+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Bacillus subtilis XF-1
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E C663_1637 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E C663_1723 rnjB; ribonuclease K12574 rnj; ribonuclease J [EC:3.1.-.-]
E C663_1496 rnjA; ribonuclease J1 K12574 rnj; ribonuclease J [EC:3.1.-.-]
E C663_1739 ymdA; phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-]
E C663_3232 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E C663_1016 yhaM; 3'-5' exoribonuclease K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E C663_3829 dbpA; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E C663_0456 cshA; ATP-dependent RNA helicase; cold shock K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E C663_2396 cshB; ATP-dependent RNA helicase; cold shock K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
E C663_2179 recS; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E C663_1972 recQ; putative ATP-dependent nucleic acid helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E C663_3270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E C663_1714 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E C663_3607 rho; transcription termination factor K03628 rho; transcription termination factor Rho
E C663_2764 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E C663_2429 dnaK; molecular chaperone K04043 dnaK; molecular chaperone DnaK
E C663_0586 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E C663_1783 hfq; RNA-binding protein K03666 hfq; host factor-I protein
D Others
E C663_3423 hypothetical protein K03563 csrA; carbon storage regulator
E C663_3365 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024