+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bibersteinia trehalosi USDA-ARS-USMARC-190

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D F544_13980 Methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E F544_18130 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E F544_22810 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E F544_11990 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D F544_15370 Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D F544_19870 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D F544_13980 Methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E F544_18130 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E F544_22810 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E F544_20410 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E F544_2130 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E F544_11990 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E F544_9990 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E F544_16600 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E F544_10540 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E F544_6230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E F544_12860 DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E F544_10760 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E F544_10710 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E F544_7200 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E F544_7330 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E F544_12860 DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E F544_6230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F F544_22590 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F F544_22580 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F F544_20010 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F F544_21620 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F F544_21430 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E F544_1120 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E F544_20540 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E F544_8620 DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E F544_10360 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E F544_11190 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E F544_13760 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E F544_16360 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E F544_21450 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E F544_4420 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E F544_15950 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E F544_2180 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E F544_4900 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E F544_12490 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E F544_7720 DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E F544_6230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E F544_7330 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E F544_10770 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E F544_2410 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E F544_17820 Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E F544_16530 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E F544_1870 Exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E F544_15590 Exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E F544_17650 Protein RecA K03553 recA; recombination protein RecA E F544_7550 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E F544_7540 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E F544_14040 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E F544_21170 Crossover junction endodeoxyribonuclease rusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E F544_6560 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E F544_8500 Primosomal replication protein n K02686 priB; primosomal replication protein N E F544_10360 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E F544_17650 Protein RecA K03553 recA; recombination protein RecA E F544_9750 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E F544_21440 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E F544_21580 ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E F544_10540 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E F544_9590 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E F544_5500 Recombination protein recR K06187 recR; recombination protein RecR E F544_8610 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E F544_12530 Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC E F544_7550 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E F544_7540 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E F544_14040 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E F544_14460 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E F544_8250 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E F544_12830 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F F544_14760 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F F544_10930 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F F544_12150 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F F544_16760 DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F F544_10540 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F F544_9590 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F F544_5500 Recombination protein recR K06187 recR; recombination protein RecR F F544_6230 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F F544_7480 DNA-binding protein for site-specific recombination and inversion K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F F544_10170 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F F544_11640 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F F544_10360 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F F544_15220 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F F544_10760 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F F544_10710 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F F544_9780 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D F544_17810 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D F544_16580 SOS-response transcriptional repressors/RecA-mediated autopeptidase K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D F544_17650 Protein RecA K03553 recA; recombination protein RecA D F544_15240 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D F544_8610 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D F544_10770 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D F544_2410 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D F544_17660 Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D F544_16520 ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D F544_14800 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D F544_15370 Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D F544_19870 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D F544_10730 reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D F544_19470 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D F544_10740 reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D F544_19460 reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024