+E Transcription factors KO #

  Transcription Factors - Burkholderia thailandensis MSMB121

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D BTI_1951 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BTI_196 bacterial regulatory helix-turn-helix s, AraC family protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D BTI_4533 bacterial regulatory helix-turn-helix s, AraC family protein K05372 ybtA; AraC family transcriptional regulator D BTI_4305 araC-like ligand binding domain protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D BTI_1933 bacterial regulatory helix-turn-helix s, AraC family protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D BTI_873 bacterial regulatory helix-turn-helix s, AraC family protein K07506 K07506; AraC family transcriptional regulator D BTI_3709 bacterial regulatory helix-turn-helix s, AraC family protein K07506 K07506; AraC family transcriptional regulator D BTI_18 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BTI_192 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BTI_5471 bacterial regulatory helix-turn-helix s, AraC family protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D BTI_4936 DJ-1/PfpI family protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D BTI_5395 bacterial regulatory helix-turn-helix s, AraC family protein K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D BTI_1243 argR; transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D BTI_5375 bacterial regulatory helix-turn-helix s, AraC family protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D BTI_3917 bacterial regulatory helix-turn-helix s, AraC family protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D BTI_5762 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_3323 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_3444 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_3390 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_4479 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_5674 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_4608 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_2448 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BTI_3791 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BTI_1063 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D BTI_4977 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D BTI_742 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BTI_4722 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BTI_4488 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BTI_660 cynR; HTH-type transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D BTI_2872 bacterial regulatory helix-turn-helix, lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D BTI_2113 bacterial regulatory helix-turn-helix, lysR family protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D BTI_4643 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D BTI_4743 dmlR; HTH-type transcriptional regulator DmlR K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D BTI_4442 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BTI_2515 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BTI_3069 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BTI_2431 bacterial regulatory helix-turn-helix, lysR family protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BTI_683 bacterial regulatory helix-turn-helix, lysR family protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D BTI_5563 bacterial regulatory helix-turn-helix, lysR family protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D BTI_5100 bacterial regulatory helix-turn-helix, lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D BTI_5088 benM; HTH-type transcriptional regulator BenM K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes C DeoR family D BTI_3097 deoR C terminal sensor domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D BTI_3964 deoR C terminal sensor domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D BTI_1868 bacterial regulatory helix-turn-helix s, AraC family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BTI_2109 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BTI_5373 rafR; HTH-type transcriptional regulator rafR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BTI_1794 periplasmic binding s and sugar binding domain of LacI family protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D BTI_3953 periplasmic binding s and sugar binding domain of LacI family protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor C GntR family D BTI_750 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BTI_1291 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BTI_2928 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BTI_3254 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BTI_3831 UTRA domain protein K03710 K03710; GntR family transcriptional regulator D BTI_4232 UTRA domain protein K03710 K03710; GntR family transcriptional regulator D BTI_661 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BTI_4411 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BTI_3906 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BTI_4818 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BTI_2523 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BTI_5543 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BTI_4249 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BTI_5329 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BTI_4447 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BTI_3677 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D BTI_3859 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D BTI_3008 ttgR; HTH-type transcriptional regulator ttgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D BTI_3561 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator D BTI_4453 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D BTI_5536 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BTI_1505 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BTI_1403 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BTI_972 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BTI_1419 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BTI_2085 bacterial regulatory s, tetR family protein K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D BTI_4958 bacterial regulatory s, tetR family protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D BTI_1129 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_315 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_3400 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_4221 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_2522 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_5616 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_136 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_276 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_5731 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_2971 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_4044 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BTI_2564 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D BTI_3388 asnC family protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon C LuxR family D BTI_5706 sigma-70, region 4 family protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR D BTI_4048 bacterial regulatory s, luxR family protein K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR D BTI_4286 bacterial regulatory s, luxR family protein K20330 toxJ; LuxR family transcriptional regulator, activator of tox operons C MarR family D BTI_5208 ohrR; transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BTI_4374 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D BTI_665 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BTI_2996 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D BTI_4452 pcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BTI_3676 pcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BTI_2572 bacterial transcriptional regulator family protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis C CRP/FNR family D BTI_2938 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BTI_4721 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BTI_5073 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BTI_3672 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BTI_1271 cyclic nucleotide-binding domain protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D BTI_1345 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D BTI_1692 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D BTI_1259 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D BTI_3258 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family D BTI_71 transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator C Other families D BTI_676 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BTI_3336 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BTI_709 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BTI_4524 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D BTI_4064 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D BTI_485 higA; addiction module antidote protein, HigA family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BTI_5414 AAA domain family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BTI_1698 bacterial regulatory, Fis family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BTI_4660 cdaR; carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D BTI_5200 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein D BTI_1779 cro/C1-type HTH DNA-binding domain protein K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D BTI_172 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D BTI_1628 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BTI_4759 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BTI_51 parB-like nuclease domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BTI_155 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BTI_776 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BTI_68 paaX-like family protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D BTI_5699 transcription elongation factor, GreA/GreB, C-term family protein K06140 rnk; regulator of nucleoside diphosphate kinase D BTI_910 phosphoribosyl transferase domain protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D BTI_2164 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BTI_1089 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BTI_2524 putative FMN-binding domain protein K07734 paiB; transcriptional regulator D BTI_908 hypothetical protein K07735 algH; putative transcriptional regulator D BTI_3553 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BTI_4835 prokaryotic dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor D BTI_847 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BTI_572 mraZ family protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0