+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia thailandensis E444

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BTJ_1697 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BTJ_213 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BTJ_2847 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BTJ_1985 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BTJ_1442 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BTJ_3463 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BTJ_2897 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BTJ_5568 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BTJ_1654 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BTJ_1697 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BTJ_2338 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BTJ_213 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BTJ_2847 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BTJ_448 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BTJ_2339 alkA N-terminal domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BTJ_386 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BTJ_1985 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BTJ_2561 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BTJ_1986 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BTJ_1442 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BTJ_2308 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BTJ_252 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BTJ_290 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BTJ_467 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BTJ_4932 polA; DNA polymerase I family protein K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BTJ_4400 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BTJ_1967 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BTJ_3966 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BTJ_135 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BTJ_1060 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BTJ_4932 polA; DNA polymerase I family protein K02335 polA; DNA polymerase I [EC:2.7.7.7] E BTJ_467 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BTJ_2686 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BTJ_2687 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BTJ_2720 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BTJ_3351 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BTJ_531 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BTJ_317 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BTJ_3081 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BTJ_1680 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BTJ_4938 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BTJ_1427 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BTJ_2351 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BTJ_1599 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BTJ_2976 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BTJ_595 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BTJ_3359 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BTJ_1205 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BTJ_656 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BTJ_467 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BTJ_1060 uvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BTJ_1965 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BTJ_363 D12 class N6 adenine-specific DNA methyltransferase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E BTJ_1827 vsr; DNA mismatch endonuclease Vsr family protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BTJ_1268 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E BTJ_1269 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E BTJ_1267 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BTJ_1783 recA; protein RecA K03553 recA; recombination protein RecA E BTJ_3010 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BTJ_3009 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BTJ_3011 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BTJ_2467 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BTJ_618 putative primosomal replication protein n K02686 priB; primosomal replication protein N D RecFOR pathway proteins E BTJ_1783 recA; protein RecA K03553 recA; recombination protein RecA E BTJ_453 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BTJ_3042 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BTJ_290 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BTJ_128 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BTJ_658 recR; recombination protein RecR K06187 recR; recombination protein RecR E BTJ_3062 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BTJ_3010 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BTJ_3009 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BTJ_3011 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BTJ_28 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BTJ_2352 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F BTJ_2422 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BTJ_290 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BTJ_128 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BTJ_658 recR; recombination protein RecR K06187 recR; recombination protein RecR F BTJ_467 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BTJ_3013 bacterial regulatory , Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BTJ_1018 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F BTJ_35 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F BTJ_2688 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BTJ_4400 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BTJ_1967 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BTJ_3966 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F BTJ_5591 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_4529 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_2565 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_2600 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_3470 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_5162 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_1113 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BTJ_4148 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BTJ_264 impB/mucB/samB C-terminal family protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BTJ_1783 recA; protein RecA K03553 recA; recombination protein RecA D BTJ_917 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BTJ_3062 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BTJ_2022 putative cell division inhibitor protein K14160 imuA; protein ImuA D BTJ_2021 impB/mucB/samB family protein K14161 imuB; protein ImuB D BTJ_2020 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BTJ_1965 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BTJ_1782 recX family protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BTJ_3877 PHP domain protein K02347 polX; DNA polymerase (family X) C DNA helicases D BTJ_2503 uvrD/REP helicase N-terminal domain protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BTJ_687 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BTJ_5397 DEAD/H associated family protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BTJ_2897 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BTJ_5568 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BTJ_1654 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BTJ_2920 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BTJ_3850 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BTJ_4258 ribonucleotide reductase, barrel domain protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BTJ_2921 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024