 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D S101395_02747 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D S101395_02933 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D S101395_03961 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D S101395_01160 nrdB; Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D S101395_02744 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D S101395_02932 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D S101395_01423 Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024