+E Transcription factors KO #

  Transcription Factors - Bacillus subtilis subsp. spizizenii W23

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D BSUW23_09675 putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D BSUW23_20035 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BSUW23_00850 ybbB; putative transcriptional regulator (AraC/XylS family) protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon D BSUW23_02560 ydeE; putative transcriptional regulator (AraC/XylS family) protein K13653 K13653; AraC family transcriptional regulator C LysR family D BSUW23_09825 gltC; transcriptional regulator (LysR family) protein K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D BSUW23_04760 citR; transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA D BSUW23_00965 rhiA; probable transcriptional regulator of the rhizocticin synthesis genes K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D BSUW23_01865 yclA; putative transcriptional regulator (LysR family) protein K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D BSUW23_18595 cysL; regulator of sulfur assimilation CysL, activates cysJI expression K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D BSUW23_07385 fruR; transcriptional regulator (DeoR family) protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D BSUW23_17935 spoIIID; transcriptional regulator K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D BSUW23_19845 iolR; transcriptional regulator (DeoR family) protein K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D BSUW23_17865 glcR; transcriptional regulator (DeoR family) protein K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D BSUW23_12510 ccpN; negative regulator of gluconeogenesis K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D BSUW23_02045 ycnK; putative transcriptional regulator (DeoR family) protein K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor C LacI family D BSUW23_14415 ccpA; transcriptional regulator (Lacl family) protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSUW23_14665 msmR; transcriptional regulator (LacI family) protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSUW23_16795 ganR; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSUW23_17650 rbsR; transcriptional regulator (LacI family) protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSUW23_10835 kdgR; Kdg operon transcriptional regulator (LacI family) protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D BSUW23_05355 yhjM; transcriptional regulator of the ntd operon; (LacI family) protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BSUW23_06300 exuR; transcriptional regulator (LacI family) protein K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor C GntR family D BSUW23_16685 araR; transcriptional repressor of the ara regulon (LacI family) protein K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D BSUW23_03960 treR; transcriptional regulator (GntR family) protein K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D BSUW23_20015 yydK; putative transcriptional regulator (GntR family) protein K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA D BSUW23_02995 gmuR; GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D BSUW23_15900 frlR; putative DNA-binding transcriptional regulator K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D BSUW23_01205 ybgA; putative transcriptional regulator (GntR family) protein K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator D BSUW23_17170 yvoA; transcriptional regulator (GntR family) protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BSUW23_08660 ymfC; putative transcriptional regulator (GntR family) protein K03710 K03710; GntR family transcriptional regulator D BSUW23_16800 yvfI; putative transcriptional regulator (GntR family) protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSUW23_01280 ycbG; transcriptional regulator (GntR family) protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSUW23_12900 transcriptional regulator, GntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSUW23_02600 ydeL; putative PLP-dependent transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BSUW23_02760 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BSUW23_04785 yhdI; putative PLP-dependent transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BSUW23_02010 gabR; transcriptional regulator (GntR/MocR family) with PLP binding site K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BSUW23_02660 ydfD; putative PLP-dependent transcriptional regulator K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC D BSUW23_14765 ytrA; transcriptional regulator (GntR family) protein K07979 ytrA; GntR family transcriptional regulator D BSUW23_19970 gntR; gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor C TetR/AcrR family D BSUW23_13850 fadR; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D BSUW23_03490 yezE; putative transcriptional regulator (TetR family) protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BSUW23_01375 lmrA; transcriptional repressor of lmrAB and yxaGH operons K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D BSUW23_19925 yxaF; transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D BSUW23_02855 transcriptional regulator, TetR family protein K21453 icaR; TetR/AcrR family transcriptional regulator, biofilm operon repressor D BSUW23_13130 bscR; transcriptional regulator for cypB K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon C Lrp/AsnC family D BSUW23_02590 LrpA-like transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSUW23_02200 lrpC; transcriptional regulator (Lrp/AsnC family) protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSUW23_03315 yezC; putative transcriptional regulator (Lrp/AsnC family) protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSUW23_17740 ywrC; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D BSUW23_13780 gerE; transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein D BSUW23_03095 gutR; transcriptional regulator of the glucitol operon K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator C MarR family D BSUW23_17940 ywoH; putative transcriptional regulator (MarR family) protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BSUW23_05050 scoC; transcriptional regulator of extracellular protease production and sporulation (MarR family) K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr D BSUW23_06845 ykoM; putative transcriptional regulator (MarR family) protein K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D BSUW23_07020 mhqR; transcriptional regulator (MarR family) protein K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D BSUW23_06735 ohrR; transcriptional regulator sensing organic peroxides K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BSUW23_01750 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BSUW23_12835 transcriptional regulator, MarR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BSUW23_08980 glnR; transcriptional regulator (nitrogen metabolism) K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D BSUW23_04835 cueR; copper efflux transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D BSUW23_11875 bmrR; transcriptional regulator (MerR family) protein K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene D BSUW23_18030 mta; transcriptional regulator (MerR family) protein K21743 mta; MerR family transcriptional regulator, multidrug-efflux activator D BSUW23_13030 yraB; putative transcriptional regulator (MerR family) protein K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D BSUW23_06830 tnrA; nitrogen-sensing transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator D BSUW23_03765 yfmP; transcriptional regulator (MerR family) of metal efflux transporter expression K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon C Fur family D BSUW23_11555 fur; transcriptional regulator for iron transport and metabolism K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BSUW23_12440 zur; transcriptional regulator (Fur family) protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D BSUW23_04395 perR; transcriptional regulator (Fur family) protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family C Rrf2 family D BSUW23_04735 nsrR; NO-dependent activator of the ResDE regulon K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D BSUW23_13305 cymR; transcriptional regulator of cysteine biosynthesis K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D BSUW23_02630 aseR; transcriptional regulator (metals sensing ArsR-SmtB repressors family) protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BSUW23_10240 czrA; transcriptional regulator (multiple metal-sensing ArsR-SmtB transcriptional repressors family) protein K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D BSUW23_12185 sinR; transcriptional regulator for post-exponential-phase response K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation D BSUW23_02895 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D BSUW23_16895 slrR; transcriptional regulator K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator C PadR family D BSUW23_04210 padR; transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D BSUW23_13950 hypothetical protein K10947 K10947; PadR family transcriptional regulator D BSUW23_18780 ywzG; putative transcriptional regulator, PadR family protein K10947 K10947; PadR family transcriptional regulator C Other families D BSUW23_12140 mntR; manganese transport transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D BSUW23_04150 malR; transcriptional activator of the Mal operon K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator D BSUW23_11005 birA; biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BSUW23_05370 yhjP; conserved hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D BSUW23_16505 rghRB; putative transcriptional repressor K22299 rghR; HTH-type transcriptional regulator, competence development regulator D BSUW23_16500 rghRA; transcriptional repressor K22299 rghR; HTH-type transcriptional regulator, competence development regulator D BSUW23_15085 yuaC; putative transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator D BSUW23_16590 yvaV; putative transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D BSUW23_16625 yvbF; putative transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D BSUW23_13100 yrhO; putative transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D BSUW23_00240 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D BSUW23_04110 acoR; transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BSUW23_16265 rsoA; regulator of sigmaO K26990 rsoA; sigma-O factor regulatory protein RsoA D BSUW23_20130 rocR; transcriptional regulator (NtrC/NifA family) protein K06714 rocR; arginine utilization regulatory protein D BSUW23_03055 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D BSUW23_08330 codY; transcriptional regulator, GTP and BCAA-dependent K03706 codY; transcriptional pleiotropic repressor D BSUW23_10025 yozG; putative transcriptional regualtor K07727 K07727; putative transcriptional regulator D BSUW23_04485 ygzD; putative HTH-type transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D BSUW23_02420 ndoAI; antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D BSUW23_19400 licT; transcriptional antiterminator (BglG family) protein K03488 licT; beta-glucoside operon transcriptional antiterminator D BSUW23_19035 sacY; transcriptional antiterminator K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator D BSUW23_18810 sacT; transcriptional antiterminator K26932 sacT; sacPA operon transcriptional antiterminator D BSUW23_07135 glcT; transcriptional antiterminator (BglG family) protein K03480 glcT; transcriptional antiterminator D BSUW23_02155 mtlR; transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator D BSUW23_19140 licR; probable licABCH operon regulator K03491 licR; probable licABCH operon transcriptional regulator C Others D BSUW23_16425 csoR; repressor of copper utilization proteins K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D BSUW23_15810 pucR; transcriptional regulator of the purine degradation operon K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D BSUW23_01650 ycgP; putative transcriptional regulator K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator D BSUW23_00190 abrB; transition state transcriptional regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D BSUW23_07445 abh; transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D BSUW23_00290 spoVT; transcriptional regulator for sigma-G-dependent genes K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D BSUW23_20405 parB; site-specific DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BSUW23_20420 noc; DNA-binding protein Spo0J-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BSUW23_02545 ydeB; putative transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D BSUW23_04680 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D BSUW23_12000 ahrC; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D BSUW23_09020 xylR; negative transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D BSUW23_12635 hrcA; transcriptional regulator of heat-shock genes K03705 hrcA; heat-inducible transcriptional repressor D BSUW23_05890 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D BSUW23_05895 tenI; inhibitor of thiaminase TenA K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D BSUW23_00425 ctsR; transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D BSUW23_17210 yvlC; putative regulator (stress mediated) K03973 pspC; phage shock protein C D BSUW23_16675 cggR; transcriptional regulator of gapA K05311 cggR; central glycolytic genes regulator D BSUW23_19675 deoR; transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D BSUW23_05710 med; transcriptional activator protein Med K05519 med; transcriptional activator of comK gene D BSUW23_11170 mtrB; tryptophan operon RNA-binding attenuation protein (TRAP) K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D BSUW23_07965 pyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D BSUW23_18580 rsfA; prespore-specific regulatory protein K06314 rsfA; prespore-specific regulator D BSUW23_07155 splA; TRAP-like transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon D BSUW23_02765 putative transcriptional repressor K07734 paiB; transcriptional regulator D BSUW23_14095 nrdR; negative regulator of transcription of ribonucleotide reductase nrd genes and operons K07738 nrdR; transcriptional repressor NrdR D BSUW23_19630 hutP; transcriptional anti-terminator K09683 hutP; hut operon positive regulatory protein D BSUW23_05280 comK; competence transcription factor (CTF) K02250 comK; competence protein ComK D BSUW23_07790 mraZ; putative protein involved in cell division or replication K03925 mraZ; transcriptional regulator MraZ D BSUW23_16285 yvrL; putative integral inner membrane protein K26991 yvrL; membrane-bound negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0