+E Transcription factors KO
#
Transcription Factors - Bacillus subtilis subsp. subtilis 168
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D BSU20250 mtbP; Phi-3T prophage-derived modification methylase Phi3TI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BSU06070 ydiP; BsuMI modification methylase subunit YdiP K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BSU06060 ydiO; BsuMI modification methylase subunit YdiO K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D BSU01640 ybbB; AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D BSU05170 ydeE; AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D BSU01810 adaA; bifunctional transcriptional activator/DNA repair enzyme AdaA K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D BSU18460 gltC; LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BSU09430 citR; LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA
D BSU03620 yclA; LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D BSU37650 cysL; HTH-type transcriptional regulator CysL K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D BSU18420 ftsR; LysR family transcriptional regulator K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D BSU29400 ytlI; LysR family transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D BSU14380 fruR; DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D BSU36420 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D BSU39770 iolR; HTH-type transcriptional regulator IolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D BSU36300 glcR; HTH-type transcriptional repressor GlcR K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D BSU25250 ccpN; transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D BSU03960 ycnK; DeoR family transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D BSU35910 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSU34170 ganR; HTH-type transcriptional regulator GanR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSU30260 msmR; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSU29740 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSU22120 kdgR; LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D BSU12370 exuR; LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D BSU33970 araR; transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D BSU07820 treR; trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D BSU40130 yydK; HTH-type transcriptional regulator YydK K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D BSU05850 gmuR; GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D BSU32560 frlR; DNA-binding transcriptional regulator FrlR K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D BSU02370 ybgA; GntR family transcriptional regulator K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D BSU35030 yvoA; HTH-type transcriptional repressor YvoA K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BSU16810 ymfC; GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BSU34180 yvfI; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSU05240 ydeL; GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BSU09480 yhdI; GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BSU03890 gabR; GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BSU05370 ydfD; GntR family transcriptional regulator K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D BSU30460 ytrA; GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
D BSU40050 gntR; gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D BSU28550 fadR; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D BSU06860 yezE; TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BSU39990 yxaF; HTH-type transcriptional regulator YxaF K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D BSU02680 lmrA; TetR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D BSU27170 bscR; TetR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D BSU04250 lrpC; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSU05050 lrpA; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSU26720 azlB; transcriptional regulator AzlB K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D BSU28410 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D BSU06140 gutR; transcription activator GutR K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator
C MarR family
D BSU09990 hpr; MarR family transcriptional regulator K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D BSU13670 mhqR; MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BSU13150 ohrR; organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BSU17450 glnR; MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D BSU09560 cueR; MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D BSU24020 bmrR; MerR family transcriptional regulator K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
D BSU36600 mta; HTH-type transcriptional activator mta K21743 mta; MerR family transcriptional regulator, multidrug-efflux activator
D BSU27000 yraB; MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D BSU13310 tnrA; MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D BSU07390 yfmP; MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BSU23520 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BSU25100 zur; zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D BSU08730 perR; peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D BSU09380 nsrR; Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BSU27520 cymR; Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D BSU25810 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BSU05330 aseR; ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BSU19120 czrA; ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D BSU33790 sdpR; transcriptional repressor SdpR K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D BSU24610 sinR; XRE family transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D BSU34380 slrR; HTH-type transcriptional regulator SlrR K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D BSU08340 padR; negative transcription regulator PadR K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D BSU38018 ywzG; DNA-binding protein YwzG K10947 K10947; PadR family transcriptional regulator
C Other families
D BSU24520 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BSU08190 malR; RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D BSU22440 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BSU33670 rghRB; HTH-type transcriptional regulator RghRB K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BSU33660 rghRA; HTH-type transcriptional repressor RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BSU31070 yuaC; hypothetical protein K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D BSU33740 yvaV; HTH-type transcriptional regulator YvaV K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D BSU33840 yvbF; HTH-type transcriptional regulator YvbF K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D BSU27110 yrhO; hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D BSU00470 purR; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D BSU08100 acoR; acetoin dehydrogenase operon transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BSU33222 rsoA; sigma-O factor regulatory protein RsoA K26990 rsoA; sigma-O factor regulatory protein RsoA
D BSU28670 ysfB; hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D BSU40350 rocR; arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D BSU05970 ydiH; redox-sensing transcriptional repressor rex K01926 rex; redox-sensing transcriptional repressor
D BSU16170 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D BSU18740 yozG; XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BSU04650 endB; antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D BSU39080 licT; transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D BSU38420 sacY; levansucrase and sucrase synthesis operon antiterminator K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator
D BSU38070 sacT; SacPA operon antiterminator K26932 sacT; sacPA operon transcriptional antiterminator
D BSU13880 glcT; BglG family transcription antiterminator K03480 glcT; transcriptional antiterminator
D BSU04160 mtlR; transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator
D BSU12000 manR; transcriptional regulator ManR K02538 manR; mannose operon transcriptional activator
D BSU38600 licR; licABCH operon regulator K03491 licR; probable licABCH operon transcriptional regulator
C Others
D BSU33520 csoR; copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BSU32420 pucR; purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BSU03230 ycgP; hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D BSU00370 abrB; transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BSU14480 abh; transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BSU00560 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D BSU40960 parB; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BSU40990 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BSU05130 ydeB; transcription factor YdeB K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BSU09270 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D BSU24250 ahrC; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BSU25490 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BSU11650 tenA; thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BSU11660 tenI; regulatory protein TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D BSU00830 ctsR; transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D BSU33950 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D BSU39430 deoR; deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator
D BSU11300 med; transcriptional activator protein med K05519 med; transcriptional activator of comK gene
D BSU22770 mtrB; transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D BSU15470 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BSU37620 rsfA; prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D BSU13920 splA; transcriptional regulator SplA K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D BSU32140 paiB; protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator
D BSU29000 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D BSU39340 hutP; anti-terminator HutP K09683 hutP; hut operon positive regulatory protein
D BSU10420 comK; competence transcription factor K02250 comK; competence protein ComK
D BSU15130 yllB; protein MraZ K03925 mraZ; transcriptional regulator MraZ
D BSU33250 yvrL; membrane-bound negative regulator YvrL K26991 yvrL; membrane-bound negative regulator
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0