+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus subtilis subsp. spizizenii W23

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BSUW23_06950 ogt; O6-alkylguanine DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BSUW23_18760 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BSUW23_19150 aag; 3-alkylated purines and hypoxanthine DNA glycosidase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BSUW23_04345 yfhQ; A/G-specific adenine glycosylase or DNA-(apurinic or apyrimidinic site) lyase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BSUW23_10955 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BSUW23_17045 yvcI; putative triphosphate pyrophosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSUW23_14860 ytkD; nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSUW23_02240 mutT; putative NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSUW23_09060 yncF; putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BSUW23_06950 ogt; O6-alkylguanine DNA alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BSUW23_18760 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BSUW23_04055 yfjP; putative DNA-modified purine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BSUW23_19150 aag; 3-alkylated purines and hypoxanthine DNA glycosidase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BSUW23_04345 yfhQ; A/G-specific adenine glycosylase or DNA-(apurinic or apyrimidinic site) lyase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BSUW23_14135 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BSUW23_10955 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BSUW23_20360 exoA; apurinic/apyrimidinic endonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BSUW23_12455 nfo; type IV apurinic/apyrimidinic endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E BSUW23_17785 ywqL; putative deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E BSUW23_13370 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BSUW23_03360 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BSUW23_14140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BSUW23_17230 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BSUW23_17235 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BSUW23_13820 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BSUW23_03355 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSUW23_05985 yjcD; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSUW23_16390 helD; DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSUW23_14140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BSUW23_03360 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BSUW23_00545 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BSUW23_00550 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BSUW23_00725 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BSUW23_18355 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F BSUW23_08075 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BSUW23_00285 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BSUW23_08760 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BSUW23_13865 mutSB; recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BSUW23_08765 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BSUW23_12030 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BSUW23_12025 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BSUW23_14210 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BSUW23_08540 polC; DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BSUW23_00015 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BSUW23_12670 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BSUW23_00160 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BSUW23_00100 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BSUW23_03360 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BSUW23_03355 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSUW23_05985 yjcD; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSUW23_16390 helD; DNA 3'-5' helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BSUW23_17870 ssbB; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E BSUW23_20370 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BSUW23_13285 yrrC; putative exonuclease with DNA/RNA helicase motif K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BSUW23_08710 recA; multifunctional SOS repair factor K03553 recA; recombination protein RecA E BSUW23_13435 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E BSUW23_13430 ruvB; Holliday junction DNA helicase, ATP-dependent component K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BSUW23_08085 priA; primosomal replication factor Y (primosomal protein N') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BSUW23_05400 sbcC; DNA ATP-dependent repair enzyme K03546 sbcC; DNA repair protein SbcC/Rad50 E BSUW23_05395 sbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BSUW23_08710 recA; multifunctional SOS repair factor K03553 recA; recombination protein RecA E BSUW23_00445 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BSUW23_00025 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E BSUW23_08165 recG; branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BSUW23_13370 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BSUW23_12525 recO; DNA double strand break repair and homologous recombination factor K03584 recO; DNA repair protein RecO (recombination protein O) E BSUW23_00110 recR; recombination protein RecR K06187 recR; recombination protein RecR E BSUW23_11995 recN; factor for double strand breaks DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) E BSUW23_10940 recU; Holliday junction-specific endonuclease K03700 recU; recombination protein U E BSUW23_13435 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E BSUW23_13430 ruvB; Holliday junction DNA helicase, ATP-dependent component K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E BSUW23_05390 addA; ATP-dependent deoxyribonuclease (subunit A) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BSUW23_05385 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BSUW23_05400 sbcC; DNA ATP-dependent repair enzyme K03546 sbcC; DNA repair protein SbcC/Rad50 E BSUW23_05395 sbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BSUW23_06880 ykoV; ATP-dependent DNA ligase subunit K10979 ku; DNA end-binding protein Ku E BSUW23_06875 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BSUW23_00040 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BSUW23_00035 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BSUW23_08300 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BSUW23_11180 hbs; non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BSUW23_13370 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BSUW23_12525 recO; DNA double strand break repair and homologous recombination factor K03584 recO; DNA repair protein RecO (recombination protein O) F BSUW23_00110 recR; recombination protein RecR K06187 recR; recombination protein RecR F BSUW23_03360 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BSUW23_10295 yocI; putative ATP-dependent nucleic acid helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BSUW23_11305 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BSUW23_17230 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BSUW23_17235 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BSUW23_11795 polYA; DNA-damage lesion bypass DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BSUW23_08710 recA; multifunctional SOS repair factor K03553 recA; recombination protein RecA D BSUW23_09175 lexA; transcriptional repressor of the SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D BSUW23_11995 recN; factor for double strand breaks DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N) D BSUW23_17870 ssbB; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D BSUW23_20370 ssbA; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BSUW23_04290 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BSUW23_13870 polX; DNA polymerase X K02347 polX; DNA polymerase (family X) C DNA helicases D BSUW23_10855 ypvA; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BSUW23_10985 dinG; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BSUW23_17045 yvcI; putative triphosphate pyrophosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSUW23_14860 ytkD; nucleoside triphosphate phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSUW23_02240 mutT; putative NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BSUW23_09060 yncF; putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BSUW23_08940 nrdE; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BSUW23_08945 nrdF; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BSUW23_14230 nrnA; oligoribonuclease (nanoRNAse), 3',5'-bisphosphate nucleotidase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024