+E Transcription factors KO
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Transcription Factors - Burkholderia thailandensis 2003015869
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D DR62_1123 AraC family transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D DR62_4287 AraC family transcriptional regulator K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D DR62_456 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D DR62_1296 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DR62_4208 transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D DR62_4308 AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D DR62_80 AraC family transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D DR62_4327 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D DR62_3937 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D DR62_1444 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_3547 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_1577 XRE family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_2520 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_3998 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_4265 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_5166 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DR62_3849 LysR family transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D DR62_245 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D DR62_5233 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D DR62_2879 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D DR62_586 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DR62_4665 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DR62_4920 LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DR62_08065 transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D DR62_664 transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D DR62_2025 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D DR62_2761 transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D DR62_5138 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D DR62_4647 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D DR62_4900 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D DR62_4628 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D DR62_1828 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D DR62_2424 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D DR62_642 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D DR62_4107 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D DR62_4062 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D DR62_5384 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D DR62_5395 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D DR62_1801 DeoR faimly transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DR62_3428 AraC family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D DR62_4329 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DR62_2765 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DR62_2903 AraC family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DR62_2937 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D DR62_3443 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
D DR62_32 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D DR62_1951 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DR62_1640 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DR62_5615 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DR62_3872 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DR62_4599 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DR62_663 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DR62_3927 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DR62_4140 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DR62_5598 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DR62_4372 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DR62_4636 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DR62_3758 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D DR62_3895 BetI family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D DR62_1874 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DR62_1351 dihydroorotate oxidase K05501 slmA; TetR/AcrR family transcriptional regulator
D DR62_4644 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D DR62_4148 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DR62_3255 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DR62_2790 TetR family transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D DR62_5210 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D DR62_1503 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_194 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_1012 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_5626 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_5763 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_3512 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_1042 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_1179 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_1911 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_4042 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DR62_2384 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D DR62_1513 AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D DR62_3487 LuxR family transcriptional regulator K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D DR62_4128 LuxR family transcriptional regulator K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D DR62_5759 LuxR family transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
C MarR family
D DR62_5517 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D DR62_4556 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DR62_4059 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D DR62_3021 MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D DR62_659 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DR62_1886 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D DR62_4643 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DR62_3746 4-hydroxyphenylpyruvate dioxygenase K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DR62_2378 IclR family transcriptional regulator K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
C CRP/FNR family
D DR62_1944 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DR62_4921 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DR62_5371 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DR62_3722 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DR62_52 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D DR62_3335 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D DR62_3032 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D DR62_64 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D DR62_3946 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
D DR62_1244 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D DR62_649 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DR62_1564 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DR62_615 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DR62_4709 Fis family transcriptional regulator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D DR62_5737 gluconate transporter K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D DR62_4276 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DR62_5119 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D DR62_5509 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D DR62_842 DNA-binding protein K07726 K07726; putative transcriptional regulator
D DR62_2951 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D DR62_1145 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D DR62_2919 FMN-binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D DR62_3096 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DR62_4885 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DR62_4507 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DR62_1161 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DR62_565 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D DR62_1247 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D DR62_3480 elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase
D DR62_417 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D DR62_2013 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D DR62_06115 transcriptional regulator K07733 alpA; prophage regulatory protein
D DR62_2154 transcriptional regulator K07733 alpA; prophage regulatory protein
D DR62_2421 transcriptional regulator K07734 paiB; transcriptional regulator
D DR62_419 hypothetical protein K07735 algH; putative transcriptional regulator
D DR62_1359 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D DR62_482 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D DR62_755 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0