+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus subtilis subsp. spizizenii TU-B-10

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GYO_1680 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GYO_4186 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GYO_4263 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GYO_1131 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GYO_2460 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GYO_3813 YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GYO_3314 ytkD; nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GYO_0651 putative nudix-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GYO_2124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase superfamily K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GYO_1680 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GYO_4186 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GYO_1067 YfjP K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GYO_4263 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GYO_1131 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GYO_3158 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GYO_2460 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GYO_4502 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GYO_2777 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E GYO_3975 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E GYO_3002 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E GYO_0924 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E GYO_3159 polA; DNA polymerase I superfamily K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E GYO_3854 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E GYO_3855 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E GYO_3096 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E GYO_1489 yjcD; putative UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GYO_0923 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GYO_3657 YvgS K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GYO_3159 polA; DNA polymerase I superfamily K02335 polA; DNA polymerase I [EC:2.7.7.7] E GYO_0924 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GYO_0134 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GYO_0135 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GYO_0168 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GYO_4095 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F GYO_1918 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GYO_0066 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E GYO_4556 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E GYO_3105 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E GYO_2060 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E GYO_2690 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GYO_2689 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GYO_3176 DNA polymerase III, alpha subunit subfamily, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GYO_2013 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E GYO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GYO_2824 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GYO_0040 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GYO_0024 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E GYO_0924 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GYO_1489 yjcD; putative UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GYO_0923 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GYO_3657 YvgS K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GYO_3994 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein E GYO_4503 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GYO_2987 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GYO_2048 recA; protein RecA K03553 recA; recombination protein RecA E GYO_3015 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GYO_3014 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GYO_1921 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GYO_1369 RecF/RecN/SMC N domain, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E GYO_1368 SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GYO_2048 recA; protein RecA K03553 recA; recombination protein RecA E GYO_0113 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E GYO_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E GYO_1937 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GYO_3002 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GYO_2792 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E GYO_0026 recR; recombination protein RecR K06187 recR; recombination protein RecR E GYO_2682 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E GYO_2457 recU; recombination protein U K03700 recU; recombination protein U E GYO_3015 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GYO_3014 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E GYO_1367 addA; recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E GYO_1366 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E GYO_1369 RecF/RecN/SMC N domain, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E GYO_1368 SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E GYO_1665 ykoV; spore germination DNA repair Ku protein YkoV K10979 ku; DNA end-binding protein Ku E GYO_1664 ykoU; spore germination DNA ligase YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GYO_0008 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GYO_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GYO_1966 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F GYO_2507 DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GYO_3002 recJ; single-stranded-DNA-specific exonuclease RecJ, putative K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GYO_2792 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F GYO_0026 recR; recombination protein RecR K06187 recR; recombination protein RecR F GYO_0924 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F GYO_2326 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GYO_2534 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GYO_3854 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F GYO_3855 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GYO_2632 DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D GYO_2048 recA; protein RecA K03553 recA; recombination protein RecA D GYO_2152 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D GYO_2682 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D GYO_3994 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D GYO_4503 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D GYO_1120 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D GYO_3106 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D GYO_2466 DnaQ family exonuclease/DinG family helicase, putative K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D GYO_2441 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D GYO_3813 YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GYO_3314 ytkD; nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GYO_0651 putative nudix-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GYO_2124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase superfamily K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D GYO_2097 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GYO_2098 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D GYO_3180 YtqI K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024