+E Ribosome biogenesis KO
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Ribosome Biogenesis - Bacillus thuringiensis MC28
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D MC28_3072 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C MC28_3591 GTP-binding protein Era K03595 era; GTPase
C MC28_3732 obg; GTP-binding protein CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C MC28_3039 Transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA
C MC28_3474 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C MC28_4808 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D MC28_3986 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D MC28_4756 rsmA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D MC28_3088 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D MC28_4813 16S rRNA mG 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D MC28_3215 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D MC28_3602 RNA methyltransferase, RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D MC28_4714 rsmG; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D MC28_3140 rsmH; S-adenosyl-L-methionine-dependent methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D MC28_4751 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D MC28_3468 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D MC28_4804 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D MC28_4691 rlmH; putative cytosolic protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D MC28_3821 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D MC28_3087 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D MC28_3468 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D MC28_5048 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D MC28_5151 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D MC28_0707 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D MC28_0425 putative RNA pseudouridine synthase yjbO K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D MC28_0522 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D MC28_3115 putative RNA pseudouridine synthase ylyB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D MC28_1590 Pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D MC28_3831 RNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C MC28_4948 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MC28_0816 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C MC28_1364 Ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C MC28_2567 Acetyltransferase, GNAT K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C MC28_3439 Ribosomal-protein-S5-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C MC28_3964 Ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C MC28_4202 Acetyltransferase, GNAT K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C MC28_3065 rimM; Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM
C MC28_0481 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C MC28_3603 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C MC28_3072 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C MC28_3737 Ribonuclease, Rne/Rng K08301 rng; ribonuclease G [EC:3.1.26.-]
C MC28_3677 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C MC28_4803 ribonuclease Iii K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C MC28_4686 ATP-dependent RNA helicase dbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C MC28_1680 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C MC28_4936 cshA; DEAD-box ATP-dependent RNA helicase ydbR K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C MC28_3577 ATP-dependent RNA helicase yqfR K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C MC28_3591 GTP-binding protein Era K03595 era; GTPase
C MC28_1230 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C MC28_3084 rsgA; ribosome biogenesis GTPase rsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C MC28_0738 der; GTP-binding protein engA K03977 engA; GTPase
C MC28_3732 obg; GTP-binding protein CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C MC28_3061 rbgA; Ras superfamily GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
C MC28_1016 GTP-binding protein K03665 hflX; GTPase
C MC28_2867 GTP-binding protein K03665 hflX; GTPase
C MC28_3627 Yqeh Gtpase K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C MC28_4562 sua5/yciO/yrdC/ywlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C MC28_3699 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C MC28_3035 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C MC28_3040 rimP; putative cytosolic protein K09748 rimP; ribosome maturation factor RimP
C MC28_4723 putative cytosolic protein K14761 rlbA; ribosome-associated protein
C MC28_3622 iojap-like protein K09710 ybeB; ribosome-associated protein
C MC28_3594 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C MC28_3625 RNA binding protein K07574 yhbY; RNA-binding protein
C MC28_4423 Ribosome-associated factor Y K05808 hpf; ribosome hibernation promoting factor
C MC28_4707 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase
C MC28_3146 putative cytoplasmic protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024