+F Repair protein KO
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DNA Repair and Recombination Proteins - Bartonella tribocorum BM1374166
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BM1374166_00700 methyltransferase (fragment) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BM1374166_00627 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BM1374166_00089 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BM1374166_00201 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BM1374166_02030 dut_1; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BM1374166_02032 dut_3; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BM1374166_00700 methyltransferase (fragment) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BM1374166_00721 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BM1374166_00703 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BM1374166_00627 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BM1374166_01746 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BM1374166_00249 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BM1374166_00089 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BM1374166_01448 xthA1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BM1374166_02164 xthA2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BM1374166_01400 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BM1374166_01508 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BM1374166_00006 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BM1374166_01369 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BM1374166_00690 uvrB2; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BM1374166_00777 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BM1374166_01501 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BM1374166_00006 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BM1374166_01508 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BM1374166_00837 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BM1374166_00838 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BM1374166_01418 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BM1374166_00722 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BM1374166_01131 mfd; transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BM1374166_00093 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BM1374166_00269 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BM1374166_01747 xseA_1; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BM1374166_00605 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BM1374166_01299 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BM1374166_00113 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BM1374166_00767 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BM1374166_02244 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BM1374166_01100 dnaC; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BM1374166_00005 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BM1374166_00233 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BM1374166_01508 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BM1374166_01501 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BM1374166_00408 ssb2_2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BM1374166_00328 ssb2_1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BM1374166_01368 ssb4; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BM1374166_00898 ssb2_4; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BM1374166_01998 ssb2_5; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BM1374166_00939 single-strand binding protein (fragment) K03111 ssb; single-strand DNA-binding protein
E BM1374166_00509 ssb2_3; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E BM1374166_01200 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_00330 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_01008 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_01733 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_01156 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_00275 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_02249 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_01316 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BM1374166_01689 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BM1374166_01413 recA; recombinase A K03553 recA; recombination protein RecA
E BM1374166_02078 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BM1374166_02077 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BM1374166_02079 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_00932 phage related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_00335 phage related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_02005 phage related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_02146 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E BM1374166_01413 recA; recombinase A K03553 recA; recombination protein RecA
E BM1374166_00748 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BM1374166_00114 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E BM1374166_01300 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BM1374166_01400 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BM1374166_00730 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BM1374166_00231 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BM1374166_01509 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BM1374166_02078 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BM1374166_02077 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BM1374166_02079 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_00932 phage related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_00335 phage related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BM1374166_02005 phage related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E BM1374166_00025 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BM1374166_00024 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BM1374166_01367 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BM1374166_00038 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BM1374166_01068 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BM1374166_00818 hupB; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BM1374166_01400 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BM1374166_00730 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BM1374166_00231 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BM1374166_01508 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BM1374166_01241 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F BM1374166_00013 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F BM1374166_01369 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BM1374166_00690 uvrB2; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F BM1374166_02169 korB; KorB protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D BM1374166_01413 recA; recombinase A K03553 recA; recombination protein RecA
D BM1374166_01095 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BM1374166_00399 putative phage repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BM1374166_01509 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BM1374166_00408 ssb2_2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BM1374166_00328 ssb2_1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BM1374166_01368 ssb4; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BM1374166_00898 ssb2_4; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BM1374166_01998 ssb2_5; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BM1374166_00939 single-strand binding protein (fragment) K03111 ssb; single-strand DNA-binding protein
D BM1374166_00509 ssb2_3; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D BM1374166_00201 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BM1374166_02030 dut_1; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BM1374166_02032 dut_3; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BM1374166_00193 nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BM1374166_00194 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024