+E Transcription factors KO
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Transcription Factors - Burkholderia thailandensis E264
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D BTH_II1364 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BTH_I3248 HTH-type transcriptional regulator eutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D BTH_II1829 pchR; AraC family regulatory protein K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D BTH_I1405 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D BTH_I2369 transcriptional regulator, AraC family domain protein K07506 K07506; AraC family transcriptional regulator
D BTH_I0085 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BTH_II1760 transcriptional regulator, AraC family K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D BTH_II1850 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D BTH_I1774 transcriptional regulator, AraC family K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D BTH_II1869 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D BTH_II0968 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D BTH_II1449 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BTH_I0383 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BTH_I0253 LysR family regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BTH_II0246 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BTH_II1549 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BTH_I2716 transcriptional regulator, LysR family, putative K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BTH_II1120 transcriptional regulator, LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D BTH_I1605 transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D BTH_II0315 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D BTH_I1281 oxidative stress regulatory protein OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BTH_II0034 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BTH_II2146 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BTH_I1200 transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D BTH_II0107 transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D BTH_I0813 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D BTH_I2476 cys regulon transcriptional activator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D BTH_II0218 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D BTH_II2130 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D BTH_II0014 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D BTH_I0632 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BTH_II2108 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BTH_I2818 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BTH_I1223 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BTH_II1659 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D BTH_II1615 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D BTH_II0474 transcriptional regulator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D BTH_II0486 transcriptional regulator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D BTH_I0603 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D BTH_II0889 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BTH_I2472 purR; ribose operon repressor RbsR PA1949 K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BTH_I2337 xylR; xylose operon regluatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BTH_II1871 raffinose repressor, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BTH_I0812 ribose operon repressor, putative K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BTH_I2299 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D BTH_II0905 transcriptional regulator lacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
D BTH_I1821 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BTH_I0754 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BTH_I0446 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BTH_II1096 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D BTH_II0659 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D BTH_I1202 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BTH_II2081 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BTH_II0978 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BTH_II1916 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BTH_II0641 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BTH_II1693 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BTH_II1208 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BTH_II2118 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D BTH_II1074 regulatory protein betI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BTH_I0679 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D BTH_I0158 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D BTH_II2128 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D BTH_II1702 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BTH_I1974 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BTH_I2446 amrR; regulator AmrR K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D BTH_II0293 transcriptional regulator, TetR family, putative K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D BTH_I0309 AsnC family regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_I1657 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_I3105 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_I0712 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_II0671 Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_II0809 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_II2279 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_II1485 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_II1595 Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_I3336 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_I3153 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BTH_I2859 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BTH_I0319 AsnC family regulatory protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D BTH_II1510 autoinducer-binding transcriptional regulator, LuxR family K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D BTH_II1681 autoinducer-binding transcriptional regulator, LuxR family, putative K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D BTH_II0805 transcriptional regulator, LuxR family K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
C MarR family
D BTH_II0598 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BTH_II2041 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BTH_II1612 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D BTH_I2216 transcriptional regulator, MerR family K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BTH_I1206 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BTH_I0691 transcriptional regulator, putative K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D BTH_II1220 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BTH_II2127 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BTH_I2865 transcriptional regulator, putative K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
C CRP/FNR family
D BTH_I0747 transcriptional regulator, putative K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BTH_II0035 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BTH_II1244 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BTH_II0460 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BTH_I1801 cyclic nucleotide-binding domain protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D BTH_I1874 iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D BTH_I2204 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BTH_I1790 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D BTH_II0961 arsenical resistance transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
D BTH_I0055 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D BTH_I1216 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D BTH_I0370 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BTH_I1251 factor-for-inversion stimulation protein-related protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BTH_II2190 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D BTH_II0789 hipB domain protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D BTH_II1819 sigma-54 activated regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BTH_II0203 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D BTH_II0590 transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
D BTH_I2285 transcription regulator, Cro/CI family -related protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D BTH_I3301 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D BTH_I2317 regulatory protein nosR, putative K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D BTH_I2137 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BTH_II1031 gp58 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BTH_I3317 stage 0 sporulation protein J, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BTH_I0076 stage 0 sporulation protein J, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BTH_II2372 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BTH_I2747 stage 0 sporulation protein J, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BTH_I1302 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BTH_I0058 conserved hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D BTH_II1517 nucleoside diphosphate kinase regulator, putative K06140 rnk; regulator of nucleoside diphosphate kinase
D BTH_I1464 pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BTH_II2006 prophage regulatory protein AlpA family protein K07733 alpA; prophage regulatory protein
D BTH_I1915 Prophage CP4-57 regulatory protein (AlpA) family K07733 alpA; prophage regulatory protein
D BTH_I2821 transcriptional regulator, putative K07734 paiB; transcriptional regulator
D BTH_I1462 Uncharacterized ACR, COG1678 K07735 algH; putative transcriptional regulator
D BTH_I0166 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D BTH_I1380 conserved hypothetical protein TIGR00244 K07738 nrdR; transcriptional repressor NrdR
D BTH_I1109 mraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0