+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus subtilis subsp. subtilis OH 131.1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Q433_07740 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Q433_20920 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Q433_21290 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Q433_04815 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Q433_12180 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Q433_19040 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q433_16610 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q433_02555 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q433_10410 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Q433_07740 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Q433_01160 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D Q433_01165 cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Q433_20920 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Q433_01155 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Q433_04510 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Q433_21290 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Q433_04815 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Q433_15745 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Q433_12180 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Q433_22525 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Q433_13745 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E Q433_19825 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Q433_14885 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Q433_03755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Q433_15750 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Q433_19250 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E Q433_19255 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E Q433_15405 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E Q433_06685 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q433_03750 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q433_18350 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q433_15750 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Q433_03755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Q433_00710 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Q433_00715 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Q433_00905 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Q433_20430 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F Q433_09000 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Q433_00350 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Q433_09680 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Q433_15465 recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Q433_09685 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Q433_13300 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Q433_13295 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Q433_15840 dnaE; DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Q433_09450 polC; DNA polymerase III, polC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E Q433_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Q433_13975 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Q433_00220 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Q433_00135 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Q433_03755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Q433_06685 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q433_03750 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q433_18350 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q433_22535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Q433_19925 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Q433_14805 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Q433_09630 hypothetical protein K03553 recA; recombination protein RecA E Q433_14960 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Q433_14955 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Q433_09010 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Q433_06020 nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E Q433_06015 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Q433_09630 hypothetical protein K03553 recA; recombination protein RecA E Q433_00605 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Q433_00020 recombinase RecF K03629 recF; DNA replication and repair protein RecF E Q433_09090 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Q433_14885 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Q433_13820 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Q433_00145 recombinase RecR K06187 recR; recombination protein RecR E Q433_13265 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Q433_12165 Holliday junction resolvase K03700 recU; recombination protein U E Q433_14960 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Q433_14955 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E Q433_06010 ATP-dependent helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Q433_06005 ATP-dependent helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E Q433_06020 nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E Q433_06015 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Q433_07665 DNA repair protein K10979 ku; DNA end-binding protein Ku E Q433_07660 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Q433_00040 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Q433_00030 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Q433_09215 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Q433_12415 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Q433_14885 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Q433_13820 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Q433_00145 recombinase RecR K06187 recR; recombination protein RecR F Q433_03755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Q433_12555 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Q433_11440 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Q433_19250 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F Q433_19255 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Q433_13050 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Q433_11300 DNA repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D Q433_09630 hypothetical protein K03553 recA; recombination protein RecA D Q433_10550 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D Q433_13265 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Q433_22535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Q433_19925 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Q433_04750 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Q433_15470 hypothetical protein K02347 polX; DNA polymerase (family X) C DNA helicases D Q433_12075 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Q433_12210 DNA polymerase III subunit epsilon K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Q433_19040 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q433_16610 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q433_02555 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q433_10410 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Q433_09880 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Q433_09885 ribonucleotide-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Q433_15860 oligoribonuclease K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024